Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001225

Experiment: D-Cellobiose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cellobiose (C)
1,367,673	-		ABIE53_001224	0.18	-0.6
1,367,673	-		ABIE53_001224	0.18	-0.7
1,367,673	-		ABIE53_001224	0.18	-1.1
1,367,731	-		ABIE53_001224	0.23	+0.3
1,367,742	+		ABIE53_001224	0.24	+0.3
1,367,742	+		ABIE53_001224	0.24	+0.6
1,367,742	+		ABIE53_001224	0.24	-0.3
1,367,895	+		ABIE53_001224	0.37	+0.4
1,367,896	-		ABIE53_001224	0.37	+0.9
1,367,909	-		ABIE53_001224	0.39	-1.5
1,367,910	+		ABIE53_001224	0.39	-0.5
1,367,910	+		ABIE53_001224	0.39	-1.1
1,367,910	+		ABIE53_001224	0.39	+0.5
1,368,038	-		ABIE53_001224	0.50	-1.3
1,368,038	-		ABIE53_001224	0.50	-0.6
1,368,039	+		ABIE53_001224	0.50	+1.9
1,368,040	-		ABIE53_001224	0.50	-0.5
1,368,040	-		ABIE53_001224	0.50	-1.3
1,368,040	-		ABIE53_001224	0.50	-0.5
1,368,154	+		ABIE53_001224	0.60	-0.5
1,368,155	-		ABIE53_001224	0.60	-0.4
1,368,168	+		ABIE53_001224	0.61	-0.6
1,368,168	+		ABIE53_001224	0.61	-0.8
1,368,168	+		ABIE53_001224	0.61	+0.8
1,368,168	+		ABIE53_001224	0.61	+0.1
1,368,168	+		ABIE53_001224	0.61	+1.5
1,368,168	+		ABIE53_001224	0.61	+0.9
1,368,168	+		ABIE53_001224	0.61	-1.8
1,368,169	-		ABIE53_001224	0.61	-0.1
1,368,169	-		ABIE53_001224	0.61	-0.8
1,368,169	-		ABIE53_001224	0.61	-0.5
1,368,216	+		ABIE53_001224	0.65	-0.2
1,368,216	+		ABIE53_001224	0.65	-1.4
1,368,216	+		ABIE53_001224	0.65	-0.9
1,368,216	+		ABIE53_001224	0.65	+0.1
1,368,216	+		ABIE53_001224	0.65	+0.9
1,368,217	-		ABIE53_001224	0.65	-0.5
1,368,217	-		ABIE53_001224	0.65	-1.0
1,368,217	-		ABIE53_001224	0.65	-0.8
1,368,430	+		ABIE53_001224	0.83	+1.5
1,368,430	+		ABIE53_001224	0.83	-0.8
1,368,431	-		ABIE53_001224	0.83	-0.3
1,368,431	-		ABIE53_001224	0.83	+0.8
1,368,431	-		ABIE53_001224	0.83	-0.1
1,368,433	-		ABIE53_001224	0.84	-1.5
1,368,610	+				-0.1
1,368,610	+				-2.6
1,368,611	-				+1.5
1,368,752	+				-0.5
1,368,753	-				-2.8
1,368,754	+				-1.7
1,368,754	+				+0.5
1,368,754	+				-2.2
1,368,755	-				-1.5
1,368,755	-				-0.8
1,368,755	-				-1.8
1,368,755	-				-1.8
1,368,760	+				-2.9
1,368,760	+				-1.4
1,368,760	+				-2.1
1,368,760	+				+0.5
1,368,760	+				-0.5
1,368,760	+				-2.7
1,368,760	+				+0.5
1,368,761	-		ABIE53_001225	0.10	-0.1
1,368,761	-		ABIE53_001225	0.10	-2.0
1,368,761	-		ABIE53_001225	0.10	-1.1
1,368,761	-		ABIE53_001225	0.10	-1.8
1,368,772	+		ABIE53_001225	0.11	-0.8
1,368,772	+		ABIE53_001225	0.11	-4.0
1,368,910	+		ABIE53_001225	0.26	-1.3
1,368,910	+		ABIE53_001225	0.26	-0.1
1,368,910	+		ABIE53_001225	0.26	-2.6
1,368,911	-		ABIE53_001225	0.26	-2.1
1,368,911	-		ABIE53_001225	0.26	-1.8
1,368,911	-		ABIE53_001225	0.26	-1.1
1,369,018	+		ABIE53_001225	0.37	-3.3
1,369,019	-		ABIE53_001225	0.37	-1.3
1,369,142	+		ABIE53_001225	0.51	-4.4
1,369,143	-		ABIE53_001225	0.51	-0.8
1,369,144	+		ABIE53_001225	0.51	-2.8
1,369,144	+		ABIE53_001225	0.51	-4.0
1,369,144	+		ABIE53_001225	0.51	-0.8
1,369,145	-		ABIE53_001225	0.51	+0.5
1,369,145	-		ABIE53_001225	0.51	-2.1
1,369,291	+		ABIE53_001225	0.66	-2.6
1,369,348	+		ABIE53_001225	0.72	-2.4
