Strain Fitness in Rahnella sp. WP5 around EX31_RS21280

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21275 and EX31_RS21280 overlap by 4 nucleotidesEX31_RS21280 and EX31_RS21285 overlap by 4 nucleotides EX31_RS21275: EX31_RS21275 - glycosyltransferase family 2 protein, at 897,076 to 898,791 _RS21275 EX31_RS21280: EX31_RS21280 - hydroxymyristoyl-ACP dehydratase, at 898,788 to 899,132 _RS21280 EX31_RS21285: EX31_RS21285 - acyl-CoA synthetase, at 899,129 to 900,478 _RS21285 Position (kb) 898 899 900Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 898.024 kb on - strand, within EX31_RS21275at 898.024 kb on - strand, within EX31_RS21275at 898.067 kb on + strand, within EX31_RS21275at 898.068 kb on - strand, within EX31_RS21275at 898.074 kb on + strand, within EX31_RS21275at 898.169 kb on + strand, within EX31_RS21275at 898.169 kb on + strand, within EX31_RS21275at 898.169 kb on + strand, within EX31_RS21275at 898.170 kb on - strand, within EX31_RS21275at 898.301 kb on + strand, within EX31_RS21275at 898.302 kb on - strand, within EX31_RS21275at 898.320 kb on + strand, within EX31_RS21275at 898.320 kb on + strand, within EX31_RS21275at 898.320 kb on + strand, within EX31_RS21275at 898.320 kb on + strand, within EX31_RS21275at 898.320 kb on + strand, within EX31_RS21275at 898.320 kb on + strand, within EX31_RS21275at 898.320 kb on + strand, within EX31_RS21275at 898.320 kb on + strand, within EX31_RS21275at 898.320 kb on + strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.321 kb on - strand, within EX31_RS21275at 898.374 kb on + strand, within EX31_RS21275at 898.374 kb on + strand, within EX31_RS21275at 898.374 kb on + strand, within EX31_RS21275at 898.374 kb on + strand, within EX31_RS21275at 898.374 kb on + strand, within EX31_RS21275at 898.374 kb on + strand, within EX31_RS21275at 898.374 kb on + strand, within EX31_RS21275at 898.374 kb on + strand, within EX31_RS21275at 898.375 kb on - strand, within EX31_RS21275at 898.375 kb on - strand, within EX31_RS21275at 898.375 kb on - strand, within EX31_RS21275at 898.375 kb on - strand, within EX31_RS21275at 898.376 kb on + strand, within EX31_RS21275at 898.376 kb on + strand, within EX31_RS21275at 898.376 kb on + strand, within EX31_RS21275at 898.376 kb on + strand, within EX31_RS21275at 898.376 kb on + strand, within EX31_RS21275at 898.376 kb on + strand, within EX31_RS21275at 898.376 kb on + strand, within EX31_RS21275at 898.376 kb on + strand, within EX31_RS21275at 898.376 kb on + strand, within EX31_RS21275at 898.377 kb on - strand, within EX31_RS21275at 898.377 kb on - strand, within EX31_RS21275at 898.385 kb on + strand, within EX31_RS21275at 898.385 kb on + strand, within EX31_RS21275at 898.386 kb on - strand, within EX31_RS21275at 898.386 kb on - strand, within EX31_RS21275at 898.416 kb on - strand, within EX31_RS21275at 898.516 kb on + strand, within EX31_RS21275at 898.516 kb on + strand, within EX31_RS21275at 898.517 kb on - strand, within EX31_RS21275at 898.517 kb on - strand, within EX31_RS21275at 898.588 kb on + strand, within EX31_RS21275at 898.588 kb on + strand, within EX31_RS21275at 898.588 kb on + strand, within EX31_RS21275at 898.589 kb on - strand, within EX31_RS21275at 