Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00720 and AO353_00725 are separated by 2 nucleotides AO353_00725 and AO353_00730 are separated by 265 nucleotides
AO353_00720: AO353_00720 - chromosome segregation protein SMC, at 154,443 to 157,931
_00720
AO353_00725: AO353_00725 - GntR family transcriptional regulator, at 157,934 to 158,593
_00725
AO353_00730: AO353_00730 - FAD-binding molybdopterin dehydrogenase, at 158,859 to 160,313
_00730
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.051 kb on + strand, within AO353_00720 at 157.051 kb on + strand, within AO353_00720 at 157.052 kb on - strand, within AO353_00720 at 157.052 kb on - strand, within AO353_00720 at 157.270 kb on + strand, within AO353_00720 at 157.270 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.415 kb on - strand, within AO353_00720 at 157.415 kb on - strand, within AO353_00720 at 157.415 kb on - strand, within AO353_00720 at 157.510 kb on + strand, within AO353_00720 at 157.510 kb on + strand, within AO353_00720 at 157.585 kb on + strand at 157.585 kb on + strand at 157.585 kb on + strand at 157.586 kb on - strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.649 kb on - strand at 157.649 kb on - strand at 157.724 kb on + strand at 157.725 kb on - strand at 157.859 kb on + strand at 157.859 kb on + strand at 157.983 kb on + strand at 157.983 kb on + strand at 157.984 kb on - strand at 157.984 kb on - strand at 158.103 kb on + strand, within AO353_00725 at 158.151 kb on + strand, within AO353_00725 at 158.151 kb on + strand, within AO353_00725 at 158.151 kb on + strand, within AO353_00725 at 158.152 kb on - strand, within AO353_00725 at 158.152 kb on - strand, within AO353_00725 at 158.152 kb on - strand, within AO353_00725 at 158.158 kb on + strand, within AO353_00725 at 158.232 kb on + strand, within AO353_00725 at 158.232 kb on + strand, within AO353_00725 at 158.232 kb on + strand, within AO353_00725 at 158.233 kb on - strand, within AO353_00725 at 158.325 kb on + strand at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.621 kb on - strand at 158.637 kb on - strand at 158.707 kb on + strand at 158.707 kb on + strand at 158.708 kb on - strand at 158.708 kb on - strand at 158.708 kb on - strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.758 kb on + strand at 158.758 kb on + strand at 158.772 kb on + strand at 158.772 kb on + strand at 158.772 kb on + strand at 158.773 kb on - strand at 158.773 kb on - strand at 158.810 kb on - strand at 158.837 kb on + strand at 158.838 kb on - strand at 158.872 kb on + strand at 158.872 kb on + strand at 158.876 kb on + strand at 158.877 kb on - strand at 158.877 kb on - strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.932 kb on - strand at 158.932 kb on - strand at 158.932 kb on - strand at 158.932 kb on - strand at 158.999 kb on + strand at 159.000 kb on - strand at 159.000 kb on - strand at 159.492 kb on + strand, within AO353_00730 at 159.492 kb on + strand, within AO353_00730 at 159.492 kb on + strand, within AO353_00730 at 159.492 kb on + strand, within AO353_00730 at 159.492 kb on + strand, within AO353_00730 at 159.493 kb on - strand, within AO353_00730 at 159.493 kb on - strand, within AO353_00730 at 159.493 kb on - strand, within AO353_00730 at 159.493 kb on - strand, within AO353_00730 at 159.585 kb on + strand, within AO353_00730 at 159.585 kb on + strand, within AO353_00730 at 159.585 kb on + strand, within AO353_00730 at 159.585 kb on + strand, within AO353_00730 at 159.585 kb on + strand, within AO353_00730 at 159.586 kb on - strand, within AO353_00730 at 159.586 kb on - strand, within AO353_00730 at 159.586 kb on - strand, within AO353_00730
