Strain Fitness in Rahnella sp. WP5 around EX31_RS01060

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01055 and EX31_RS01060 are separated by 116 nucleotidesEX31_RS01060 and EX31_RS01065 are separated by 78 nucleotidesEX31_RS01065 and EX31_RS01070 are separated by 14 nucleotides EX31_RS01055: EX31_RS01055 - MFS transporter, at 231,371 to 232,543 _RS01055 EX31_RS01060: EX31_RS01060 - HAD family hydrolase, at 232,660 to 233,472 _RS01060 EX31_RS01065: EX31_RS01065 - glycine zipper family protein, at 233,551 to 234,090 _RS01065 EX31_RS01070: EX31_RS01070 - hypothetical protein, at 234,105 to 234,452 _RS01070 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 231.712 kb on + strand, within EX31_RS01055at 231.712 kb on + strand, within EX31_RS01055at 231.712 kb on + strand, within EX31_RS01055at 231.951 kb on + strand, within EX31_RS01055at 232.051 kb on + strand, within EX31_RS01055at 232.051 kb on + strand, within EX31_RS01055at 232.052 kb on - strand, within EX31_RS01055at 232.086 kb on + strand, within EX31_RS01055at 232.086 kb on + strand, within EX31_RS01055at 232.332 kb on + strand, within EX31_RS01055at 232.332 kb on + strand, within EX31_RS01055at 232.381 kb on + strand, within EX31_RS01055at 232.381 kb on + strand, within EX31_RS01055at 232.381 kb on + strand, within EX31_RS01055at 232.381 kb on + strand, within EX31_RS01055at 232.381 kb on + strand, within EX31_RS01055at 232.382 kb on - strand, within EX31_RS01055at 232.382 kb on - strand, within EX31_RS01055at 232.470 kb on + strandat 232.470 kb on + strandat 232.470 kb on + strandat 232.471 kb on - strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.472 kb on + strandat 232.473 kb on - strandat 232.473 kb on - strandat 232.492 kb on - strandat 232.527 kb on - strandat 232.538 kb on + strandat 232.620 kb on + strandat 232.668 kb on - strandat 232.682 kb on + strandat 232.725 kb on + strandat 232.747 kb on + strand, within EX31_RS01060at 232.794 kb on + strand, within EX31_RS01060at 232.801 kb on + strand, within EX31_RS01060at 232.812 kb on + strand, within EX31_RS01060at 232.813 kb on - strand, within EX31_RS01060at 232.849 kb on + strand, within EX31_RS01060at 232.871 kb on - strand, within EX31_RS01060at 232.934 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.996 kb on + strand, within EX31_RS01060at 232.997 kb on - strand, within EX31_RS01060at 232.997 kb on - strand, within EX31_RS01060at 233.000 kb on + strand, within EX31_RS01060at 233.000 kb on + strand, within EX31_RS01060at 233.000 kb on + strand, within EX31_RS01060at 233.000 kb on + strand, within EX31_RS01060at 233.044 kb on + strand, within EX31_RS01060at 233.047 kb on + strand, within EX31_RS01060at 233.047 kb on + strand, within EX31_RS01060at 233.048 kb on - strand, within EX31_RS01060at 233.074 kb on + strand, within EX31_RS01060at 233.112 kb on + strand, within EX31_RS01060at 233.112 kb on + strand, within EX31_RS01060at 233.112 kb on + strand, within EX31_RS01060at 233.113 kb on - strand, within EX31_RS01060at 233.116 kb on + strand, within EX31_RS01060at 233.116 kb on + strand, within EX31_RS01060at 233.143 kb on - strand, within EX31_RS01060at 233.172 kb on + strand, within EX31_RS01060at 233.173 kb on - strand, within EX31_RS01060at 233.173 kb on - strand, within EX31_RS01060at 233.267 kb on - strand, within EX31_RS01060at 233.332 kb on + strand, within EX31_RS01060at 233.333 kb on - strand, within EX31_RS01060at 233.552 kb on + strandat 233.557 kb on + strandat 233.557 kb on + strandat 233.562 kb on - strandat 233.562 kb on - strandat 233.600 kb on + strandat 233.600 kb on + strandat 233.601 kb on - strandat 233.603 kb on + strandat 233.604 kb on - strandat 233.604 kb on - strandat 233.645 kb on + strand, within EX31_RS01065at 233.645 kb on + strand, within EX31_RS01065at 233.652 kb on - strand, within EX31_RS01065at 233.652 kb on - strand, within EX31_RS01065at 233.652 kb on - strand, within EX31_RS01065at 233.674 kb on - strand, within EX31_RS01065at 233.687 kb on + strand, within EX31_RS01065at 233.715 kb on - strand, within EX31_RS01065at 233.731 kb on - strand, within EX31_RS01065at 233.861 kb on - strand, within EX31_RS01065at 233.933 kb on + strand, within EX31_RS01065at 233.933 kb on + strand, within EX31_RS01065at 233.934 kb on - strand, within EX31_RS01065at 233.934 kb on - strand, within EX31_RS01065at 234.126 kb on + strandat 234.126 kb on + strandat 234.200 kb on - strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.248 kb on + strand, within EX31_RS01070at 234.248 kb on + strand, within EX31_RS01070at 234.248 kb on + strand, within EX31_RS01070at 234.249 kb on - strand, within EX31_RS01070at 234.254 kb on - strand, within EX31_RS01070at 234.275 kb on - strand, within EX31_RS01070at 234.277 kb on + strand, within EX31_RS01070at 234.277 kb on + strand, within EX31_RS01070at 234.278 kb on - strand, within EX31_RS01070at 234.346 kb on + strand, within EX31_RS01070at 234.346 kb on + strand, within EX31_RS01070at 234.347 kb on - strand, within EX31_RS01070at 234.349 kb on + strand, within EX31_RS01070at 234.361 kb on + strand, within EX31_RS01070at 234.362 kb on - strand, within EX31_RS01070at 234.379 kb on + strand, within EX31_RS01070at 234.380 kb on - strand, within EX31_RS01070at 234.452 kb on + strandat 234.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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231,712 + EX31_RS01055 0.29 +1.8
231,712 + EX31_RS01055 0.29 -1.3
231,712 + EX31_RS01055 0.29 -1.6
231,951 + EX31_RS01055 0.49 +0.8
232,051 + EX31_RS01055 0.58 +0.5
232,051 + EX31_RS01055 0.58 +0.2
232,052 - EX31_RS01055 0.58 -0.6
232,086 + EX31_RS01055 0.61 +0.3
232,086 + EX31_RS01055 0.61 +0.3
232,332 + EX31_RS01055 0.82 -0.9
232,332 + EX31_RS01055 0.82 +1.2
232,381 + EX31_RS01055 0.86 +1.1
232,381 + EX31_RS01055 0.86 +0.8
232,381 + EX31_RS01055 0.86 +0.2
232,381 + EX31_RS01055 0.86 +1.5
232,381 + EX31_RS01055 0.86 +0.8
232,382 - EX31_RS01055 0.86 +0.5
232,382 - EX31_RS01055 0.86 +1.5
232,470 + -0.1
232,470 + -1.8
232,470 + +1.4
232,471 - +1.4
232,472 + +0.2
232,472 + -0.3
232,472 + +0.6
232,472 + +1.0
232,472 + -0.4
232,472 + -1.5
232,472 + -1.1
232,472 + +1.5
232,472 + +1.0
232,472 + +0.5
232,473 - -1.2
232,473 - -0.4
232,492 - -0.6
232,527 - -0.2
232,538 + -0.7
232,620 + -2.5
232,668 - -0.8
232,682 + +0.9
232,725 + -0.8
