Strain Fitness in Rahnella sp. WP5 around EX31_RS03250

Experiment: Ammonium chloride (N); RCH2 media; shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N); RCH2 media; shaking
140,317	-				+0.8
140,374	+				+0.5
140,390	+				+0.3
140,416	+				+1.3
140,502	-		EX31_RS03245	0.21	-0.3
140,527	+		EX31_RS03245	0.25	+0.5
140,527	+		EX31_RS03245	0.25	+0.3
140,527	+		EX31_RS03245	0.25	-0.3
140,527	+		EX31_RS03245	0.25	+0.3
140,528	-		EX31_RS03245	0.25	-0.1
140,528	-		EX31_RS03245	0.25	+0.5
140,528	-		EX31_RS03245	0.25	+0.7
140,531	+		EX31_RS03245	0.25	+0.6
140,531	+		EX31_RS03245	0.25	-0.7
140,532	-		EX31_RS03245	0.25	-0.5
140,532	-		EX31_RS03245	0.25	+0.3
140,587	+		EX31_RS03245	0.33	+0.7
140,587	+		EX31_RS03245	0.33	-0.1
140,587	+		EX31_RS03245	0.33	+0.5
140,588	-		EX31_RS03245	0.33	-0.8
140,637	+		EX31_RS03245	0.40	+1.0
140,638	-		EX31_RS03245	0.40	-0.7
140,646	+		EX31_RS03245	0.41	+0.1
140,659	+		EX31_RS03245	0.43	-1.2
140,677	-		EX31_RS03245	0.45	-0.6
140,677	-		EX31_RS03245	0.45	+0.2
140,677	-		EX31_RS03245	0.45	+0.5
140,682	-		EX31_RS03245	0.46	-0.4
140,702	-		EX31_RS03245	0.49	+0.5
140,703	+		EX31_RS03245	0.49	+0.5
140,703	+		EX31_RS03245	0.49	+1.2
140,703	+		EX31_RS03245	0.49	+0.0
140,704	-		EX31_RS03245	0.49	-0.3
140,704	-		EX31_RS03245	0.49	+1.2
140,704	-		EX31_RS03245	0.49	-0.0
140,716	-		EX31_RS03245	0.50	+0.8
140,741	+		EX31_RS03245	0.54	-1.1
140,741	+		EX31_RS03245	0.54	-0.1
140,742	-		EX31_RS03245	0.54	+1.2
140,742	-		EX31_RS03245	0.54	-0.0
140,742	-		EX31_RS03245	0.54	-0.6
140,742	-		EX31_RS03245	0.54	+0.4
140,742	-		EX31_RS03245	0.54	-0.1
140,743	+		EX31_RS03245	0.54	-0.0
140,743	+		EX31_RS03245	0.54	-0.0
140,744	-		EX31_RS03245	0.54	-0.1
140,827	-		EX31_RS03245	0.66	+0.1
140,827	-		EX31_RS03245	0.66	+0.4
140,835	+		EX31_RS03245	0.67	-0.4
140,835	+		EX31_RS03245	0.67	-0.6
140,896	+		EX31_RS03245	0.75	-0.2
140,896	+		EX31_RS03245	0.75	-0.0
140,897	-		EX31_RS03245	0.75	+0.3
140,923	+		EX31_RS03245	0.79	-0.4
140,923	+		EX31_RS03245	0.79	-0.3
140,923	+		EX31_RS03245	0.79	+1.0
140,923	+		EX31_RS03245	0.79	+0.0
140,923	+		EX31_RS03245	0.79	+1.8
140,924	-		EX31_RS03245	0.79	-0.0
140,924	-		EX31_RS03245	0.79	-2.5
140,924	-		EX31_RS03245	0.79	+1.3
140,936	+		EX31_RS03245	0.80	-0.4
140,938	+		EX31_RS03245	0.81	+0.8
140,938	+		EX31_RS03245	0.81	-0.1
140,954	+		EX31_RS03245	0.83	-0.7
140,954	+		EX31_RS03245	0.83	-0.6
140,954	+		EX31_RS03245	0.83	-0.1
140,954	+		EX31_RS03245	0.83	-1.0
