Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001572

Experiment: D-Cellobiose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cellobiose (C)
1,749,839	+		ABIE53_001570	0.69	-0.4
1,749,839	+		ABIE53_001570	0.69	-0.2
1,749,839	+		ABIE53_001570	0.69	-1.3
1,749,839	+		ABIE53_001570	0.69	-0.2
1,749,840	-		ABIE53_001570	0.69	+0.1
1,749,840	-		ABIE53_001570	0.69	+0.5
1,749,840	-		ABIE53_001570	0.69	-0.1
1,749,840	-		ABIE53_001570	0.69	-2.5
1,749,840	-		ABIE53_001570	0.69	-1.1
1,749,882	-		ABIE53_001570	0.76	-0.1
1,749,929	-		ABIE53_001570	0.84	-0.1
1,750,275	+		ABIE53_001571	0.32	-0.1
1,750,275	+		ABIE53_001571	0.32	+0.9
1,750,275	+		ABIE53_001571	0.32	-3.5
1,750,275	+		ABIE53_001571	0.32	+0.0
1,750,275	+		ABIE53_001571	0.32	+1.0
1,750,276	-		ABIE53_001571	0.32	-0.5
1,750,276	-		ABIE53_001571	0.32	-0.4
1,750,276	-		ABIE53_001571	0.32	-0.1
1,750,325	+		ABIE53_001571	0.39	-1.3
1,750,325	+		ABIE53_001571	0.39	-1.3
1,750,379	+		ABIE53_001571	0.46	-2.2
1,750,379	+		ABIE53_001571	0.46	-1.7
1,750,380	-		ABIE53_001571	0.46	-0.1
1,750,380	-		ABIE53_001571	0.46	-0.5
1,750,380	-		ABIE53_001571	0.46	-1.9
1,750,380	-		ABIE53_001571	0.46	-1.1
1,750,380	-		ABIE53_001571	0.46	-2.8
1,750,380	-		ABIE53_001571	0.46	-0.8
1,750,561	-		ABIE53_001571	0.70	-1.7
1,750,602	+		ABIE53_001571	0.75	-1.1
1,750,602	+		ABIE53_001571	0.75	-1.7
1,750,602	+		ABIE53_001571	0.75	-2.2
1,750,603	-		ABIE53_001571	0.75	+0.2
1,750,603	-		ABIE53_001571	0.75	-0.3
1,750,706	+		ABIE53_001571	0.89	-1.7
1,750,719	-				-1.1
1,750,719	-				-1.9
1,750,784	+				-2.4
1,750,784	+				-1.7
1,750,784	+				-1.3
1,750,784	+				-1.8
1,750,785	-				-1.8
1,750,785	-				-1.9
1,750,785	-				-0.5
1,750,785	-				+0.0
1,750,785	-				-1.9
1,750,785	-				-1.6
1,750,785	-				-1.3
1,750,785	-				-1.6
1,750,827	+				-1.8
1,750,827	+				-1.3
1,750,827	+				-1.4
1,750,828	-				-0.8
1,750,828	-				+1.1
1,750,828	-				-0.9
1,750,851	+		ABIE53_001572	0.19	-2.5
1,750,851	+		ABIE53_001572	0.19	-2.4
1,750,851	+		ABIE53_001572	0.19	-1.5
1,750,851	+		ABIE53_001572	0.19	-1.6
1,750,851	+		ABIE53_001572	0.19	-2.1
1,750,852	-		ABIE53_001572	0.20	-0.8
1,750,852	-		ABIE53_001572	0.20	-1.6
1,750,877	+		ABIE53_001572	0.31	+0.2
1,750,877	+		ABIE53_001572	0.31	-1.8
1,751,231	+				+0.5
1,751,231	+				-0.8
1,751,231	+				-1.5
1,751,231	+				+2.5
1,751,231	+				-2.6
1,751,231	+				+1.0
1,751,232	-				-0.1
1,751,232	-				+0.2
1,751,232	-				-0.2
1,751,232	-				-0.6
1,751,232	-				+0.1
1,751,232	-				-0.0
1,751,347	+		ABIE53_001573	0.15	-1.1
1,751,347	+		ABIE53_001573	0.15	+0.9
1,751,347	+		ABIE53_001573	0.15	-1.3
1,751,347	+		ABIE53_001573	0.15	-0.9
1,751,347	+		ABIE53_001573	0.15	+2.1
1,751,347	+		ABIE53_001573	0.15	+0.3
1,751,347	+		ABIE53_001573	0.15	-1.6
1,751,347	+		ABIE53_001573	0.15	-2.1
1,751,347	+		ABIE53_001573	0.15	+1.3
1,751,348	-		ABIE53_001573	0.15	-0.5
