Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_625

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_623 and Ac3H11_624 are separated by 110 nucleotidesAc3H11_624 and Ac3H11_625 are separated by 176 nucleotidesAc3H11_625 and Ac3H11_626 overlap by 2 nucleotides Ac3H11_623 - Permeases of the major facilitator superfamily, at 62,652 to 63,863 _623 Ac3H11_624 - Uncharacterized protein conserved in bacteria, at 63,974 to 64,573 _624 Ac3H11_625 - hypothetical protein, at 64,750 to 64,881 _625 Ac3H11_626 - putative membrane transport protein, at 64,880 to 66,013 _626 Position (kb) 64 65Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 63.871 kb on - strandat 63.999 kb on + strandat 63.999 kb on + strandat 64.186 kb on - strand, within Ac3H11_624at 64.649 kb on + strandat 64.689 kb on + strandat 64.689 kb on + strandat 64.689 kb on + strandat 64.690 kb on - strandat 64.690 kb on - strandat 64.719 kb on + strandat 64.719 kb on + strandat 64.719 kb on + strandat 64.719 kb on + strandat 64.719 kb on + strandat 64.719 kb on + strandat 64.719 kb on + strandat 64.720 kb on - strandat 64.922 kb on + strandat 64.922 kb on + strandat 64.922 kb on + strandat 64.923 kb on - strandat 64.923 kb on - strandat 64.977 kb on - strandat 64.997 kb on + strand, within Ac3H11_626at 64.997 kb on + strand, within Ac3H11_626at 64.997 kb on + strand, within Ac3H11_626at 64.997 kb on + strand, within Ac3H11_626at 64.997 kb on + strand, within Ac3H11_626at 64.997 kb on + strand, within Ac3H11_626at 64.998 kb on - strand, within Ac3H11_626at 64.998 kb on - strand, within Ac3H11_626at 65.423 kb on + strand, within Ac3H11_626at 65.423 kb on + strand, within Ac3H11_626at 65.424 kb on - strand, within Ac3H11_626at 65.424 kb on - strand, within Ac3H11_626at 65.424 kb on - strand, within Ac3H11_626at 65.591 kb on + strand, within Ac3H11_626at 65.591 kb on + strand, within Ac3H11_626at 65.592 kb on - strand, within Ac3H11_626at 65.612 kb on + strand, within Ac3H11_626at 65.612 kb on + strand, within Ac3H11_626at 65.612 kb on + strand, within Ac3H11_626at 65.691 kb on + strand, within Ac3H11_626at 65.691 kb on + strand, within Ac3H11_626at 65.768 kb on + strand, within Ac3H11_626at 65.768 kb on + strand, within Ac3H11_626at 65.768 kb on + strand, within Ac3H11_626at 65.768 kb on + strand, within Ac3H11_626at 65.769 kb on - strand, within Ac3H11_626at 65.769 kb on - strand, within Ac3H11_626at 65.769 kb on - strand, within Ac3H11_626at 65.769 kb on - strand, within Ac3H11_626

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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63,871 - -1.3
63,999 + +0.8
63,999 + +0.5
64,186 - Ac3H11_624 0.35 -1.0
64,649 + -0.4
64,689 + -0.0
64,689 + +0.1
64,689 + -0.3
64,690 - -2.1
64,690 - -0.3
64,719 + +0.4
64,719 + +0.7
64,719 + +0.3
64,719 + -0.2
64,719 + -0.3
64,719 + -2.1
64,719 + -0.2
64,720 - +0.1
64,922 + -1.8
64,922 + +0.3
64,922 + -0.6
64,923 - +2.6
64,923 - -0.5
64,977 - +1.5
64,997 + Ac3H11_626 0.10 -0.6
64,997 + Ac3H11_626 0.10 -0.2
64,997 + Ac3H11_626 0.10 +0.7
64,997 + Ac3H11_626 0.10 +0.6
64,997 + Ac3H11_626 0.10 +0.8
64,997 + Ac3H11_626 0.10 -1.0
64,998 - Ac3H11_626 0.10 +4.0
64,998 - Ac3H11_626 0.10 -0.2
65,423 + Ac3H11_626 0.48 +0.1
65,423 + Ac3H11_626 0.48 +0.4
65,424 - Ac3H11_626 0.48 -0.2
65,424 - Ac3H11_626 0.48 -1.4
65,424 - Ac3H11_626 0.48 -0.3
65,591 + Ac3H11_626 0.63 +0.4
65,591 + Ac3H11_626 0.63 -0.2
65,592 - Ac3H11_626 0.63 -0.5
65,612 + Ac3H11_626 0.65 -0.0
65,612 + Ac3H11_626 0.65 -0.6
65,612 + Ac3H11_626 0.65 -0.6
65,691 + Ac3H11_626 0.72 +1.3
65,691 + Ac3H11_626 0.72 -0.1
65,768 + Ac3H11_626 0.78 +0.5
65,768 + Ac3H11_626 0.78 -0.4
65,768 + Ac3H11_626 0.78 +0.2
65,768 + Ac3H11_626 0.78 +0.2
65,769 - Ac3H11_626 0.78 +0.1
65,769 - Ac3H11_626 0.78 -0.3
65,769 - Ac3H11_626 0.78 -0.5
65,769 - Ac3H11_626 0.78 +0.4

Or see this region's nucleotide sequence