Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4317

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4316 and Ac3H11_4317 overlap by 4 nucleotidesAc3H11_4317 and Ac3H11_4318 overlap by 4 nucleotidesAc3H11_4318 and Ac3H11_4319 are separated by 84 nucleotides Ac3H11_4316 - Alkanal monooxygenase alpha chain (EC 1.14.14.3), at 92,370 to 93,410 _4316 Ac3H11_4317 - FIG00537953: hypothetical protein, at 93,407 to 94,087 _4317 Ac3H11_4318 - Bll6900 protein, at 94,084 to 94,698 _4318 Ac3H11_4319 - FIG00581545: hypothetical protein, at 94,783 to 95,517 _4319 Position (kb) 93 94 95Strain fitness (log2 ratio) -2 -1 0 1at 92.713 kb on - strand, within Ac3H11_4316at 92.713 kb on - strand, within Ac3H11_4316at 92.956 kb on - strand, within Ac3H11_4316at 92.956 kb on - strand, within Ac3H11_4316at 93.156 kb on + strand, within Ac3H11_4316at 93.156 kb on + strand, within Ac3H11_4316at 93.156 kb on + strand, within Ac3H11_4316at 93.157 kb on - strand, within Ac3H11_4316at 93.549 kb on - strand, within Ac3H11_4317at 93.665 kb on + strand, within Ac3H11_4317at 93.665 kb on + strand, within Ac3H11_4317at 93.665 kb on + strand, within Ac3H11_4317at 93.666 kb on - strand, within Ac3H11_4317at 93.666 kb on - strand, within Ac3H11_4317at 93.666 kb on - strand, within Ac3H11_4317at 93.666 kb on - strand, within Ac3H11_4317at 93.756 kb on - strand, within Ac3H11_4317at 93.764 kb on + strand, within Ac3H11_4317at 93.764 kb on + strand, within Ac3H11_4317at 93.765 kb on - strand, within Ac3H11_4317at 94.193 kb on + strand, within Ac3H11_4318at 94.193 kb on + strand, within Ac3H11_4318at 94.207 kb on + strand, within Ac3H11_4318at 94.208 kb on - strand, within Ac3H11_4318at 94.208 kb on - strand, within Ac3H11_4318at 94.247 kb on - strand, within Ac3H11_4318at 94.315 kb on + strand, within Ac3H11_4318at 94.315 kb on + strand, within Ac3H11_4318at 94.393 kb on + strand, within Ac3H11_4318at 94.394 kb on - strand, within Ac3H11_4318at 94.394 kb on - strand, within Ac3H11_4318at 94.394 kb on - strand, within Ac3H11_4318at 94.394 kb on - strand, within Ac3H11_4318at 95.012 kb on + strand, within Ac3H11_4319at 95.012 kb on + strand, within Ac3H11_4319at 95.013 kb on - strand, within Ac3H11_4319at 95.013 kb on - strand, within Ac3H11_4319at 95.013 kb on - strand, within Ac3H11_4319

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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92,713 - Ac3H11_4316 0.33 +0.6
92,713 - Ac3H11_4316 0.33 +0.2
92,956 - Ac3H11_4316 0.56 +1.1
92,956 - Ac3H11_4316 0.56 -0.2
93,156 + Ac3H11_4316 0.76 +1.0
93,156 + Ac3H11_4316 0.76 -0.1
93,156 + Ac3H11_4316 0.76 -0.4
93,157 - Ac3H11_4316 0.76 +0.8
93,549 - Ac3H11_4317 0.21 +0.0
93,665 + Ac3H11_4317 0.38 +0.8
93,665 + Ac3H11_4317 0.38 -0.9
93,665 + Ac3H11_4317 0.38 +0.5
93,666 - Ac3H11_4317 0.38 +1.7
93,666 - Ac3H11_4317 0.38 -0.2
93,666 - Ac3H11_4317 0.38 -0.1
93,666 - Ac3H11_4317 0.38 +0.4
93,756 - Ac3H11_4317 0.51 +0.4
93,764 + Ac3H11_4317 0.52 +0.8
93,764 + Ac3H11_4317 0.52 +0.3
93,765 - Ac3H11_4317 0.53 +0.9
94,193 + Ac3H11_4318 0.18 -2.5
94,193 + Ac3H11_4318 0.18 -0.0
94,207 + Ac3H11_4318 0.20 +0.7
94,208 - Ac3H11_4318 0.20 +0.1
94,208 - Ac3H11_4318 0.20 +0.2
94,247 - Ac3H11_4318 0.27 +0.1
94,315 + Ac3H11_4318 0.38 +1.3
94,315 + Ac3H11_4318 0.38 +0.6
94,393 + Ac3H11_4318 0.50 -0.4
94,394 - Ac3H11_4318 0.50 +0.0
94,394 - Ac3H11_4318 0.50 -0.7
94,394 - Ac3H11_4318 0.50 +0.4
94,394 - Ac3H11_4318 0.50 +0.4
95,012 + Ac3H11_4319 0.31 +0.7
95,012 + Ac3H11_4319 0.31 -0.0
95,013 - Ac3H11_4319 0.31 -0.0
95,013 - Ac3H11_4319 0.31 -0.2
95,013 - Ac3H11_4319 0.31 -0.7

Or see this region's nucleotide sequence