1,751,348	-		ABIE53_001573	0.15	+1.3
1,751,348	-		ABIE53_001573	0.15	-1.4
1,751,348	-		ABIE53_001573	0.15	-0.3
1,751,348	-		ABIE53_001573	0.15	-0.7
1,751,348	-		ABIE53_001573	0.15	-0.8
1,751,348	-		ABIE53_001573	0.15	-1.7
1,751,348	-		ABIE53_001573	0.15	+1.8
1,751,348	-		ABIE53_001573	0.15	+1.0
1,751,348	-		ABIE53_001573	0.15	-0.6
1,751,348	-		ABIE53_001573	0.15	+0.1
1,751,348	-		ABIE53_001573	0.15	+0.5
1,751,348	-		ABIE53_001573	0.15	+0.4
1,751,348	-		ABIE53_001573	0.15	+0.5
1,751,359	-		ABIE53_001573	0.17	-0.3
1,751,557	+		ABIE53_001573	0.42	-0.2
1,751,557	+		ABIE53_001573	0.42	-0.6
1,751,557	+		ABIE53_001573	0.42	-0.6
1,751,557	+		ABIE53_001573	0.42	-0.4
1,751,557	+		ABIE53_001573	0.42	-0.2
1,751,557	+		ABIE53_001573	0.42	-2.3
1,751,557	+		ABIE53_001573	0.42	-1.1
1,751,557	+		ABIE53_001573	0.42	-0.6
1,751,557	+		ABIE53_001573	0.42	-0.7
1,751,557	+		ABIE53_001573	0.42	-1.3
1,751,557	+		ABIE53_001573	0.42	+0.5
1,751,557	+		ABIE53_001573	0.42	+0.3
1,751,557	+		ABIE53_001573	0.42	-0.5
1,751,557	+		ABIE53_001573	0.42	+0.5
1,751,557	+		ABIE53_001573	0.42	+0.9
1,751,558	-		ABIE53_001573	0.42	-0.2
1,751,558	-		ABIE53_001573	0.42	+0.4
1,751,558	-		ABIE53_001573	0.42	+0.9
1,751,558	-		ABIE53_001573	0.42	+0.8
1,751,558	-		ABIE53_001573	0.42	+0.5
1,751,558	-		ABIE53_001573	0.42	-1.2
1,751,583	+		ABIE53_001573	0.45	+0.3
1,751,583	+		ABIE53_001573	0.45	-0.5
1,751,583	+		ABIE53_001573	0.45	-1.5
1,751,583	+		ABIE53_001573	0.45	+1.9
1,751,583	+		ABIE53_001573	0.45	-1.2
1,751,584	-		ABIE53_001573	0.45	-0.9
1,751,584	-		ABIE53_001573	0.45	-0.5
1,751,608	+		ABIE53_001573	0.49	-0.8
1,751,608	+		ABIE53_001573	0.49	-0.4
1,751,608	+		ABIE53_001573	0.49	-1.3
1,751,608	+		ABIE53_001573	0.49	-0.2
1,751,608	+		ABIE53_001573	0.49	-0.3
1,751,608	+		ABIE53_001573	0.49	-0.6
1,751,608	+		ABIE53_001573	0.49	-0.7
1,751,609	-		ABIE53_001573	0.49	-0.5
1,751,609	-		ABIE53_001573	0.49	+1.5
1,751,609	-		ABIE53_001573	0.49	+1.5
1,751,609	-		ABIE53_001573	0.49	-0.3
1,751,609	-		ABIE53_001573	0.49	-0.1
1,751,609	-		ABIE53_001573	0.49	-1.3
1,751,653	-		ABIE53_001573	0.54	-0.1
1,751,689	+		ABIE53_001573	0.59	-0.3
1,751,722	-		ABIE53_001573	0.63	+0.6
1,751,722	-		ABIE53_001573	0.63	+0.7
1,751,825	-		ABIE53_001573	0.76	-1.0
1,751,844	+		ABIE53_001573	0.79	-1.1
1,751,845	-		ABIE53_001573	0.79	-1.3
1,751,860	+		ABIE53_001573	0.81	-0.4
1,751,860	+		ABIE53_001573	0.81	+0.5
1,751,861	-		ABIE53_001573	0.81	-0.1
1,751,932	+				+0.1
1,751,932	+				-1.0
1,751,932	+				+0.7
1,751,933	-				-0.1
1,751,933	-				+0.8
1,751,962	+				-1.0
1,751,962	+				+0.8
1,751,962	+				+0.2
1,751,963	-				+0.8
1,751,963	-				+1.1
1,752,011	+				-0.8
1,752,011	+				-1.1
1,752,013	+				-0.4
1,752,013	+				-0.1
1,752,013	+				-1.1
1,752,013	+				+1.2
1,752,013	+				+1.1
1,752,013	+				+1.5
1,752,013	+				-1.8
1,752,013	+				+1.3
1,752,013	+				-0.5
1,752,013	+				-0.8
1,752,013	+				-0.5