Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4396 and Ac3H11_4397 are separated by 272 nucleotides Ac3H11_4397 and Ac3H11_4398 are separated by 115 nucleotides Ac3H11_4398 and Ac3H11_4399 overlap by 4 nucleotides
Ac3H11_4396 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 191,909 to 193,873
_4396
Ac3H11_4397 - thioesterase superfamily, at 194,146 to 194,586
_4397
Ac3H11_4398 - ortholog of Bordetella pertussis (BX470248) BP3300, at 194,702 to 195,712
_4398
Ac3H11_4399 - Tricarboxylate transport protein TctC, at 195,709 to 196,686
_4399
Position (kb) 194
195
196 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.806 kb on + strand at 193.806 kb on + strand at 193.806 kb on + strand at 193.806 kb on + strand at 193.806 kb on + strand at 193.806 kb on + strand at 193.807 kb on - strand at 193.807 kb on - strand at 193.807 kb on - strand at 193.807 kb on - strand at 193.807 kb on - strand at 193.807 kb on - strand at 193.924 kb on + strand at 193.924 kb on + strand at 193.925 kb on - strand at 193.925 kb on - strand at 194.007 kb on + strand at 194.017 kb on + strand at 194.017 kb on + strand at 194.018 kb on - strand at 194.018 kb on - strand at 194.018 kb on - strand at 194.018 kb on - strand at 194.018 kb on - strand at 194.018 kb on - strand at 194.111 kb on + strand at 194.111 kb on + strand at 194.111 kb on + strand at 194.111 kb on + strand at 194.111 kb on + strand at 194.111 kb on + strand at 194.112 kb on - strand at 194.112 kb on - strand at 194.112 kb on - strand at 194.112 kb on - strand at 194.365 kb on + strand, within Ac3H11_4397 at 194.365 kb on + strand, within Ac3H11_4397 at 194.365 kb on + strand, within Ac3H11_4397 at 194.365 kb on + strand, within Ac3H11_4397 at 194.365 kb on + strand, within Ac3H11_4397 at 194.366 kb on - strand, within Ac3H11_4397 at 194.366 kb on - strand, within Ac3H11_4397 at 194.366 kb on - strand, within Ac3H11_4397 at 194.366 kb on - strand, within Ac3H11_4397 at 194.462 kb on - strand, within Ac3H11_4397 at 194.462 kb on - strand, within Ac3H11_4397 at 194.462 kb on - strand, within Ac3H11_4397 at 194.462 kb on - strand, within Ac3H11_4397 at 194.462 kb on - strand, within Ac3H11_4397 at 194.636 kb on + strand at 194.636 kb on + strand at 194.637 kb on - strand at 194.646 kb on - strand at 194.703 kb on + strand at 194.703 kb on + strand at 194.703 kb on + strand at 194.704 kb on - strand at 194.791 kb on - strand at 194.791 kb on - strand at 194.865 kb on + strand, within Ac3H11_4398 at 194.865 kb on + strand, within Ac3H11_4398 at 194.865 kb on + strand, within Ac3H11_4398 at 194.866 kb on - strand, within Ac3H11_4398 at 195.189 kb on + strand, within Ac3H11_4398 at 195.189 kb on + strand, within Ac3H11_4398 at 195.189 kb on + strand, within Ac3H11_4398 at 195.190 kb on - strand, within Ac3H11_4398 at 195.215 kb on + strand, within Ac3H11_4398 at 195.215 kb on + strand, within Ac3H11_4398 at 195.216 kb on - strand, within Ac3H11_4398 at 195.216 kb on - strand, within Ac3H11_4398 at 195.216 kb on - strand, within Ac3H11_4398 at 195.216 kb on - strand, within Ac3H11_4398 at 195.746 kb on + strand at 195.746 kb on + strand at 195.746 kb on + strand at 195.746 kb on + strand at 195.747 kb on - strand at 195.747 kb on - strand at 195.747 kb on - strand at 195.747 kb on - strand at 195.747 kb on - strand at 195.747 kb on - strand at 195.947 kb on + strand, within Ac3H11_4399 at 195.947 kb on + strand, within Ac3H11_4399 at 195.948 kb on - strand, within