898.589 kb on - strand, within EX31_RS21275at 898.717 kb on + strandat 898.745 kb on + strandat 898.746 kb on - strandat 898.746 kb on - strandat 898.755 kb on + strandat 898.797 kb on + strandat 898.797 kb on + strandat 898.797 kb on + strandat 898.797 kb on + strandat 898.797 kb on + strandat 898.797 kb on + strandat 898.797 kb on + strandat 898.798 kb on - strandat 898.798 kb on - strandat 898.798 kb on - strandat 898.798 kb on - strandat 898.798 kb on - strandat 898.798 kb on - strandat 898.841 kb on - strand, within EX31_RS21280at 899.052 kb on + strand, within EX31_RS21280at 899.132 kb on + strandat 899.133 kb on - strandat 899.133 kb on - strandat 899.295 kb on - strand, within EX31_RS21285at 899.295 kb on - strand, within EX31_RS21285at 899.295 kb on - strand, within EX31_RS21285at 899.315 kb on + strand, within EX31_RS21285at 899.315 kb on + strand, within EX31_RS21285at 899.315 kb on + strand, within EX31_RS21285at 899.316 kb on - strand, within EX31_RS21285at 899.316 kb on - strand, within EX31_RS21285at 899.316 kb on - strand, within EX31_RS21285at 899.316 kb on - strand, within EX31_RS21285at 899.336 kb on - strand, within EX31_RS21285at 899.337 kb on + strand, within EX31_RS21285at 899.337 kb on + strand, within EX31_RS21285at 899.338 kb on - strand, within EX31_RS21285at 899.338 kb on - strand, within EX31_RS21285at 899.501 kb on + strand, within EX31_RS21285at 899.501 kb on + strand, within EX31_RS21285at 899.502 kb on - strand, within EX31_RS21285at 899.512 kb on + strand, within EX31_RS21285at 899.566 kb on + strand, within EX31_RS21285at 899.567 kb on - strand, within EX31_RS21285at 899.567 kb on - strand, within EX31_RS21285at 899.567 kb on - strand, within EX31_RS21285at 899.567 kb on - strand, within EX31_RS21285at 899.650 kb on + strand, within EX31_RS21285at 899.673 kb on + strand, within EX31_RS21285at 899.709 kb on - strand, within EX31_RS21285at 899.709 kb on - strand, within EX31_RS21285at 899.728 kb on + strand, within EX31_RS21285at 899.728 kb on + strand, within EX31_RS21285at 899.729 kb on - strand, within EX31_RS21285at 899.729 kb on - strand, within EX31_RS21285at 899.729 kb on - strand, within EX31_RS21285at 899.729 kb on - strand, within EX31_RS21285at 899.732 kb on + strand, within EX31_RS21285at 899.831 kb on - strand, within EX31_RS21285at 899.915 kb on - strand, within EX31_RS21285at 899.915 kb on - strand, within EX31_RS21285at 899.915 kb on - strand, within EX31_RS21285at 899.934 kb on + strand, within EX31_RS21285at 899.934 kb on + strand, within EX31_RS21285at 899.934 kb on + strand, within EX31_RS21285at 899.934 kb on + strand, within EX31_RS21285at 899.934 kb on + strand, within EX31_RS21285at 899.934 kb on + strand, within EX31_RS21285at 899.935 kb on - strand, within EX31_RS21285at 899.935 kb on - strand, within EX31_RS21285at 899.935 kb on - strand, within EX31_RS21285at 899.935 kb on - strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.938 kb on + strand, within EX31_RS21285at 899.939 kb on - strand, within EX31_RS21285at 899.939 kb on - strand, within EX31_RS21285at 899.939 kb on - strand, within EX31_RS21285at 899.939 kb on - strand, within EX31_RS21285at 899.939 kb on - strand, within EX31_RS21285at 