Strain Fitness in Rahnella sp. WP5 around EX31_RS22750

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22745 and EX31_RS22750 are separated by 56 nucleotidesEX31_RS22750 and EX31_RS22755 are separated by 219 nucleotides EX31_RS22745: EX31_RS22745 - outer membrane protein assembly factor BamC, at 308,510 to 309,589 _RS22745 EX31_RS22750: EX31_RS22750 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 309,646 to 310,359 _RS22750 EX31_RS22755: EX31_RS22755 - hypothetical protein, at 310,579 to 311,454 _RS22755 Position (kb) 309 310 311Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 308.660 kb on + strand, within EX31_RS22745at 308.661 kb on - strand, within EX31_RS22745at 308.732 kb on + strand, within EX31_RS22745at 308.732 kb on + strand, within EX31_RS22745at 308.732 kb on + strand, within EX31_RS22745at 308.732 kb on + strand, within EX31_RS22745at 308.732 kb on + strand, within EX31_RS22745at 308.732 kb on + strand, within EX31_RS22745at 308.732 kb on + strand, within EX31_RS22745at 308.732 kb on + strand, within EX31_RS22745at 308.732 kb on + strand, within EX31_RS22745at 308.732 kb on + strand, within EX31_RS22745at 308.733 kb on - strand, within EX31_RS22745at 308.733 kb on - strand, within EX31_RS22745at 308.733 kb on - strand, within EX31_RS22745at 308.896 kb on + strand, within EX31_RS22745at 309.011 kb on + strand, within EX31_RS22745at 309.050 kb on + strand, within EX31_RS22745at 309.050 kb on + strand, within EX31_RS22745at 309.051 kb on - strand, within EX31_RS22745at 309.131 kb on + strand, within EX31_RS22745at 309.131 kb on + strand, within EX31_RS22745at 309.187 kb on + strand, within EX31_RS22745at 309.187 kb on + strand, within EX31_RS22745at 309.284 kb on + strand, within EX31_RS22745at 309.380 kb on + strand, within EX31_RS22745at 309.381 kb on - strand, within EX31_RS22745at 309.449 kb on + strand, within EX31_RS22745at 309.449 kb on + strand, within EX31_RS22745at 309.481 kb on + strand, within EX31_RS22745at 309.484 kb on + strandat 309.484 kb on + strandat 309.484 kb on + strandat 309.587 kb on + strandat 309.590 kb on + strandat 309.590 kb on + strandat 309.614 kb on + strandat 309.614 kb on + strandat 309.614 kb on + strandat 309.614 kb on + strandat 309.614 kb on + strandat 309.614 kb on + strandat 309.615 kb on - strandat 309.637 kb on + strandat 309.641 kb on + strandat 309.641 kb on + strandat 309.641 kb on + strandat 309.642 kb on - strandat 309.656 kb on + strandat 309.667 kb on + strandat 309.738 kb on + strand, within EX31_RS22750at 309.738 kb on + strand, within EX31_RS22750at 309.739 kb on - strand, within EX31_RS22750at 309.793 kb on - strand, within EX31_RS22750at 309.798 kb on + strand, within EX31_RS22750at 309.798 kb on + strand, within EX31_RS22750at 309.822 kb on + strand, within EX31_RS22750at 309.822 kb on + strand, within EX31_RS22750at 309.951 kb on - strand, within EX31_RS22750at 310.111 kb on + strand, within EX31_RS22750at 310.111 kb on + strand, within EX31_RS22750at 310.111 kb on + strand, within EX31_RS22750at 310.112 