1,369,349	-		ABIE53_001225	0.73	-0.8
1,369,392	-		ABIE53_001225	0.77	-2.3
1,369,526	+				-0.8
1,369,526	+				-2.5
1,369,526	+				-1.7
1,369,526	+				-2.1
1,369,607	+				+1.5
1,369,608	-				-0.4
1,369,665	-				+0.9
1,369,697	-				-1.1
1,369,702	+				-0.3
1,369,702	+				-0.7
1,369,703	-				-1.1
1,369,703	-				+0.2
1,369,709	+				+0.3
1,369,710	-				-1.7
1,369,710	-				-2.4
1,369,710	-				+0.3
1,369,711	+				-1.0
1,369,711	+				+0.1
1,369,726	+				-1.7
1,369,726	+				-1.8
1,369,726	+				+1.2
1,369,726	+				-0.2
1,369,726	+				-0.2
1,369,726	+				-1.7
1,369,726	+				-1.7
1,369,726	+				-1.6
1,369,726	+				+0.2
1,369,726	+				-0.0
1,369,726	+				+1.3
1,369,727	-				-2.8
1,369,727	-				-1.3
1,369,727	-				-0.8
1,369,733	-				-3.2
1,369,733	-				-2.4
1,369,846	+				-2.3
1,369,846	+				+0.9
1,369,846	+				-1.3
1,369,846	+				-1.2
1,369,846	+				-2.6
1,369,846	+				-0.1
1,369,847	-				-2.3
1,369,847	-				-0.8
1,369,852	+				-1.1
1,369,852	+				-0.8
1,369,852	+				-1.7
1,369,852	+				-3.1
1,369,852	+				-2.2
1,369,853	-				-0.5
1,369,853	-				+0.2
1,369,862	-				-0.1
1,369,978	+				-1.5
1,369,978	+				-0.5
1,369,978	+				-4.0
1,369,978	+				-3.0
1,369,978	+				-3.3
1,369,978	+				-1.3
1,369,978	+				-1.3
1,369,979	-				-0.5
1,369,981	+				+1.5
1,369,981	+				-2.5
1,369,981	+				-1.1
1,369,982	-				-3.0
1,369,982	-				-2.9
1,369,996	+				-2.2
1,369,996	+				-0.5
1,369,996	+				-1.5
1,369,996	+				-0.5
1,369,996	+				-1.8
1,369,996	+				-2.4
1,369,996	+				-0.1
1,369,996	+				-1.7
1,369,996	+				-3.7
1,369,996	+				+0.5
1,369,997	-				-2.1
1,369,997	-				-0.8
1,369,997	-				-1.1
1,369,997	-				-0.1
1,369,997	-				-1.0
1,370,119	+		ABIE53_001226	0.16	-1.8
1,370,119	+		ABIE53_001226	0.16	-2.2
1,370,119	+		ABIE53_001226	0.16	-2.1
1,370,119	+		ABIE53_001226	0.16	-4.4
1,370,120	-		ABIE53_001226	0.16	-2.5
1,370,120	-		ABIE53_001226	0.16	-2.0
1,370,221	-		ABIE53_001226	0.23	+0.5
1,370,404	+		ABIE53_001226	0.33	+0.5
1,370,404	+		ABIE53_001226	0.33	-3.7
1,370,404	+		ABIE53_001226	0.33	-2.8
1,370,405	-		ABIE53_001226	0.33	-1.7
1,370,405	-		ABIE53_001226	0.33	-0.5
1,370,405	-		ABIE53_001226	0.33	-2.6
1,370,405	-		ABIE53_001226	0.33	-1.7
1,370,527	+		ABIE53_001226	0.41	-0.8
1,370,527	+		ABIE53_001226	0.41	-2.5
1,370,527	+		ABIE53_001226	0.41	-2.5
1,370,528	-		ABIE53_001226	0.41	-0.1
1,370,528	-		ABIE53_001226	0.41	-2.0
1,370,551	+		ABIE53_001226	0.42	-3.3
1,370,560	+		ABIE53_001226	0.43	-2.5
1,370,581	+		ABIE53_001226	0.44	+0.5
1,370,581	+		ABIE53_001226	0.44	-4.8
1,370,581	+		ABIE53_001226	0.44	-1.7
1,370,581	+		ABIE53_001226	0.44	-0.7
1,370,581	+		ABIE53_001226	0.44	-3.7
1,370,581	+		ABIE53_001226	0.44	-0.1
1,370,581	+		ABIE53_001226	0.44	-2.3
1,370,581	+		ABIE53_001226	0.44	-0.5
1,370,581	+		ABIE53_001226	0.44	-2.1
1,370,581	+		ABIE53_001226	0.44	-0.8
1,370,581	+		ABIE53_001226	0.44	-0.7
1,370,582	-		ABIE53_001226	0.44	-1.3
1,370,582	-		ABIE53_001226	0.44	-1.7
1,370,582	-		ABIE53_001226	0.44	-2.1
1,370,582	-		ABIE53_001226	0.44	-1.5
1,370,582	-		ABIE53_001226	0.44	+0.8
1,370,582	-		ABIE53_001226	0.44	-0.1