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 157,051 + AO353_00720 0.75 -0.4 157,051 + AO353_00720 0.75 +0.1 157,052 - AO353_00720 0.75 -1.3 157,052 - AO353_00720 0.75 +0.2 157,270 + AO353_00720 0.81 -0.4 157,270 + AO353_00720 0.81 +0.3 157,279 + AO353_00720 0.81 -0.2 157,279 + AO353_00720 0.81 -0.2 157,279 + AO353_00720 0.81 +0.3 157,279 + AO353_00720 0.81 -0.2 157,414 + AO353_00720 0.85 -0.1 157,414 + AO353_00720 0.85 -1.3 157,414 + AO353_00720 0.85 -2.2 157,414 + AO353_00720 0.85 -1.5 157,415 - AO353_00720 0.85 -0.4 157,415 - AO353_00720 0.85 -1.1 157,415 - AO353_00720 0.85 -0.4 157,510 + AO353_00720 0.88 -0.3 157,510 + AO353_00720 0.88 -0.6 157,585 + +0.1 157,585 + -0.4 157,585 + +0.9 157,586 - -2.9 157,588 + -0.4 157,588 + +0.7 157,588 + -1.0 157,588 + +1.3 157,588 + -0.5 157,588 + -0.7 157,588 + -0.8 157,588 + -0.4 157,589 - -1.1 157,589 - -1.8 157,589 - -2.3 157,589 - -0.3 157,589 - +3.5 157,589 - -0.1 157,589 - +0.4 157,589 - -0.4 157,589 - -1.8 157,589 - -0.4 157,589 - -0.5 157,589 - -1.6 157,589 - -0.8 157,589 - +0.2 157,649 - +0.1 157,649 - -0.4 157,724 + +1.1 157,725 - -0.9 157,859 + -0.4 157,859 + -0.3 157,983 + -1.4 157,983 + -2.3 157,984 - -1.6 157,984 - +0.1 158,103 + AO353_00725 0.26 -1.4 158,151 + AO353_00725 0.33 -1.0 158,151 + AO353_00725 0.33 -0.4 158,151 + AO353_00725 0.33 -0.4 158,152 - AO353_00725 0.33 +0.3 158,152 - AO353_00725 0.33 +0.4 158,152 - AO353_00725 0.33 -0.4 158,158 + AO353_00725 0.34 -0.7 158,232 + AO353_00725 0.45 -2.6 158,232 + AO353_00725 0.45 -1.4 158,232 + AO353_00725 0.45 +0.1 158,233 - AO353_00725 0.45 +0.3 158,325 + +1.1 158,325 + AO353_00725 0.59 -1.1 158,325 + AO353_00725 0.59 -1.7 158,325 + -0.3 158,325 + AO353_00725 0.59 -0.3 158,325 + AO353_00725 0.59 +0.1 158,325 + AO353_00725 0.59 -0.5 158,325 + AO353_00725 0.59 +0.3 158,325 + AO353_00725 0.59 +1.5 158,325 + AO353_00725 0.59 +0.1 158,325 + AO353_00725 0.59 -2.8 158,325 + AO353_00725 0.59 -1.6 158,325 + AO353_00725 0.59 +0.1 158,326 - AO353_00725 0.59 -0.4 158,326 - AO353_00725 0.59 +1.1 158,326 - AO353_00725 0.59 -0.1 158,326 - AO353_00725 0.59 -1.0 158,326 - AO353_00725 0.59 -0.6 158,621 - -1.0 158,637 - -1.6 158,707 + -1.3 158,707 + -1.1 158,708 - -1.1 158,708 - -0.3 158,708 - +0.3 158,732 + +0.0 158,732 + +0.5 158,732 + +1.6 158,732 + -0.1 158,732 + -0.8 158,732 + +1.1 158,732 + -0.7 158,732 + -0.2 158,732 + +0.3 158,733 - -1.3 158,733 - -0.3 158,733 - +0.5 158,733 - -1.5 158,733 - -1.1 158,733 - -0.6 158,733 - -1.5 158,758 + -1.1 158,758 + -0.2 158,772 + +0.3 158,772 + -0.5 158,772 + +0.7 158,773 - +0.3 158,773 - +0.6 158,810 - -0.7 158,837 + -0.5 158,838 - -0.4 158,872 + +0.4 158,872 + +0.3 158,876 + -1.3 158,877 - +0.1 158,877 - +0.6 158,931 + +1.2 158,931 + +0.2 158,931 + -0.5 158,931 + +0.1 158,931 + +0.7 158,931 + +0.5 158,932 - +0.8 158,932 - +1.1 158,932 - -0.2 158,932 - -0.9 158,999 + -1.1 159,000 - +0.6 159,000 - -0.6 159,492 + AO353_00730 0.44 -0.9 159,492 + AO353_00730 0.44 +1.2 159,492 + AO353_00730 0.44 -0.3 159,492 + AO353_00730 0.44 +0.6 159,492 + AO353_00730 0.44 -0.9 159,493 - AO353_00730 0.44 +1.3 159,493 - AO353_00730 0.44 -0.5 159,493 - AO353_00730 0.44 -0.0 159,493 - AO353_00730 0.44 -0.7 159,585 + AO353_00730 0.50 +0.4 159,585 + AO353_00730 0.50 -1.0 159,585 + AO353_00730 0.50 -1.5 159,585 + AO353_00730 0.50 -0.8 159,585 + AO353_00730 0.50 -1.3 159,586 - AO353_00730 0.50 -1.5 159,586 - AO353_00730 0.50 -1.0 159,586 - AO353_00730 0.50 -0.2
Or see this region's nucleotide sequence