kb on - strand, within EX31_RS22750at 310.112 kb on - strand, within EX31_RS22750at 310.357 kb on + strandat 310.357 kb on + strandat 310.446 kb on + strandat 310.446 kb on + strandat 310.447 kb on - strandat 310.447 kb on - strandat 310.489 kb on + strandat 310.510 kb on + strandat 310.510 kb on + strandat 310.510 kb on + strandat 310.510 kb on + strandat 310.510 kb on + strandat 310.511 kb on - strandat 310.511 kb on - strandat 310.529 kb on + strandat 310.532 kb on + strandat 310.532 kb on + strandat 310.533 kb on - strandat 310.533 kb on - strandat 310.549 kb on + strandat 310.549 kb on + strandat 310.574 kb on + strandat 310.574 kb on + strandat 310.574 kb on + strandat 310.574 kb on + strandat 310.574 kb on + strandat 310.578 kb on + strandat 310.578 kb on + strandat 310.578 kb on + strandat 310.578 kb on + strandat 310.578 kb on + strandat 310.578 kb on + strandat 310.578 kb on + strandat 310.578 kb on + strandat 310.578 kb on + strandat 310.578 kb on + strandat 310.579 kb on - strandat 310.579 kb on - strandat 310.579 kb on - strandat 310.579 kb on - strandat 310.579 kb on - strandat 310.579 kb on - strandat 310.613 kb on + strandat 310.613 kb on + strandat 310.613 kb on + strandat 310.613 kb on + strandat 310.613 kb on + strandat 310.614 kb on - strandat 310.614 kb on - strandat 310.733 kb on - strand, within EX31_RS22755at 310.906 kb on + strand, within EX31_RS22755at 310.907 kb on - strand, within EX31_RS22755at 310.907 kb on - strand, within EX31_RS22755at 310.907 kb on - strand, within EX31_RS22755at 310.907 kb on - strand, within EX31_RS22755at 310.930 kb on + strand, within EX31_RS22755at 310.931 kb on - strand, within EX31_RS22755at 310.931 kb on - strand, within EX31_RS22755at 310.931 kb on - strand, within EX31_RS22755at 310.931 kb on - strand, within EX31_RS22755at 310.987 kb on + strand, within EX31_RS22755at 310.988 kb on - strand, within EX31_RS22755at 311.011 kb on + strand, within EX31_RS22755at 311.011 kb on + strand, within EX31_RS22755at 311.011 kb on + strand, within EX31_RS22755at 311.011 kb on + strand, within EX31_RS22755at 311.011 kb on + strand, within EX31_RS22755at 311.012 kb on - strand, within EX31_RS22755at 311.012 kb on - strand, within EX31_RS22755at 311.012 kb on - strand, within EX31_RS22755at 311.013 kb on + strand, within EX31_RS22755at 311.029 kb on + strand, within EX31_RS22755at 311.177 kb on + strand, within EX31_RS22755at 311.178 kb on - strand, within EX31_RS22755at 311.204 kb on + strand, within EX31_RS22755at 311.205 kb on - strand, within EX31_RS22755

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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308,660 + EX31_RS22745 0.14 -1.2
308,661 - EX31_RS22745 0.14 -1.4
308,732 + EX31_RS22745 0.21 -0.9
308,732 + EX31_RS22745 0.21 +0.2
308,732 + EX31_RS22745 0.21 +0.3
308,732 + EX31_RS22745 0.21 +0.8
308,732 + EX31_RS22745 0.21 +1.5
308,732 + EX31_RS22745 0.21 +0.0
308,732 + EX31_RS22745 0.21 -0.9
308,732 + EX31_RS22745 0.21 -0.5
308,732 + EX31_RS22745 0.21 -0.1
308,732 + EX31_RS22745 0.21 +0.8
