Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04900

Experiment: R2A with Polymyxin B sulfate 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.016 mg/ml
1,166,035	+				+1.3
1,166,156	+		CA265_RS04895	0.20	+0.2
1,166,156	+		CA265_RS04895	0.20	-0.4
1,166,260	+		CA265_RS04895	0.30	-0.9
1,166,271	+		CA265_RS04895	0.31	-0.9
1,166,271	+		CA265_RS04895	0.31	-1.3
1,166,272	-		CA265_RS04895	0.31	+0.2
1,166,310	+		CA265_RS04895	0.34	-1.2
1,166,310	+		CA265_RS04895	0.34	-0.8
1,166,364	-		CA265_RS04895	0.39	-0.3
1,166,603	+		CA265_RS04895	0.61	-0.6
1,166,608	+		CA265_RS04895	0.61	-0.5
1,166,651	+		CA265_RS04895	0.65	+0.2
1,166,847	+		CA265_RS04895	0.83	-0.5
1,166,848	-		CA265_RS04895	0.83	-0.5
1,166,848	-		CA265_RS04895	0.83	+0.1
1,166,848	-		CA265_RS04895	0.83	-1.5
1,166,849	+		CA265_RS04895	0.83	-0.6
1,167,069	+				-0.2
1,167,070	-				-0.5
1,167,177	-		CA265_RS04900	0.11	+0.0
1,167,201	-		CA265_RS04900	0.13	-0.1
1,167,238	+		CA265_RS04900	0.16	-1.2
1,167,239	-		CA265_RS04900	0.16	-0.1
1,167,239	-		CA265_RS04900	0.16	-0.1
1,167,239	-		CA265_RS04900	0.16	+0.2
1,167,242	-		CA265_RS04900	0.17	+0.2
1,167,249	+		CA265_RS04900	0.17	-0.4
1,167,249	+		CA265_RS04900	0.17	-1.8
1,167,250	-		CA265_RS04900	0.17	+0.5
1,167,250	-		CA265_RS04900	0.17	+1.8
1,167,347	-		CA265_RS04900	0.25	-1.2
1,167,415	+		CA265_RS04900	0.30	-0.3
1,167,652	+		CA265_RS04900	0.49	-0.7
1,167,652	+		CA265_RS04900	0.49	-0.2
1,167,652	+		CA265_RS04900	0.49	-0.9
1,167,653	-		CA265_RS04900	0.49	+0.0
1,167,653	-		CA265_RS04900	0.49	-0.8
1,167,653	-		CA265_RS04900	0.49	-0.1
1,167,661	-		CA265_RS04900	0.50	-0.1
1,167,769	+		CA265_RS04900	0.58	+0.0
1,167,769	+		CA265_RS04900	0.58	-2.1
1,167,769	+		CA265_RS04900	0.58	-1.1
1,167,769	+		CA265_RS04900	0.58	-0.3
1,167,770	-		CA265_RS04900	0.58	-1.2
1,168,061	+		CA265_RS04900	0.81	-0.3
1,168,083	+		CA265_RS04900	0.83	+0.5
1,168,084	-		CA265_RS04900	0.83	+0.3
1,168,163	-		CA265_RS04900	0.89	+0.7
1,168,206	+				+0.4
1,168,207	-				+0.0
1,168,207	-				+0.6
1,168,295	+				+0.1
1,168,361	+				-0.0
1,168,362	-				-0.5
1,168,362	-				+0.3
1,168,392	+				-0.7
1,168,482	-		CA265_RS04905	0.16	+0.9
1,168,492	-		CA265_RS04905	0.17	+0.1
1,168,624	+		CA265_RS04905	0.30	-1.4
1,168,689	+		CA265_RS04905	0.36	-0.1
1,168,901	-		CA265_RS04905	0.56	-0.0
1,168,916	+		CA265_RS04905	0.57	-0.6
1,168,917	-		CA265_RS04905	0.57	-0.1
1,169,012	+		CA265_RS04905	0.66	+0.9
1,169,013	-		CA265_RS04905	0.66	+0.5
1,169,016	-		CA265_RS04905	0.66	-0.7
1,169,190	+				+0.2
1,169,190	+		CA265_RS04905	0.83	-0.3
1,169,191	-		CA265_RS04905	0.83	+0.8
1,169,260	+		CA265_RS04905	0.89	-0.4
1,169,283	+				-0.7
1,169,284	-				-0.5