232,747 + EX31_RS01060 0.11 -2.6
232,794 + EX31_RS01060 0.16 +0.6
232,801 + EX31_RS01060 0.17 +0.2
232,812 + EX31_RS01060 0.19 +0.4
232,813 - EX31_RS01060 0.19 -2.4
232,849 + EX31_RS01060 0.23 +0.8
232,871 - EX31_RS01060 0.26 +0.2
232,934 + EX31_RS01060 0.34 -0.5
232,996 + EX31_RS01060 0.41 +0.3
232,996 + EX31_RS01060 0.41 +0.8
232,996 + EX31_RS01060 0.41 +1.0
232,996 + EX31_RS01060 0.41 -1.0
232,996 + EX31_RS01060 0.41 -1.4
232,996 + EX31_RS01060 0.41 -1.1
232,997 - EX31_RS01060 0.41 -1.8
232,997 - EX31_RS01060 0.41 +0.2
233,000 + EX31_RS01060 0.42 +0.1
233,000 + EX31_RS01060 0.42 +0.0
233,000 + EX31_RS01060 0.42 -0.2
233,000 + EX31_RS01060 0.42 -0.2
233,044 + EX31_RS01060 0.47 -0.4
233,047 + EX31_RS01060 0.48 -1.4
233,047 + EX31_RS01060 0.48 -1.1
233,048 - EX31_RS01060 0.48 -0.4
233,074 + EX31_RS01060 0.51 -0.1
233,112 + EX31_RS01060 0.56 -1.9
233,112 + EX31_RS01060 0.56 +0.1
233,112 + EX31_RS01060 0.56 -0.9
233,113 - EX31_RS01060 0.56 -0.3
233,116 + EX31_RS01060 0.56 +1.2
233,116 + EX31_RS01060 0.56 -0.8
233,143 - EX31_RS01060 0.59 +1.0
233,172 + EX31_RS01060 0.63 -0.7
233,173 - EX31_RS01060 0.63 -0.2
233,173 - EX31_RS01060 0.63 -1.0
233,267 - EX31_RS01060 0.75 -1.4
233,332 + EX31_RS01060 0.83 +0.0
233,333 - EX31_RS01060 0.83 +1.8
233,552 + -1.2
233,557 + -0.5
233,557 + +1.2
233,562 - +0.2
233,562 - -0.7
233,600 + +0.0
233,600 + +0.2
233,601 - +1.3
233,603 + +1.4
233,604 - +0.8
233,604 - +1.8
233,645 + EX31_RS01065 0.17 -2.5
233,645 + EX31_RS01065 0.17 -0.3
233,652 - EX31_RS01065 0.19 +0.1
233,652 - EX31_RS01065 0.19 +0.6
233,652 - EX31_RS01065 0.19 +0.2
233,674 - EX31_RS01065 0.23 +0.0
233,687 + EX31_RS01065 0.25 -0.1
233,715 - EX31_RS01065 0.30 -2.5
233,731 - EX31_RS01065 0.33 -0.3
233,861 - EX31_RS01065 0.57 +0.5
233,933 + EX31_RS01065 0.71 -1.3
233,933 + EX31_RS01065 0.71 -0.2
233,934 - EX31_RS01065 0.71 -0.5
233,934 - EX31_RS01065 0.71 -1.6
234,126 + -1.0
234,126 + -0.2
234,200 - EX31_RS01070 0.27 -1.0
234,226 + EX31_RS01070 0.35 +0.4
234,226 + EX31_RS01070 0.35 +1.3
234,226 + EX31_RS01070 0.35 -1.4
234,226 + EX31_RS01070 0.35 +0.5
234,226 + EX31_RS01070 0.35 +0.5
234,226 + EX31_RS01070 0.35 -0.8
234,226 + EX31_RS01070 0.35 -0.4
234,227 - EX31_RS01070 0.35 +0.1
234,227 - EX31_RS01070 0.35 +1.8
234,227 - EX31_RS01070 0.35 -1.1
234,227 - EX31_RS01070 0.35 -0.2
234,227 - EX31_RS01070 0.35 -1.4
234,227 - EX31_RS01070 0.35 +0.6
234,227 - EX31_RS01070 0.35 +0.5
234,227 - EX31_RS01070 0.35 +0.1
234,227 - EX31_RS01070 0.35 +1.3
234,227 - EX31_RS01070 0.35 +1.0
234,227 - EX31_RS01070 0.35 +0.9
234,248 + EX31_RS01070 0.41 -0.3
234,248 + EX31_RS01070 0.41 +0.2
234,248 + EX31_RS01070 0.41 +0.7
234,249 - EX31_RS01070 0.41 -1.4
234,254 - EX31_RS01070 0.43 -2.2
234,275 - EX31_RS01070 0.49 +0.3
234,277 + EX31_RS01070 0.49 +0.6
234,277 + EX31_RS01070 0.49 -1.7
234,278 - EX31_RS01070 0.50 -1.3
234,346 + EX31_RS01070 0.69 -0.0
234,346 + EX31_RS01070 0.69 +0.6
234,347 - EX31_RS01070 0.70 -0.7
234,349 + EX31_RS01070 0.70 +0.2
234,361 + EX31_RS01070 0.74 -1.9
234,362 - EX31_RS01070 0.74 -0.4
234,379 + EX31_RS01070 0.79 -0.2
234,380 - EX31_RS01070 0.79 +1.1
234,452 + +0.0
234,453 - -0.6

Or see this region's nucleotide sequence