140,954	+		EX31_RS03245	0.83	-0.6
140,954	+		EX31_RS03245	0.83	-0.2
140,954	+		EX31_RS03245	0.83	+0.3
140,954	+		EX31_RS03245	0.83	+0.5
140,954	+		EX31_RS03245	0.83	+0.5
140,954	+		EX31_RS03245	0.83	+0.3
140,954	+		EX31_RS03245	0.83	+0.9
140,954	+		EX31_RS03245	0.83	+0.8
140,954	+		EX31_RS03245	0.83	-1.9
140,954	+		EX31_RS03245	0.83	+0.3
140,954	+		EX31_RS03245	0.83	+0.8
140,954	+		EX31_RS03245	0.83	-0.9
140,955	-		EX31_RS03245	0.83	+1.8
140,955	-		EX31_RS03245	0.83	-0.3
140,955	-		EX31_RS03245	0.83	+0.1
140,955	-		EX31_RS03245	0.83	+1.4
140,955	-		EX31_RS03245	0.83	-0.4
140,955	-		EX31_RS03245	0.83	+0.4
140,955	-		EX31_RS03245	0.83	+0.9
140,955	-		EX31_RS03245	0.83	-0.2
140,955	-		EX31_RS03245	0.83	-0.3
140,955	-		EX31_RS03245	0.83	+0.4
140,987	+		EX31_RS03245	0.87	+0.7
140,987	+		EX31_RS03245	0.87	+0.9
140,987	+		EX31_RS03245	0.87	-0.2
140,988	-		EX31_RS03245	0.87	+0.1
140,988	-		EX31_RS03245	0.87	+0.5
141,013	+				-1.3
141,014	-				+0.5
141,048	+				-0.2
141,064	+				-0.5
141,064	+				+0.3
141,064	+				+0.3
141,064	+				+0.3
141,065	-				-1.9
141,065	-				+1.8
141,065	-				+1.7
141,085	+				+0.2
141,085	+				+0.1
141,085	+				+0.4
141,085	+				+0.5
141,086	-				-0.2
141,086	-				-0.5
141,086	-				-0.1
141,086	-				-0.4
141,086	-				-0.7
141,088	+				+0.1
141,088	+				+0.1
141,089	-				-0.4
141,162	+				+2.4
141,163	-				-0.6
141,188	+				+0.7
141,188	+				+2.1
141,188	+				-0.9
141,188	+				-0.6
141,192	+				+1.5
141,192	+				-0.1
141,192	+				-1.1
141,192	+				-0.2
141,192	+				-1.1
141,192	+				+0.1
141,192	+				-0.5
141,192	+				-0.2
141,192	+				-0.3
141,193	-				+1.1
141,193	-				-1.6
141,243	+				+0.2
141,243	+				+1.3
141,283	+				-0.7
141,283	+				+1.2
141,283	+				-0.5
141,283	+				+1.8
141,283	+				-0.0
141,283	+				+0.2
141,283	+				+0.0
141,283	+				+0.7
141,283	+				-0.9
141,283	+				-0.7
141,284	-				-0.5
141,284	-				-2.4
141,284	-				-1.2
141,293	+				+0.2
141,293	+				-0.6
141,293	+				-0.1
141,293	+				+0.2
141,293	+				-2.2
141,293	+				+0.2
141,293	+				+0.6
141,293	+				-0.1
141,293	+				-0.6
141,293	+				+0.8
141,293	+				+1.0
141,297	+				+0.3
141,297	+				-0.5
141,297	+				-0.1
141,297	+				-0.0
141,298	-				-2.8
141,400	+		EX31_RS03250	0.20	-1.2
141,400	+		EX31_RS03250	0.20	-0.3
141,400	+		EX31_RS03250	0.20	-2.6
141,400	+		EX31_RS03250	0.20	-3.8
141,400	+		EX31_RS03250	0.20	-3.6
141,400	+		EX31_RS03250	0.20	-1.8
141,400	+		EX31_RS03250	0.20	-2.9
