Strain Fitness in Pantoea sp. MT58 around IAI47_15950

Experiment: Nickel (II) chloride 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_15945 and IAI47_15950 overlap by 7 nucleotidesIAI47_15950 and IAI47_15955 overlap by 4 nucleotides IAI47_15945: IAI47_15945 - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 3,366,386 to 3,367,468 _15945 IAI47_15950: IAI47_15950 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 3,367,462 to 3,368,820 _15950 IAI47_15955: IAI47_15955 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 3,368,817 to 3,370,304 _15955 Position (kb) 3367 3368 3369Strain fitness (log2 ratio) -1 0 1at 3367.484 kb on - strandat 3367.484 kb on - strandat 3367.484 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.493 kb on - strandat 3367.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 40 uM, aerobic
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3,367,484 - +1.3
3,367,484 - -0.3
3,367,484 - -0.3
3,367,493 - +0.5
3,367,493 - +1.3
3,367,493 - +0.1
3,367,493 - +1.1
3,367,493 - +0.3
3,367,493 - -1.1
3,367,493 - +0.8
3,367,493 - +0.9
3,367,496 - +1.0

Or see this region's nucleotide sequence