899.939 kb on - strand, within EX31_RS21285at 899.939 kb on - strand, within EX31_RS21285at 899.939 kb on - strand, within EX31_RS21285at 900.031 kb on + strand, within EX31_RS21285at 900.044 kb on + strand, within EX31_RS21285at 900.044 kb on + strand, within EX31_RS21285at 900.059 kb on - strand, within EX31_RS21285at 900.076 kb on + strand, within EX31_RS21285at 900.077 kb on - strand, within EX31_RS21285at 900.077 kb on - strand, within EX31_RS21285at 900.077 kb on - strand, within EX31_RS21285at 900.080 kb on + strand, within EX31_RS21285at 900.080 kb on + strand, within EX31_RS21285at 900.080 kb on + strand, within EX31_RS21285at 900.080 kb on + strand, within EX31_RS21285at 900.081 kb on - strand, within EX31_RS21285at 900.081 kb on - strand, within EX31_RS21285

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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898,024 - EX31_RS21275 0.55 +0.3
898,024 - EX31_RS21275 0.55 -0.6
898,067 + EX31_RS21275 0.58 +0.7
898,068 - EX31_RS21275 0.58 +0.6
898,074 + EX31_RS21275 0.58 -0.3
898,169 + EX31_RS21275 0.64 -0.3
898,169 + EX31_RS21275 0.64 -0.4
898,169 + EX31_RS21275 0.64 -0.7
898,170 - EX31_RS21275 0.64 +0.4
898,301 + EX31_RS21275 0.71 +0.7
898,302 - EX31_RS21275 0.71 +0.5
898,320 + EX31_RS21275 0.72 +0.5
898,320 + EX31_RS21275 0.72 +1.1
898,320 + EX31_RS21275 0.72 -0.4
898,320 + EX31_RS21275 0.72 +1.3
898,320 + EX31_RS21275 0.72 -1.3
898,320 + EX31_RS21275 0.72 +0.9
898,320 + EX31_RS21275 0.72 +0.5
898,320 + EX31_RS21275 0.72 -0.8
898,320 + EX31_RS21275 0.72 +0.4
898,321 - EX31_RS21275 0.73 +0.7
898,321 - EX31_RS21275 0.73 -0.6
898,321 - EX31_RS21275 0.73 +0.8
898,321 - EX31_RS21275 0.73 +1.6
898,321 - EX31_RS21275 0.73 -0.3
898,321 - EX31_RS21275 0.73 -0.2
898,321 - EX31_RS21275 0.73 -0.0
898,321 - EX31_RS21275 0.73 +0.3
898,321 - EX31_RS21275 0.73 -0.2
898,321 - EX31_RS21275 0.73 -1.0
898,321 - EX31_RS21275 0.73 +1.4
898,321 - EX31_RS21275 0.73 -0.7
898,321 - EX31_RS21275 0.73 +0.9
898,321 - EX31_RS21275 0.73 -1.1
898,321 - EX31_RS21275 0.73 +0.4
898,374 + EX31_RS21275 0.76 -0.2
898,374 + EX31_RS21275 0.76 -0.3
898,374 + EX31_RS21275 0.76 +0.2
898,374 + EX31_RS21275 0.76 -0.1
898,374 + EX31_RS21275 0.76 +0.2
898,374 + EX31_RS21275 0.76 +0.4
898,374 + EX31_RS21275 0.76 +0.7
898,374 + EX31_RS21275 0.76 +0.3
898,375 - EX31_RS21275 0.76 +0.2
898,375 - EX31_RS21275 0.76 -0.7
898,375 - EX31_RS21275 0.76 +1.3
898,375 - EX31_RS21275 0.76 -0.2
898,376 + EX31_RS21275 0.76 -1.7
898,376 + EX31_RS21275 0.76 -1.5
898,376 + EX31_RS21275 0.76 +0.2
898,376 + EX31_RS21275 0.76 +0.6
898,376 + EX31_RS21275 0.76 +0.2
898,376 + EX31_RS21275 0.76 +0.6
898,376 + EX31_RS21275 0.76 +0.5
898,376 + EX31_RS21275 0.76 +1.0
898,376 + EX31_RS21275 0.76 +0.6
898,377 - EX31_RS21275 0.76 -0.2
898,377 - EX31_RS21275 0.76 -0.4
898,385 + EX31_RS21275 0.76 -0.7
898,385 + EX31_RS21275 0.76 -1.1
898,386 - EX31_RS21275 0.76 -0.3
898,386 - EX31_RS21275 0.76 +1.1
898,416 - EX31_RS21275 0.78 -0.6
898,516 + EX31_RS21275 0.84 -0.2
898,516 + EX31_RS21275 0.84 +1.7
898,517 - EX31_RS21275 0.84 +1.3
898,517 - EX31_RS21275 0.84 +0.9
898,588 + EX31_RS21275 0.88 -0.0
898,588 + EX31_RS21275 0.88 +0.9
898,588 + EX31_RS21275 0.88 -1.1
