Strain Fitness in Rahnella sp. WP5 around EX31_RS01225

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01220 and EX31_RS01225 are separated by 69 nucleotidesEX31_RS01225 and EX31_RS01230 are separated by 51 nucleotides EX31_RS01220: EX31_RS01220 - peptide MFS transporter, at 271,213 to 272,766 _RS01220 EX31_RS01225: EX31_RS01225 - glutaredoxin-dependent arsenate reductase, at 272,836 to 273,267 _RS01225 EX31_RS01230: EX31_RS01230 - arsenic transporter, at 273,319 to 274,608 _RS01230 Position (kb) 272 273 274Strain fitness (log2 ratio) -2 -1 0 1 2at 271.843 kb on + strand, within EX31_RS01220at 271.890 kb on + strand, within EX31_RS01220at 272.011 kb on + strand, within EX31_RS01220at 272.012 kb on - strand, within EX31_RS01220at 272.043 kb on + strand, within EX31_RS01220at 272.044 kb on - strand, within EX31_RS01220at 272.047 kb on + strand, within EX31_RS01220at 272.047 kb on + strand, within EX31_RS01220at 272.185 kb on + strand, within EX31_RS01220at 272.186 kb on - strand, within EX31_RS01220at 272.253 kb on + strand, within EX31_RS01220at 272.423 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.607 kb on - strand, within EX31_RS01220at 272.607 kb on - strand, within EX31_RS01220at 272.625 kb on + strandat 272.626 kb on - strandat 272.733 kb on + strandat 272.734 kb on - strandat 272.848 kb on + strandat 272.851 kb on - strandat 272.851 kb on - strandat 272.851 kb on - strandat 272.851 kb on - strandat 272.933 kb on - strand, within EX31_RS01225at 272.933 kb on - strand, within EX31_RS01225at 272.933 kb on - strand, within EX31_RS01225at 272.933 kb on - strand, within EX31_RS01225at 272.953 kb on + strand, within EX31_RS01225at 273.071 kb on + strand, within EX31_RS01225at 273.259 kb on - strandat 273.291 kb on + strandat 273.292 kb on - strandat 273.321 kb on - strandat 273.404 kb on + strandat 273.404 kb on + strandat 273.408 kb on - strandat 273.408 kb on - strandat 273.426 kb on + strandat 273.426 kb on + strandat 273.426 kb on + strandat 273.455 kb on - strand, within EX31_RS01230at 273.521 kb on + strand, within EX31_RS01230at 273.522 kb on - strand, within EX31_RS01230at 273.522 kb on - strand, within EX31_RS01230at 273.568 kb on - strand, within EX31_RS01230at 273.598 kb on - strand, within EX31_RS01230at 273.649 kb on - strand, within EX31_RS01230at 273.658 kb on + strand, within EX31_RS01230at 273.658 kb on + strand, within EX31_RS01230at 273.729 kb on - strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.801 kb on + strand, within EX31_RS01230at 273.802 kb on - strand, within EX31_RS01230at 273.828 kb on + strand, within EX31_RS01230at 273.828 kb on + strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.830 kb on + strand, within EX31_RS01230at 273.831 kb on - strand, within EX31_RS01230at 273.831 kb on - strand, within EX31_RS01230at 273.988 kb on - strand, within EX31_RS01230at 273.992 kb on + strand, within EX31_RS01230at 273.992 kb on + strand, within EX31_RS01230at 274.125 kb on + strand, within EX31_RS01230at 274.125 kb on + strand, within EX31_RS01230at 274.199 kb on - strand, within EX31_RS01230

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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271,843 + EX31_RS01220 0.41 -0.0
271,890 + EX31_RS01220 0.44 +0.8
272,011 + EX31_RS01220 0.51 -0.8
272,012 - EX31_RS01220 0.51 +0.8
272,043 + EX31_RS01220 0.53 +0.3
272,044 - EX31_RS01220 0.53 +2.1
272,047 + EX31_RS01220 0.54 -1.7
272,047 + EX31_RS01220 0.54 +0.2
272,185 + EX31_RS01220 0.63 +0.7
272,186 - EX31_RS01220 0.63 +0.4
272,253 + EX31_RS01220 0.67 -0.4
272,423 + EX31_RS01220 0.78 -0.6
272,606 + EX31_RS01220 0.90 +0.2
272,606 + EX31_RS01220 0.90 +1.3
272,606 + EX31_RS01220 0.90 +1.0
272,606 + EX31_RS01220 0.90 +1.1
272,607 - EX31_RS01220 0.90 -1.4
272,607 - EX31_RS01220 0.90 -1.2
272,625 + +1.0
272,626 - -0.1
272,733 + -1.9
272,734 - +0.9
272,848 + -0.9
272,851 - +1.8
272,851 - -0.8
272,851 - +0.8
272,851 - +2.1
272,933 - EX31_RS01225 0.22 -1.8
272,933 - EX31_RS01225 0.22 -0.4
272,933 - EX31_RS01225 0.22 -0.9
272,933 - EX31_RS01225 0.22 -0.3
272,953 + EX31_RS01225 0.27 -1.5
273,071 + EX31_RS01225 0.54 +1.1
273,259 - -1.8
273,291 + +0.6
273,292 - +0.8
273,321 - -0.1
273,404 + +0.5
273,404 + +0.1
273,408 - +0.7
273,408 - -0.2
273,426 + -1.5
273,426 + +0.8
273,426 + +0.7
273,455 - EX31_RS01230 0.11 -0.1
273,521 + EX31_RS01230 0.16 -1.5
273,522 - EX31_RS01230 0.16 +0.8
273,522 - EX31_RS01230 0.16 +0.6
273,568 - EX31_RS01230 0.19 +1.8
273,598 - EX31_RS01230 0.22 +0.9
273,649 - EX31_RS01230 0.26 -0.8
273,658 + EX31_RS01230 0.26 +0.5
273,658 + EX31_RS01230 0.26 +2.1
273,729 - EX31_RS01230 0.32 +1.1
273,740 + EX31_RS01230 0.33 +1.1
273,740 + EX31_RS01230 0.33 +0.6
273,740 + EX31_RS01230 0.33 +1.3
273,740 + EX31_RS01230 0.33 -0.2
273,741 - EX31_RS01230 0.33 -0.5
273,741 - EX31_RS01230 0.33 -0.6
273,741 - EX31_RS01230 0.33 +1.1
273,741 - EX31_RS01230 0.33 +0.5
273,801 + EX31_RS01230 0.37 +0.2
273,802 - EX31_RS01230 0.37 +0.9
273,828 + EX31_RS01230 0.39 -0.7
273,828 + EX31_RS01230 0.39 +0.1
273,829 - EX31_RS01230 0.40 -0.7
273,829 - EX31_RS01230 0.40 -2.3
273,829 - EX31_RS01230 0.40 +0.4
273,829 - EX31_RS01230 0.40 +0.3
273,830 + EX31_RS01230 0.40 -0.2
273,831 - EX31_RS01230 0.40 -0.2
273,831 - EX31_RS01230 0.40 +1.1
273,988 - EX31_RS01230 0.52 +0.5
273,992 + EX31_RS01230 0.52 +0.6
273,992 + EX31_RS01230 0.52 +0.1
274,125 + EX31_RS01230 0.62 +1.6
274,125 + EX31_RS01230 0.62 +1.1
274,199 - EX31_RS01230 0.68 +0.9

Or see this region's nucleotide sequence