308,733 - EX31_RS22745 0.21 -1.1
308,733 - EX31_RS22745 0.21 -2.6
308,733 - EX31_RS22745 0.21 -1.9
308,896 + EX31_RS22745 0.36 +0.3
309,011 + EX31_RS22745 0.46 -1.7
309,050 + EX31_RS22745 0.50 +0.1
309,050 + EX31_RS22745 0.50 -0.9
309,051 - EX31_RS22745 0.50 -2.8
309,131 + EX31_RS22745 0.57 +0.2
309,131 + EX31_RS22745 0.57 -0.9
309,187 + EX31_RS22745 0.63 -0.2
309,187 + EX31_RS22745 0.63 +0.3
309,284 + EX31_RS22745 0.72 -1.1
309,380 + EX31_RS22745 0.81 +0.2
309,381 - EX31_RS22745 0.81 -0.7
309,449 + EX31_RS22745 0.87 +0.4
309,449 + EX31_RS22745 0.87 -0.8
309,481 + EX31_RS22745 0.90 -0.2
309,484 + +0.1
309,484 + +0.5
309,484 + +0.3
309,587 + -0.6
309,590 + +0.7
309,590 + -0.2
309,614 + -0.6
309,614 + -1.6
309,614 + -0.0
309,614 + -1.9
309,614 + -0.1
309,614 + -0.6
309,615 - -1.3
309,637 + -1.3
309,641 + -2.8
309,641 + -2.2
309,641 + -1.9
309,642 - -2.3
309,656 + -2.6
309,667 + -1.6
309,738 + EX31_RS22750 0.13 -3.3
309,738 + EX31_RS22750 0.13 -1.9
309,739 - EX31_RS22750 0.13 -1.4
309,793 - EX31_RS22750 0.21 -3.0
309,798 + EX31_RS22750 0.21 -2.4
309,798 + EX31_RS22750 0.21 -2.6
309,822 + EX31_RS22750 0.25 -3.1
309,822 + EX31_RS22750 0.25 -2.1
309,951 - EX31_RS22750 0.43 -0.7
310,111 + EX31_RS22750 0.65 -2.1
310,111 + EX31_RS22750 0.65 -1.8
310,111 + EX31_RS22750 0.65 -2.0
310,112 - EX31_RS22750 0.65 -0.4
310,112 - EX31_RS22750 0.65 -2.3
310,357 + +1.0
310,357 + -0.0
310,446 + +0.0
310,446 + -0.4
310,447 - +1.6
310,447 - +2.2
310,489 + +1.2
310,510 + +0.6
310,510 + +0.7
310,510 + +0.7
310,510 + -0.7
310,510 + -0.0
310,511 - +0.9
310,511 - -0.6
310,529 + -0.5
310,532 + -0.4
310,532 + -1.0
310,533 - +1.2
310,533 - -1.3
310,549 + +0.8
310,549 + -0.7
310,574 + -1.7
310,574 + -0.3
310,574 + -0.1
310,574 + -0.9
310,574 + +0.8
310,578 + -0.6
310,578 + +1.4
310,578 + -0.4
310,578 + +0.3
310,578 + -2.7
310,578 + -1.9
310,578 + -0.1
310,578 + -0.4
310,578 + +0.6
310,578 + +1.3
310,579 - -0.8
310,579 - +1.2
310,579 - +0.0
310,579 - +0.5
310,579 - -1.3
310,579 - -0.9
310,613 + +0.8
310,613 + +0.2
310,613 + +2.1
310,613 + +0.4
310,613 + -1.4
310,614 - -0.1
310,614 - -0.6
310,733 - EX31_RS22755 0.18 -0.0
310,906 + EX31_RS22755 0.37 -1.8
310,907 - EX31_RS22755 0.37 +0.4
310,907 - EX31_RS22755 0.37 +0.8
310,907 - EX31_RS22755 0.37 +0.7
310,907 - EX31_RS22755 0.37 -0.8
310,930 + EX31_RS22755 0.40 +0.3
310,931 - EX31_RS22755 0.40 +1.1
310,931 - EX31_RS22755 0.40 -0.9
310,931 - EX31_RS22755 0.40 +0.9
310,931 - EX31_RS22755 0.40 -0.2
310,987 + EX31_RS22755 0.47 +0.9
310,988 - EX31_RS22755 0.47 -1.2
311,011 + EX31_RS22755 0.49 -1.1
311,011 + EX31_RS22755 0.49 +0.4
311,011 + EX31_RS22755 0.49 +0.3
311,011 + EX31_RS22755 0.49 +0.4
311,011 + EX31_RS22755 0.49 -0.8
311,012 - EX31_RS22755 0.49 -1.6
311,012 - EX31_RS22755 0.49 +0.9
311,012 - EX31_RS22755 0.49 +0.9
311,013 + EX31_RS22755 0.50 -0.5
311,029 + EX31_RS22755 0.51 +0.6
311,177 + EX31_RS22755 0.68 +0.9
311,178 - EX31_RS22755 0.68 +0.2
311,204 + EX31_RS22755 0.71 +1.6
311,205 - EX31_RS22755 0.71 +0.4

Or see this region's nucleotide sequence