Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24745

Experiment: R2A with Polymyxin B sulfate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS24740 and CA265_RS24745 are separated by 199 nucleotidesCA265_RS24745 and CA265_RS24750 are separated by 761 nucleotides CA265_RS24740: CA265_RS24740 - 50S ribosomal protein L25/general stress protein Ctc, at 6,042,047 to 6,042,631 _RS24740 CA265_RS24745: CA265_RS24745 - aminoacyl-tRNA hydrolase, at 6,042,831 to 6,043,391 _RS24745 CA265_RS24750: CA265_RS24750 - hypothetical protein, at 6,044,153 to 6,044,818 _RS24750 Position (kb) 6042 6043 6044Strain fitness (log2 ratio) -2 -1 0 1at 6041.852 kb on + strandat 6041.874 kb on + strandat 6041.874 kb on + strandat 6041.894 kb on + strandat 6041.944 kb on + strandat 6041.950 kb on + strandat 6042.697 kb on + strandat 6042.768 kb on - strandat 6042.777 kb on + strandat 6042.779 kb on + strandat 6042.780 kb on - strandat 6043.397 kb on - strandat 6043.404 kb on + strandat 6043.447 kb on - strandat 6043.490 kb on - strandat 6043.491 kb on + strandat 6043.491 kb on + strandat 6043.492 kb on - strandat 6043.492 kb on - strandat 6043.509 kb on - strandat 6043.509 kb on - strandat 6043.519 kb on - strandat 6043.657 kb on - strandat 6043.657 kb on - strandat 6043.703 kb on + strandat 6043.704 kb on - strandat 6043.737 kb on - strandat 6043.740 kb on - strandat 6043.759 kb on - strandat 6043.812 kb on - strandat 6043.812 kb on - strandat 6043.918 kb on - strandat 6043.922 kb on + strandat 6043.961 kb on + strandat 6043.996 kb on + strandat 6043.996 kb on + strandat 6044.001 kb on + strandat 6044.002 kb on - strandat 6044.049 kb on + strandat 6044.049 kb on + strandat 6044.137 kb on - strandat 6044.155 kb on - strandat 6044.159 kb on - strandat 6044.239 kb on + strand, within CA265_RS24750at 6044.357 kb on - strand, within CA265_RS24750at 6044.370 kb on + strand, within CA265_RS24750

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.016 mg/ml
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6,041,852 + -2.0
6,041,874 + +0.4
6,041,874 + -0.5
6,041,894 + +0.9
6,041,944 + +0.7
6,041,950 + -0.4
6,042,697 + -0.6
6,042,768 - -1.0
6,042,777 + -1.5
6,042,779 + -0.4
6,042,780 - +0.4
6,043,397 - +0.8
6,043,404 + +0.2
6,043,447 - +0.2
6,043,490 - -0.6
6,043,491 + -0.2
6,043,491 + +0.4
6,043,492 - +1.0
6,043,492 - -1.0
6,043,509 - +0.6
6,043,509 - +0.0
6,043,519 - -0.7
6,043,657 - -0.0
6,043,657 - +0.7
6,043,703 + -1.8
6,043,704 - -0.4
6,043,737 - -0.6
6,043,740 - +0.6
6,043,759 - -0.1
6,043,812 - +0.7
6,043,812 - +0.1
6,043,918 - -0.7
6,043,922 + +0.4
6,043,961 + +0.4
6,043,996 + +0.6
6,043,996 + +0.1
6,044,001 + +1.0
6,044,002 - -1.3
6,044,049 + +0.7
6,044,049 + +0.1
6,044,137 - +0.4
6,044,155 - -0.3
6,044,159 - +0.8
6,044,239 + CA265_RS24750 0.13 -1.2
6,044,357 - CA265_RS24750 0.31 -1.4
6,044,370 + CA265_RS24750 0.33 -0.8

Or see this region's nucleotide sequence