Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00825 and AO353_00830 are separated by 107 nucleotides AO353_00830 and AO353_00835 are separated by 114 nucleotides AO353_00835 and AO353_00840 are separated by 2 nucleotides AO353_00840 and AO353_00845 are separated by 63 nucleotides
AO353_00825: AO353_00825 - porin, at 189,146 to 190,120
_00825
AO353_00830: AO353_00830 - RNA polymerase subunit sigma, at 190,228 to 190,794
_00830
AO353_00835: AO353_00835 - transporter, at 190,909 to 191,733
_00835
AO353_00840: AO353_00840 - CrfX protein, at 191,736 to 191,981
_00840
AO353_00845: AO353_00845 - CmaX protein, at 192,045 to 193,040
_00845
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 189.910 kb on - strand, within AO353_00825 at 189.946 kb on - strand, within AO353_00825 at 190.147 kb on - strand at 190.209 kb on - strand at 190.230 kb on - strand at 190.230 kb on - strand at 190.395 kb on - strand, within AO353_00830 at 190.575 kb on + strand, within AO353_00830 at 190.674 kb on + strand, within AO353_00830 at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.893 kb on - strand at 190.893 kb on - strand at 190.921 kb on - strand at 190.986 kb on + strand at 191.057 kb on + strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.220 kb on + strand, within AO353_00835 at 191.221 kb on - strand, within AO353_00835 at 191.221 kb on - strand, within AO353_00835 at 191.221 kb on - strand, within AO353_00835 at 191.332 kb on + strand, within AO353_00835 at 191.332 kb on + strand, within AO353_00835 at 191.333 kb on - strand, within AO353_00835 at 191.366 kb on - strand, within AO353_00835 at 191.366 kb on - strand, within AO353_00835 at 191.366 kb on - strand, within AO353_00835 at 191.375 kb on - strand, within AO353_00835 at 191.378 kb on + strand, within AO353_00835 at 191.378 kb on + strand, within AO353_00835 at 191.379 kb on - strand, within AO353_00835 at 191.379 kb on - strand, within AO353_00835 at 191.379 kb on - strand, within AO353_00835 at 191.469 kb on - strand, within AO353_00835 at 191.490 kb on + strand, within AO353_00835 at 191.635 kb on + strand, within AO353_00835 at 191.636 kb on - strand, within AO353_00835 at 191.771 kb on + strand, within AO353_00840 at 191.982 kb on - strand at 191.982 kb on - strand at 191.982 kb on - strand at 191.998 kb on - strand at 191.998 kb on - strand at 192.048 kb on + strand at 192.049 kb on - strand at 192.049 kb on - strand at 192.162 kb on + strand, within AO353_00845 at 192.162 kb on + strand, within AO353_00845 at 192.163 kb on - strand, within AO353_00845 at 192.163 kb on - strand, within AO353_00845 at 192.163 kb on - strand, within AO353_00845 at 192.163 kb on - strand, within AO353_00845 at 192.163 kb on - strand, within AO353_00845 at 192.164 kb on + strand, within AO353_00845 at 192.226 kb on + strand, within AO353_00845 at 192.320 kb on - strand, within AO353_00845 at 192.353 kb on - strand, within AO353_00845 at 192.489 kb on - strand, within AO353_00845 at 192.489 kb on - strand, within AO353_00845 at 192.490 kb on + strand, within AO353_00845 at 192.491 kb on - strand, within AO353_00845 at 192.491 kb on - strand, within AO353_00845 at 192.566 kb on + strand, within AO353_00845 at 192.567 kb on - strand, within AO353_00845 at 192.567 kb on - strand, within AO353_00845 at 192.577 kb on + strand, within AO353_00845 at 192.578 kb on - strand, within AO353_00845 at 192.578 kb on - strand, within AO353_00845 at 192.578 