Ac3H11_4399 at 195.948 kb on - strand, within Ac3H11_4399 at 196.076 kb on + strand, within Ac3H11_4399 at 196.128 kb on - strand, within Ac3H11_4399 at 196.214 kb on + strand, within Ac3H11_4399 at 196.214 kb on + strand, within Ac3H11_4399 at 196.215 kb on - strand, within Ac3H11_4399 at 196.215 kb on - strand, within Ac3H11_4399 at 196.215 kb on - strand, within Ac3H11_4399 at 196.215 kb on - strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.350 kb on - strand, within Ac3H11_4399 at 196.350 kb on - strand, within Ac3H11_4399 at 196.350 kb on - strand, within Ac3H11_4399 at 196.350 kb on - strand, within Ac3H11_4399 at 196.415 kb on + strand, within Ac3H11_4399 at 196.416 kb on - strand, within Ac3H11_4399 at 196.416 kb on - strand, within Ac3H11_4399 at 196.552 kb on - strand, within Ac3H11_4399
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 193,806 + +0.1 193,806 + -1.2 193,806 + -0.7 193,806 + -0.3 193,806 + -0.5 193,806 + -0.3 193,807 - +0.0 193,807 - +0.1 193,807 - -0.4 193,807 - -0.3 193,807 - +0.0 193,807 - -0.6 193,924 + -1.4 193,924 + -1.4 193,925 - +0.6 193,925 - +0.5 194,007 + +1.0 194,017 + +0.4 194,017 + -0.1 194,018 - +1.3 194,018 - +0.2 194,018 - +0.5 194,018 - -1.3 194,018 - +0.0 194,018 - +0.4 194,111 + -0.4 194,111 + +0.5 194,111 + +0.5 194,111 + +0.0 194,111 + -0.3 194,111 + +0.1 194,112 - -0.4 194,112 - +0.4 194,112 - -0.1 194,112 - +1.4 194,365 + Ac3H11_4397 0.50 +0.4 194,365 + Ac3H11_4397 0.50 -0.3 194,365 + Ac3H11_4397 0.50 -1.0 194,365 + Ac3H11_4397 0.50 -0.7 194,365 + Ac3H11_4397 0.50 -0.3 194,366 - Ac3H11_4397 0.50 -0.5 194,366 - Ac3H11_4397 0.50 -1.1 194,366 - Ac3H11_4397 0.50 +1.1 194,366 - Ac3H11_4397 0.50 -0.9 194,462 - Ac3H11_4397 0.72 +0.2 194,462 - Ac3H11_4397 0.72 +0.4 194,462 - Ac3H11_4397 0.72 +0.2 194,462 - Ac3H11_4397 0.72 +0.7 194,462 - Ac3H11_4397 0.72 -0.3 194,636 + +1.5 194,636 + -1.3 194,637 - -0.1 194,646 - +0.4 194,703 + +0.5 194,703 + +0.4 194,703 + +0.0 194,704 - +0.7 194,791 - -0.2 194,791 - -0.8 194,865 + Ac3H11_4398 0.16 +0.0 194,865 + Ac3H11_4398 0.16 +0.2 194,865 + Ac3H11_4398 0.16 -0.2 194,866 - Ac3H11_4398 0.16 -0.9 195,189 + Ac3H11_4398 0.48 -0.0 195,189 + Ac3H11_4398 0.48 -1.2 195,189 + Ac3H11_4398 0.48 +0.7 195,190 - Ac3H11_4398 0.48 -1.9 195,215 + Ac3H11_4398 0.51 +0.9 195,215 + Ac3H11_4398 0.51 +0.6 195,216 - Ac3H11_4398 0.51 -0.3 195,216 - Ac3H11_4398 0.51 -0.2 195,216 - Ac3H11_4398 0.51 +1.5 195,216 - Ac3H11_4398 0.51 +0.2 195,746 + +1.0 195,746 + -0.4 195,746 + -0.3 195,746 + +1.1 195,747 - +0.5 195,747 - +0.3 195,747 - +0.3 195,747 - +0.6 195,747 - -0.3 195,747 - +0.9 195,947 + Ac3H11_4399 0.24 +0.6 195,947 + Ac3H11_4399 0.24 -0.5 195,948 - Ac3H11_4399 0.24 -0.2 195,948 - Ac3H11_4399 0.24 -0.1 196,076 + Ac3H11_4399 0.38 +0.4 196,128 - Ac3H11_4399 0.43 +0.3 196,214 + Ac3H11_4399 0.52 -1.1 196,214 + Ac3H11_4399 0.52 +0.3 196,215 - Ac3H11_4399 0.52 +0.2 196,215 - Ac3H11_4399 0.52 +0.1 196,215 - Ac3H11_4399 0.52 -0.3 196,215 - Ac3H11_4399 0.52 -0.1 196,349 + Ac3H11_4399 0.65 +0.7 196,349 + Ac3H11_4399 0.65 +0.4 196,349 + Ac3H11_4399 0.65 +1.0 196,349 + Ac3H11_4399 0.65 +1.9 196,349 + Ac3H11_4399 0.65 -1.5 196,349 + Ac3H11_4399 0.65 -0.3 196,350 - Ac3H11_4399 0.66 +0.3 196,350 - Ac3H11_4399 0.66 +0.7 196,350 - Ac3H11_4399 0.66 -0.2 196,350 - Ac3H11_4399 0.66 -0.2 196,415 + Ac3H11_4399 0.72 +0.5 196,416 - Ac3H11_4399 0.72 -1.0 196,416 - Ac3H11_4399 0.72 +0.3 196,552 - Ac3H11_4399 0.86 -0.2
Or see this region's nucleotide sequence