Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18915

Experiment: R2A with Polymyxin B sulfate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS18905 and CA265_RS18910 are separated by 3 nucleotidesCA265_RS18910 and CA265_RS18915 are separated by 18 nucleotidesCA265_RS18915 and CA265_RS18920 are separated by 129 nucleotides CA265_RS18905: CA265_RS18905 - 50S ribosomal protein L13, at 4,699,576 to 4,700,019 _RS18905 CA265_RS18910: CA265_RS18910 - 30S ribosomal protein S9, at 4,700,023 to 4,700,409 _RS18910 CA265_RS18915: CA265_RS18915 - 30S ribosomal protein S2, at 4,700,428 to 4,701,261 _RS18915 CA265_RS18920: CA265_RS18920 - translation elongation factor Ts, at 4,701,391 to 4,702,236 _RS18920 Position (kb) 4700 4701 4702Strain fitness (log2 ratio) -2 -1 0 1at 4701.320 kb on + strandat 4701.348 kb on + strandat 4701.357 kb on + strandat 4702.234 kb on + strandat 4702.235 kb on - strandat 4702.253 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.016 mg/ml
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4,701,320 + -0.7
4,701,348 + -1.8
4,701,357 + +1.0
4,702,234 + +0.3
4,702,235 - -0.3
4,702,253 + -1.5

Or see this region's nucleotide sequence