kb on - strand, within AO353_00845 at 192.578 kb on - strand, within AO353_00845 at 192.587 kb on + strand, within AO353_00845 at 192.588 kb on - strand, within AO353_00845 at 192.589 kb on + strand, within AO353_00845 at 192.589 kb on + strand, within AO353_00845 at 192.589 kb on + strand, within AO353_00845 at 192.589 kb on + strand, within AO353_00845 at 192.589 kb on + strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.673 kb on - strand, within AO353_00845 at 192.673 kb on - strand, within AO353_00845 at 192.673 kb on - strand, within AO353_00845
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 189,910 - AO353_00825 0.78 -0.4 189,946 - AO353_00825 0.82 -0.5 190,147 - +0.7 190,209 - -0.1 190,230 - -0.2 190,230 - -0.7 190,395 - AO353_00830 0.29 -1.4 190,575 + AO353_00830 0.61 +0.5 190,674 + AO353_00830 0.79 -0.7 190,888 - -0.5 190,888 - -0.6 190,888 - -0.5 190,888 - -1.1 190,888 - -0.9 190,888 - -0.3 190,888 - +0.5 190,888 - -0.3 190,888 - -1.4 190,888 - -1.3 190,893 - -1.3 190,893 - +0.2 190,921 - -1.8 190,986 + -2.3 191,057 + AO353_00835 0.18 -1.3 191,058 - AO353_00835 0.18 +0.4 191,058 - AO353_00835 0.18 -1.3 191,058 - AO353_00835 0.18 -0.7 191,058 - AO353_00835 0.18 -0.9 191,073 - AO353_00835 0.20 -0.1 191,073 - AO353_00835 0.20 -1.1 191,073 - AO353_00835 0.20 -0.7 191,073 - AO353_00835 0.20 -1.9 191,220 + AO353_00835 0.38 -0.5 191,221 - AO353_00835 0.38 +0.2 191,221 - AO353_00835 0.38 -0.7 191,221 - AO353_00835 0.38 -2.1 191,332 + AO353_00835 0.51 -1.6 191,332 + AO353_00835 0.51 -0.7 191,333 - AO353_00835 0.51 -1.6 191,366 - AO353_00835 0.55 -1.5 191,366 - AO353_00835 0.55 -2.2 191,366 - AO353_00835 0.55 -0.9 191,375 - AO353_00835 0.56 -0.5 191,378 + AO353_00835 0.57 -1.5 191,378 + AO353_00835 0.57 -2.1 191,379 - AO353_00835 0.57 -2.0 191,379 - AO353_00835 0.57 -3.1 191,379 - AO353_00835 0.57 -3.3 191,469 - AO353_00835 0.68 -1.3 191,490 + AO353_00835 0.70 +1.7 191,635 + AO353_00835 0.88 +1.9 191,636 - AO353_00835 0.88 -2.6 191,771 + AO353_00840 0.14 -2.7 191,982 - -0.4 191,982 - -0.7 191,982 - -0.7 191,998 - -0.8 191,998 - +2.0 192,048 + -0.9 192,049 - +0.4 192,049 - -1.6 192,162 + AO353_00845 0.12 -1.9 192,162 + AO353_00845 0.12 -1.2 192,163 - AO353_00845 0.12 +0.7 192,163 - AO353_00845 0.12 -1.8 192,163 - AO353_00845 0.12 +0.5 192,163 - AO353_00845 0.12 -0.4 192,163 - AO353_00845 0.12 +0.8 192,164 + AO353_00845 0.12 -2.2 192,226 + AO353_00845 0.18 -1.1 192,320 - AO353_00845 0.28 -0.5 192,353 - AO353_00845 0.31 -2.4 192,489 - AO353_00845 0.45 -1.5 192,489 - AO353_00845 0.45 -0.3 192,490 + AO353_00845 0.45 -1.9 192,491 - AO353_00845 0.45 -1.3 192,491 - AO353_00845 0.45 -0.6 192,566 + AO353_00845 0.52 +0.2 192,567 - AO353_00845 0.52 -2.1 192,567 - AO353_00845 0.52 +0.0 192,577 + AO353_00845 0.53 -0.9 192,578 - AO353_00845 0.54 -1.5 192,578 - AO353_00845 0.54 +1.1 192,578 - AO353_00845 0.54 -0.4 192,578 - AO353_00845 0.54 -1.8 192,587 + AO353_00845 0.54 -0.7 192,588 - AO353_00845 0.55 -1.3 192,589 + AO353_00845 0.55 -0.3 192,589 + AO353_00845 0.55 -2.7 192,589 + AO353_00845 0.55 -2.0 192,589 + AO353_00845 0.55 -1.3 192,589 + AO353_00845 0.55 -0.3 192,590 - AO353_00845 0.55 +0.5 192,590 - AO353_00845 0.55 -0.0 192,590 - AO353_00845 0.55 -1.4 192,590 - AO353_00845 0.55 -3.1 192,590 - AO353_00845 0.55 -1.0 192,590 - AO353_00845 0.55 -1.5 192,673 - AO353_00845 0.63 -0.3 192,673 - AO353_00845 0.63 -3.0 192,673 - AO353_00845 0.63 -0.3
Or see this region's nucleotide sequence