141,400	+		EX31_RS03250	0.20	-1.8
141,400	+		EX31_RS03250	0.20	-0.7
141,400	+		EX31_RS03250	0.20	-1.9
141,400	+		EX31_RS03250	0.20	-2.0
141,401	-		EX31_RS03250	0.20	-2.3
141,401	-		EX31_RS03250	0.20	-1.3
141,401	-		EX31_RS03250	0.20	-0.9
141,401	-		EX31_RS03250	0.20	-3.3
141,402	+		EX31_RS03250	0.20	-4.6
141,402	+		EX31_RS03250	0.20	+0.5
141,402	+		EX31_RS03250	0.20	-1.9
141,480	+		EX31_RS03250	0.37	-4.1
141,588	+		EX31_RS03250	0.61	-1.8
141,588	+		EX31_RS03250	0.61	-2.7
141,588	+		EX31_RS03250	0.61	-3.8
141,588	+		EX31_RS03250	0.61	-2.1
141,588	+		EX31_RS03250	0.61	-4.5
141,588	+		EX31_RS03250	0.61	-2.5
141,588	+		EX31_RS03250	0.61	-4.0
141,588	+		EX31_RS03250	0.61	-2.1
141,699	+		EX31_RS03250	0.85	-0.8
141,723	+				-2.5
141,723	+				-2.9
141,763	+				-0.8
141,810	-				+1.3
141,810	-				+0.2
141,810	-				-0.2
141,827	+				-1.7
141,827	+				+0.9
141,828	-				+1.4
141,828	-				+0.5
141,828	-				+0.2
141,846	+				+1.4
141,846	+				-0.0
141,846	+				+0.4
141,846	+				-0.2
141,846	+				-0.3
141,846	+				-0.4
141,846	+				+1.4
141,846	+				+0.2
141,846	+				+0.8
141,846	+				-0.0
141,847	-				+0.9
141,847	-				+0.6
141,847	-				+2.4
141,847	-				+0.5
141,847	-				+0.4
141,847	-				+1.3
141,918	+		EX31_RS03255	0.10	-0.8
141,918	+		EX31_RS03255	0.10	-0.3
141,918	+		EX31_RS03255	0.10	+0.7
141,918	+		EX31_RS03255	0.10	+0.3
141,919	-		EX31_RS03255	0.10	+0.6
141,919	-		EX31_RS03255	0.10	-0.6
141,919	-		EX31_RS03255	0.10	+0.5
141,952	+		EX31_RS03255	0.14	-0.6
142,007	+		EX31_RS03255	0.20	-0.0
142,107	+		EX31_RS03255	0.32	+2.2
142,125	+		EX31_RS03255	0.34	+0.6
142,125	+		EX31_RS03255	0.34	-1.0
142,125	+		EX31_RS03255	0.34	-2.4
142,126	-		EX31_RS03255	0.34	-0.0
142,126	-		EX31_RS03255	0.34	+0.5
142,126	-		EX31_RS03255	0.34	+0.6
142,126	-		EX31_RS03255	0.34	-0.3
142,126	-		EX31_RS03255	0.34	-0.5
142,128	+		EX31_RS03255	0.34	-1.0
142,128	+		EX31_RS03255	0.34	-0.7
142,129	-		EX31_RS03255	0.34	+1.1
142,129	-		EX31_RS03255	0.34	-0.8
142,151	+		EX31_RS03255	0.37	+1.3
142,151	+		EX31_RS03255	0.37	+0.9
142,152	-		EX31_RS03255	0.37	-0.5
142,152	-		EX31_RS03255	0.37	-3.0
142,152	-		EX31_RS03255	0.37	-1.0
142,173	+		EX31_RS03255	0.39	-1.0
142,173	+		EX31_RS03255	0.39	+0.0
142,173	+		EX31_RS03255	0.39	+0.4
142,173	+		EX31_RS03255	0.39	+0.7
142,173	+		EX31_RS03255	0.39	-0.3
142,173	+		EX31_RS03255	0.39	-0.7
142,173	+		EX31_RS03255	0.39	-0.2
142,173	+		EX31_RS03255	0.39	-0.5
142,173	+		EX31_RS03255	0.39	+0.1
