Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4623 and Ac3H11_4624 are separated by 283 nucleotides Ac3H11_4624 and Ac3H11_4625 are separated by 349 nucleotides
Ac3H11_4623 - Tricarboxylate transport protein TctC, at 225,979 to 227,097
_4623
Ac3H11_4624 - Tricarboxylate transport protein TctC, at 227,381 to 228,367
_4624
Ac3H11_4625 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 228,717 to 229,964
_4625
Position (kb) 227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 226.646 kb on + strand, within Ac3H11_4623 at 226.647 kb on - strand, within Ac3H11_4623 at 226.661 kb on + strand, within Ac3H11_4623 at 226.661 kb on + strand, within Ac3H11_4623 at 226.662 kb on - strand, within Ac3H11_4623 at 226.713 kb on - strand, within Ac3H11_4623 at 227.174 kb on + strand at 227.391 kb on + strand at 227.391 kb on + strand at 227.391 kb on + strand at 227.392 kb on - strand at 227.599 kb on - strand, within Ac3H11_4624 at 227.599 kb on - strand, within Ac3H11_4624 at 227.706 kb on + strand, within Ac3H11_4624 at 227.707 kb on - strand, within Ac3H11_4624 at 227.817 kb on + strand, within Ac3H11_4624 at 227.817 kb on + strand, within Ac3H11_4624 at 227.817 kb on + strand, within Ac3H11_4624 at 228.018 kb on + strand, within Ac3H11_4624 at 228.018 kb on + strand, within Ac3H11_4624 at 228.058 kb on - strand, within Ac3H11_4624 at 228.105 kb on + strand, within Ac3H11_4624 at 228.106 kb on - strand, within Ac3H11_4624 at 228.174 kb on - strand, within Ac3H11_4624 at 228.174 kb on - strand, within Ac3H11_4624 at 228.379 kb on + strand at 228.396 kb on + strand at 228.428 kb on - strand at 228.428 kb on - strand at 228.428 kb on - strand at 228.430 kb on + strand at 228.430 kb on + strand at 228.430 kb on + strand at 228.431 kb on - strand at 228.431 kb on - strand at 228.529 kb on - strand at 228.724 kb on + strand at 228.725 kb on - strand at 228.861 kb on - strand, within Ac3H11_4625 at 229.241 kb on - strand, within Ac3H11_4625 at 229.271 kb on - strand, within Ac3H11_4625
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 226,646 + Ac3H11_4623 0.60 +0.0 226,647 - Ac3H11_4623 0.60 -0.3 226,661 + Ac3H11_4623 0.61 -0.3 226,661 + Ac3H11_4623 0.61 -0.8 226,662 - Ac3H11_4623 0.61 -1.1 226,713 - Ac3H11_4623 0.66 -0.0 227,174 + -0.3 227,391 + +0.2 227,391 + +0.2 227,391 + +0.3 227,392 - +1.5 227,599 - Ac3H11_4624 0.22 +1.8 227,599 - Ac3H11_4624 0.22 -0.1 227,706 + Ac3H11_4624 0.33 -1.5 227,707 - Ac3H11_4624 0.33 +0.6 227,817 + Ac3H11_4624 0.44 -0.4 227,817 + Ac3H11_4624 0.44 +0.5 227,817 + Ac3H11_4624 0.44 -0.7 228,018 + Ac3H11_4624 0.65 +0.4 228,018 + Ac3H11_4624 0.65 -0.1 228,058 - Ac3H11_4624 0.69 +0.3 228,105 + Ac3H11_4624 0.73 -1.4 228,106 - Ac3H11_4624 0.73 +0.3 228,174 - Ac3H11_4624 0.80 -0.4 228,174 - Ac3H11_4624 0.80 +0.8 228,379 + +0.1 228,396 + +1.2 228,428 - +0.2 228,428 - -0.9 228,428 - +0.1 228,430 + -1.0 228,430 + +0.2 228,430 + -0.7 228,431 - -0.7 228,431 - +1.0 228,529 - +0.1 228,724 + +1.1 228,725 - -0.6 228,861 - Ac3H11_4625 0.12 -2.8 229,241 - Ac3H11_4625 0.42 -1.2 229,271 - Ac3H11_4625 0.44 -3.0
Or see this region's nucleotide sequence