Experiment: R2A with Polymyxin B sulfate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22215 and CA265_RS22220 are separated by 144 nucleotides CA265_RS22220 and CA265_RS22225 are separated by 105 nucleotides CA265_RS22225 and CA265_RS22230 are separated by 1 nucleotides CA265_RS22230 and CA265_RS22235 are separated by 12 nucleotides
CA265_RS22215: CA265_RS22215 - type VI secretion system needle protein Hcp, at 5,459,673 to 5,460,068
_RS22215
CA265_RS22220: CA265_RS22220 - hypothetical protein, at 5,460,213 to 5,460,608
_RS22220
CA265_RS22225: CA265_RS22225 - hypothetical protein, at 5,460,714 to 5,461,265
_RS22225
CA265_RS22230: CA265_RS22230 - hypothetical protein, at 5,461,267 to 5,461,854
_RS22230
CA265_RS22235: CA265_RS22235 - type IV secretion protein Rhs, at 5,461,867 to 5,463,666
_RS22235
Position (kb) 5460
5461
5462 Strain fitness (log2 ratio) -2
-1
0
1 at 5460.047 kb on + strand at 5460.084 kb on - strand at 5460.099 kb on - strand at 5460.123 kb on - strand at 5460.123 kb on - strand at 5460.124 kb on + strand at 5460.125 kb on - strand at 5460.125 kb on - strand at 5460.133 kb on + strand at 5460.134 kb on - strand at 5460.134 kb on - strand at 5460.138 kb on + strand at 5460.204 kb on - strand at 5460.210 kb on - strand at 5460.463 kb on + strand, within CA265_RS22220 at 5460.481 kb on - strand, within CA265_RS22220 at 5460.631 kb on - strand at 5460.638 kb on + strand at 5460.639 kb on - strand at 5460.694 kb on - strand at 5460.694 kb on - strand at 5460.724 kb on + strand at 5460.777 kb on + strand, within CA265_RS22225 at 5460.777 kb on + strand, within CA265_RS22225 at 5460.777 kb on + strand, within CA265_RS22225 at 5460.777 kb on + strand, within CA265_RS22225 at 5460.778 kb on - strand, within CA265_RS22225 at 5460.779 kb on + strand, within CA265_RS22225 at 5460.788 kb on - strand, within CA265_RS22225 at 5460.857 kb on + strand, within CA265_RS22225 at 5460.897 kb on - strand, within CA265_RS22225 at 5460.986 kb on + strand, within CA265_RS22225 at 5461.086 kb on + strand, within CA265_RS22225 at 5461.087 kb on - strand, within CA265_RS22225 at 5461.224 kb on - strand at 5461.224 kb on - strand at 5461.224 kb on - strand at 5461.232 kb on + strand at 5461.233 kb on - strand at 5461.323 kb on + strand at 5461.369 kb on + strand, within CA265_RS22230 at 5461.374 kb on + strand, within CA265_RS22230 at 5461.375 kb on - strand, within CA265_RS22230 at 5461.375 kb on - strand, within CA265_RS22230 at 5461.380 kb on + strand, within CA265_RS22230 at 5461.425 kb on + strand, within CA265_RS22230 at 5461.426 kb on - strand, within CA265_RS22230 at 5461.426 kb on - strand, within CA265_RS22230 at 5461.428 kb on + strand, within CA265_RS22230 at 5461.429 kb on - strand, within CA265_RS22230 at 5461.540 kb on - strand, within CA265_RS22230 at 5461.555 kb on - strand, within CA265_RS22230 at 5461.620 kb on + strand, within CA265_RS22230 at 5461.620 kb on + strand, within CA265_RS22230 at 5461.738 kb on - strand, within CA265_RS22230 at 5461.738 kb on - strand, within CA265_RS22230 at 5461.788 kb on + strand, within CA265_RS22230 at 5461.789 kb on - strand, within CA265_RS22230 at 5461.789 kb on - strand, within CA265_RS22230 at 5461.894 kb on - strand at 5461.894 kb on - strand at 5461.898 kb on + strand at 5461.899 kb on - strand at 5461.933 kb on - strand at 5461.933 kb on - strand at 5461.937 kb on + strand at 5461.951 kb on - strand at 5461.964 kb on - strand at 5461.981 kb on - strand at 5462.164 kb on + strand, within CA265_RS22235
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.016 mg/ml remove 5,460,047 + -0.9 5,460,084 - +0.3 5,460,099 - +0.4 5,460,123 - +0.2 5,460,123 - +0.7 5,460,124 + +0.0 5,460,125 - +0.6 5,460,125 - +1.2 5,460,133 + -1.6 5,460,134 - +0.4 5,460,134 - +1.1 5,460,138 + +0.1 5,460,204 - +0.8 5,460,210 - -0.3 5,460,463 + CA265_RS22220 0.63 +1.4 5,460,481 - CA265_RS22220 0.68 +0.3 5,460,631 - +0.7 5,460,638 + -0.7 5,460,639 - -0.7 5,460,694 - -0.2 5,460,694 - -1.2 5,460,724 + -0.4 5,460,777 + CA265_RS22225 0.11 -1.3 5,460,777 + CA265_RS22225 0.11 -1.3 5,460,777 + CA265_RS22225 0.11 +0.6 5,460,777 + CA265_RS22225 0.11 +0.5 5,460,778 - CA265_RS22225 0.12 -2.2 5,460,779 + CA265_RS22225 0.12 +0.4 5,460,788 - CA265_RS22225 0.13 -0.9 5,460,857 + CA265_RS22225 0.26 -0.2 5,460,897 - CA265_RS22225 0.33 +0.1 5,460,986 + CA265_RS22225 0.49 -0.9 5,461,086 + CA265_RS22225 0.67 -1.0 5,461,087 - CA265_RS22225 0.68 -0.3 5,461,224 - -0.4 5,461,224 - -0.6 5,461,224 - +0.3 5,461,232 + -0.4 5,461,233 - +0.5 5,461,323 + +0.5 5,461,369 + CA265_RS22230 0.17 -0.7 5,461,374 + CA265_RS22230 0.18 -0.6 5,461,375 - CA265_RS22230 0.18 -0.1 5,461,375 - CA265_RS22230 0.18 +0.6 5,461,380 + CA265_RS22230 0.19 -2.3 5,461,425 + CA265_RS22230 0.27 +0.2 5,461,426 - CA265_RS22230 0.27 +1.3 5,461,426 - CA265_RS22230 0.27 +0.4 5,461,428 + CA265_RS22230 0.27 -0.5 5,461,429 - CA265_RS22230 0.28 -0.4 5,461,540 - CA265_RS22230 0.46 +0.1 5,461,555 - CA265_RS22230 0.49 -1.6 5,461,620 + CA265_RS22230 0.60 +0.0 5,461,620 + CA265_RS22230 0.60 -0.9 5,461,738 - CA265_RS22230 0.80 -0.1 5,461,738 - CA265_RS22230 0.80 +0.9 5,461,788 + CA265_RS22230 0.89 -1.4 5,461,789 - CA265_RS22230 0.89 +0.4 5,461,789 - CA265_RS22230 0.89 +0.0 5,461,894 - +0.3 5,461,894 - +0.4 5,461,898 + -1.4 5,461,899 - +0.2 5,461,933 - +1.1 5,461,933 - +0.5 5,461,937 + +0.4 5,461,951 - +0.2 5,461,964 - +1.0 5,461,981 - +1.1 5,462,164 + CA265_RS22235 0.17 -0.4
Or see this region's nucleotide sequence