898,589 - EX31_RS21275 0.88 +1.4
898,589 - EX31_RS21275 0.88 -0.7
898,717 + +0.1
898,745 + +1.4
898,746 - +0.3
898,746 - +0.4
898,755 + +0.2
898,797 + -1.4
898,797 + +0.6
898,797 + -0.4
898,797 + -0.4
898,797 + -2.8
898,797 + +0.7
898,797 + +0.0
898,798 - +0.6
898,798 - -0.9
898,798 - +0.5
898,798 - -0.1
898,798 - +0.9
898,798 - +0.5
898,841 - EX31_RS21280 0.15 -1.0
899,052 + EX31_RS21280 0.77 -1.1
899,132 + +0.4
899,133 - -0.3
899,133 - +0.1
899,295 - EX31_RS21285 0.12 -1.0
899,295 - EX31_RS21285 0.12 -0.2
899,295 - EX31_RS21285 0.12 -0.5
899,315 + EX31_RS21285 0.14 +0.2
899,315 + EX31_RS21285 0.14 +1.7
899,315 + EX31_RS21285 0.14 +0.7
899,316 - EX31_RS21285 0.14 +0.1
899,316 - EX31_RS21285 0.14 -0.0
899,316 - EX31_RS21285 0.14 -0.2
899,316 - EX31_RS21285 0.14 -0.3
899,336 - EX31_RS21285 0.15 -0.1
899,337 + EX31_RS21285 0.15 +0.4
899,337 + EX31_RS21285 0.15 +0.6
899,338 - EX31_RS21285 0.15 -0.1
899,338 - EX31_RS21285 0.15 -0.6
899,501 + EX31_RS21285 0.28 -0.3
899,501 + EX31_RS21285 0.28 -0.7
899,502 - EX31_RS21285 0.28 -0.8
899,512 + EX31_RS21285 0.28 +0.6
899,566 + EX31_RS21285 0.32 +0.0
899,567 - EX31_RS21285 0.32 -2.1
899,567 - EX31_RS21285 0.32 +0.1
899,567 - EX31_RS21285 0.32 +0.2
899,567 - EX31_RS21285 0.32 +1.3
899,650 + EX31_RS21285 0.39 +0.6
899,673 + EX31_RS21285 0.40 +0.8
899,709 - EX31_RS21285 0.43 +0.2
899,709 - EX31_RS21285 0.43 +1.0
899,728 + EX31_RS21285 0.44 +0.6
899,728 + EX31_RS21285 0.44 +0.5
899,729 - EX31_RS21285 0.44 -0.6
899,729 - EX31_RS21285 0.44 +1.1
899,729 - EX31_RS21285 0.44 -1.7
899,729 - EX31_RS21285 0.44 +0.9
899,732 + EX31_RS21285 0.45 -0.4
899,831 - EX31_RS21285 0.52 +1.4
899,915 - EX31_RS21285 0.58 -0.2
899,915 - EX31_RS21285 0.58 -0.0
899,915 - EX31_RS21285 0.58 +1.6
899,934 + EX31_RS21285 0.60 -2.0
899,934 + EX31_RS21285 0.60 +0.6
899,934 + EX31_RS21285 0.60 +0.1
899,934 + EX31_RS21285 0.60 -1.9
899,934 + EX31_RS21285 0.60 -0.2
899,934 + EX31_RS21285 0.60 +0.5
899,935 - EX31_RS21285 0.60 +0.9
899,935 - EX31_RS21285 0.60 +0.9
899,935 - EX31_RS21285 0.60 -0.1
899,935 - EX31_RS21285 0.60 -0.3
899,938 + EX31_RS21285 0.60 +0.3
899,938 + EX31_RS21285 0.60 -0.6
899,938 + EX31_RS21285 0.60 +0.1
899,938 + EX31_RS21285 0.60 -0.1
899,938 + EX31_RS21285 0.60 +0.3
899,938 + EX31_RS21285 0.60 +0.5
899,938 + EX31_RS21285 0.60 +0.9
899,938 + EX31_RS21285 0.60 +0.2
899,938 + EX31_RS21285 0.60 -0.4
899,938 + EX31_RS21285 0.60 +0.1
899,938 + EX31_RS21285 0.60 -0.1
899,938 + EX31_RS21285 0.60 +0.7
899,939 - EX31_RS21285 0.60 -0.7
899,939 - EX31_RS21285 0.60 -0.1
899,939 - EX31_RS21285 0.60 -2.9
899,939 - EX31_RS21285 0.60 +0.5
899,939 - EX31_RS21285 0.60 +0.5
899,939 - EX31_RS21285 0.60 +0.6
899,939 - EX31_RS21285 0.60 +1.2
899,939 - EX31_RS21285 0.60 +0.3
900,031 + EX31_RS21285 0.67 +0.1
900,044 + EX31_RS21285 0.68 +1.5
900,044 + EX31_RS21285 0.68 +0.3
900,059 - EX31_RS21285 0.69 +0.7
900,076 + EX31_RS21285 0.70 +0.3
900,077 - EX31_RS21285 0.70 +1.5
900,077 - EX31_RS21285 0.70 +1.6
900,077 - EX31_RS21285 0.70 +0.4
900,080 + EX31_RS21285 0.70 -0.3
900,080 + EX31_RS21285 0.70 -1.3
900,080 + EX31_RS21285 0.70 +2.1
900,080 + EX31_RS21285 0.70 +1.1
900,081 - EX31_RS21285 0.71 +0.0
900,081 - EX31_RS21285 0.71 +1.7

Or see this region's nucleotide sequence