Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00460 and AO353_00465 are separated by 252 nucleotides AO353_00465 and AO353_00470 are separated by 10 nucleotides AO353_00470 and AO353_00475 are separated by 106 nucleotides AO353_00475 and AO353_00480 are separated by 170 nucleotides
AO353_00460: AO353_00460 - TetR family transcriptional regulator, at 93,951 to 94,658
_00460
AO353_00465: AO353_00465 - LexA family transcriptional regulator, at 94,911 to 95,519
_00465
AO353_00470: AO353_00470 - CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase, at 95,530 to 96,003
_00470
AO353_00475: AO353_00475 - hypothetical protein, at 96,110 to 96,343
_00475
AO353_00480: AO353_00480 - hypothetical protein, at 96,514 to 97,071
_00480
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 94.693 kb on + strand at 94.693 kb on + strand at 94.693 kb on + strand at 94.694 kb on - strand at 94.694 kb on - strand at 94.694 kb on - strand at 94.694 kb on - strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.756 kb on + strand at 94.756 kb on + strand at 94.757 kb on - strand at 94.757 kb on - strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.763 kb on - strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.789 kb on - strand at 94.789 kb on - strand at 94.789 kb on - strand at 94.812 kb on + strand at 94.813 kb on - strand at 94.813 kb on - strand at 94.813 kb on - strand at 94.836 kb on + strand at 94.836 kb on + strand at 94.836 kb on + strand at 94.870 kb on - strand at 94.871 kb on + strand at 94.871 kb on + strand at 94.873 kb on + strand at 94.873 kb on + strand at 95.518 kb on - strand at 95.530 kb on - strand at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.832 kb on - strand, within AO353_00470 at 95.832 kb on - strand, within AO353_00470 at 95.832 kb on - strand, within AO353_00470 at 95.832 kb on - strand, within AO353_00470 at 95.906 kb on + strand, within AO353_00470 at 95.906 kb on + strand, within AO353_00470 at 95.906 kb on + strand, within AO353_00470 at 95.906 kb on + strand, within AO353_00470 at 95.906 kb on + strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.988 kb on + strand at 96.001 kb on + strand at 96.001 kb on + strand at 96.002 kb on - strand at 96.002 kb on - strand at 96.065 kb on - strand at 96.326 kb on + strand at 96.327 kb on - strand at 96.327 kb on - strand at 96.343 kb on + strand at 96.343 kb on + strand at 96.343 kb on + strand at 96.344 kb on - strand at 96.344 kb on - strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.379 kb on - strand at 96.379 kb on - strand at 96.433 kb on + strand at 96.477 kb on + strand at 96.531 kb on - strand at 96.531 kb on - strand at 96.601 kb on - strand, within AO353_00480 at 96.601 kb on - strand, within AO353_00480 at 96.612 kb on + strand, within AO353_00480 at 96.613 kb on - strand, within AO353_00480 at 96.658 kb on - strand, within AO353_00480 at 96.811 kb on + strand, within AO353_00480 at 96.812 kb on - strand, within AO353_00480 at 96.893 kb on + strand, within AO353_00480 at 96.893 kb on + strand, within AO353_00480 at 96.893 kb on + strand, within AO353_00480 at 96.894 kb on - strand at 96.894 kb on - strand, within AO353_00480 at 96.894 kb on - strand, within AO353_00480 at 96.894 kb on - strand, within AO353_00480 at 96.957 kb on - strand, within AO353_00480 at 96.957 kb on - strand, within AO353_00480