142,173	+		EX31_RS03255	0.39	+0.5
142,174	-		EX31_RS03255	0.39	-0.5
142,174	-		EX31_RS03255	0.39	-0.9
142,174	-		EX31_RS03255	0.39	-0.3
142,174	-		EX31_RS03255	0.39	-0.0
142,222	+		EX31_RS03255	0.45	-0.2
142,222	+		EX31_RS03255	0.45	+1.8
142,222	+		EX31_RS03255	0.45	-0.3
142,222	+		EX31_RS03255	0.45	+0.1
142,222	+		EX31_RS03255	0.45	+0.1
142,222	+		EX31_RS03255	0.45	+0.5
142,222	+		EX31_RS03255	0.45	+0.5
142,223	-		EX31_RS03255	0.45	+1.3
142,223	-		EX31_RS03255	0.45	-0.2
142,223	-		EX31_RS03255	0.45	+0.4
142,223	-		EX31_RS03255	0.45	-0.4
142,223	-		EX31_RS03255	0.45	+0.7
142,223	-		EX31_RS03255	0.45	-0.3
142,223	-		EX31_RS03255	0.45	-0.7
142,223	-		EX31_RS03255	0.45	-0.5
142,223	-		EX31_RS03255	0.45	+0.6
142,279	+		EX31_RS03255	0.51	-0.0
142,279	+		EX31_RS03255	0.51	-0.7
142,280	-		EX31_RS03255	0.52	+0.4
142,313	+		EX31_RS03255	0.55	-2.3
142,313	+		EX31_RS03255	0.55	+0.3
142,313	+		EX31_RS03255	0.55	-0.2
142,314	-		EX31_RS03255	0.55	-0.1
142,314	-		EX31_RS03255	0.55	-0.3
142,316	+		EX31_RS03255	0.56	-1.1
142,344	+		EX31_RS03255	0.59	+1.1
142,344	+		EX31_RS03255	0.59	+1.1
142,344	+		EX31_RS03255	0.59	-0.0
142,344	+		EX31_RS03255	0.59	+0.7
142,344	+		EX31_RS03255	0.59	-1.1
142,344	+		EX31_RS03255	0.59	-0.9
142,344	+		EX31_RS03255	0.59	+0.7
142,344	+		EX31_RS03255	0.59	+1.2
142,344	+		EX31_RS03255	0.59	+2.1
142,344	+		EX31_RS03255	0.59	-0.6
142,345	-		EX31_RS03255	0.59	-1.0
142,347	-		EX31_RS03255	0.59	-1.5
142,347	-		EX31_RS03255	0.59	+0.3
142,357	+		EX31_RS03255	0.60	+0.2
142,358	-		EX31_RS03255	0.61	+0.2
142,358	-		EX31_RS03255	0.61	+0.7
142,358	-		EX31_RS03255	0.61	+0.4
142,444	-		EX31_RS03255	0.70	+0.7
142,568	+		EX31_RS03255	0.84	+1.4
142,568	+		EX31_RS03255	0.84	-0.2
142,568	+		EX31_RS03255	0.84	+0.7
142,569	-		EX31_RS03255	0.85	+0.2
142,575	-		EX31_RS03255	0.85	+0.3
142,623	+				-0.1
142,623	+				-0.1
142,623	+				+0.1
142,624	-				+1.3
142,624	-				+0.4
142,625	+				+0.9
142,625	+				-0.3
142,625	+				+0.8
142,625	+				+0.5
142,626	-				+0.5
142,626	-				+0.1
142,636	+				+1.3
142,636	+				+1.7
142,636	+				+0.3
142,637	-				-1.4
142,639	+				-0.7
142,639	+				-1.5
142,640	-				-0.9
142,642	+				+0.3
142,642	+				-1.6
142,642	+				-0.4
142,643	-				+1.8
142,744	+				-0.8
142,744	+				-0.0
142,744	+				+0.3
142,744	+				+0.3
142,744	+				+1.7
142,744	+				+0.1
142,744	+				+1.1
142,744	+				-0.2
142,745	-				-2.0
142,745	-				-2.1
142,745	-				+0.5
142,745	-				-0.3
142,745	-				-0.5