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 94,693 + -0.6 94,693 + -0.4 94,693 + -1.0 94,694 - -0.5 94,694 - +1.4 94,694 - -0.2 94,694 - -0.5 94,752 + +2.7 94,752 + -0.3 94,752 + +1.1 94,752 + -2.0 94,752 + +0.7 94,752 + +0.7 94,752 + +0.9 94,752 + -0.5 94,752 + +2.2 94,752 + +0.3 94,753 - -0.7 94,753 - -0.5 94,753 - -0.1 94,753 - +0.5 94,753 - +0.1 94,753 - +1.5 94,753 - +0.8 94,756 + -0.3 94,756 + +1.2 94,757 - +0.5 94,757 - -0.3 94,762 + -0.6 94,762 + +0.6 94,762 + +0.6 94,762 + +1.5 94,762 + -0.1 94,762 + -0.5 94,762 + +2.2 94,763 - +0.4 94,788 + +1.0 94,788 + +0.1 94,788 + +0.4 94,788 + +1.3 94,788 + +0.8 94,789 - -1.0 94,789 - +0.4 94,789 - -0.1 94,812 + -0.3 94,813 - +0.8 94,813 - +0.4 94,813 - -0.5 94,836 + +1.3 94,836 + +0.2 94,836 + +0.1 94,870 - -1.6 94,871 + -0.6 94,871 + +0.2 94,873 + +0.7 94,873 + +0.6 95,518 - -0.4 95,530 - -0.5 95,831 + AO353_00470 0.64 +0.1 95,831 + AO353_00470 0.64 +0.7 95,831 + AO353_00470 0.64 -0.3 95,831 + AO353_00470 0.64 +2.3 95,831 + AO353_00470 0.64 +4.3 95,831 + AO353_00470 0.64 +1.5 95,831 + AO353_00470 0.64 +0.6 95,831 + AO353_00470 0.64 -0.9 95,831 + AO353_00470 0.64 +0.1 95,832 - AO353_00470 0.64 +0.1 95,832 - AO353_00470 0.64 +1.3 95,832 - AO353_00470 0.64 -0.8 95,832 - AO353_00470 0.64 +0.3 95,906 + AO353_00470 0.79 -1.5 95,906 + AO353_00470 0.79 +0.5 95,906 + AO353_00470 0.79 -0.5 95,906 + AO353_00470 0.79 -1.2 95,906 + AO353_00470 0.79 -0.0 95,907 - AO353_00470 0.80 -0.1 95,907 - AO353_00470 0.80 -0.3 95,907 - AO353_00470 0.80 +1.1 95,907 - AO353_00470 0.80 -0.5 95,907 - AO353_00470 0.80 +0.7 95,907 - AO353_00470 0.80 +0.5 95,988 + +3.3 96,001 + +0.3 96,001 + +0.4 96,002 - +0.2 96,002 - +0.4 96,065 - -0.4 96,326 + +0.1 96,327 - +0.6 96,327 - +1.1 96,343 + -0.7 96,343 + +0.1 96,343 + +1.0 96,344 - -0.2 96,344 - +1.8 96,374 + -0.2 96,374 + -1.0 96,374 + +0.2 96,374 + -1.1 96,374 + +1.1 96,374 + +0.7 96,374 + +1.3 96,374 + +1.6 96,374 + -0.1 96,374 + -0.3 96,375 - +0.1 96,375 - +0.2 96,375 - +0.2 96,375 - -1.4 96,375 - +0.1 96,375 - -0.2 96,375 - +1.1 96,375 - +0.9 96,375 - +0.5 96,375 - -1.3 96,375 - -0.7 96,375 - -0.8 96,375 - -0.6 96,375 - +0.2 96,375 - -0.9 96,376 + -0.8 96,376 + +1.1 96,376 + +0.5 96,376 + +0.4 96,376 + -0.5 96,376 + +0.2 96,376 + +0.1 96,376 + +0.1 96,376 + -0.1 96,376 + +0.4 96,376 + -0.3 96,377 - -0.9 96,377 - +1.2 96,377 - -1.2 96,377 - -0.4 96,377 - -0.4 96,377 - -0.7 96,377 - +0.1 96,377 - -0.1 96,377 - -1.6 96,377 - -1.7 96,377 - -0.3 96,377 - -1.5 96,377 - -0.9 96,377 - -0.7 96,377 - -0.8 96,377 - -1.4 96,377 - -0.9 96,377 - +0.7 96,377 - +0.5 96,377 - +0.4 96,377 - -0.3 96,377 - -0.9 96,377 - -0.4 96,377 - +0.1 96,377 - +0.1 96,378 + -1.3 96,378 + +0.7 96,378 + -0.5 96,378 + -0.6 96,378 + -0.3 96,378 + +0.1 96,379 - -0.1 96,379 - +0.1 96,433 + -0.1 96,477 + -2.2 96,531 - +0.1 96,531 - -2.0 96,601 - AO353_00480 0.16 -0.7 96,601 - AO353_00480 0.16 +0.1 96,612 + AO353_00480 0.18 +1.3 96,613 - AO353_00480 0.18 -0.8 96,658 - AO353_00480 0.26 -0.6 96,811 + AO353_00480 0.53 -1.6 96,812 - AO353_00480 0.53 +0.6 96,893 + AO353_00480 0.68 -2.2 96,893 + AO353_00480 0.68 -1.1 96,893 + AO353_00480 0.68 -0.3 96,894 - -0.5 96,894 - AO353_00480 0.68 -0.1 96,894 - AO353_00480 0.68 -0.7 96,894 - AO353_00480 0.68 +2.5 96,957 - AO353_00480 0.79 +0.5 96,957 - AO353_00480 0.79 +1.8
Or see this region's nucleotide sequence