Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3812

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3810 and Ac3H11_3811 are separated by 68 nucleotidesAc3H11_3811 and Ac3H11_3812 are separated by 145 nucleotidesAc3H11_3812 and Ac3H11_3813 are separated by 4 nucleotides Ac3H11_3810 - Transcriptional regulator, TetR family, at 25,787 to 26,407 _3810 Ac3H11_3811 - putative membrane protein, at 26,476 to 26,883 _3811 Ac3H11_3812 - Hydrogen peroxide-inducible genes activator, at 27,029 to 27,991 _3812 Ac3H11_3813 - FIG074102: hypothetical protein, at 27,996 to 29,054 _3813 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1at 26.121 kb on + strand, within Ac3H11_3810at 26.122 kb on - strand, within Ac3H11_3810at 26.376 kb on + strandat 26.376 kb on + strandat 26.377 kb on - strandat 26.377 kb on - strandat 26.377 kb on - strandat 26.399 kb on + strandat 26.400 kb on - strandat 26.400 kb on - strandat 26.433 kb on + strandat 26.433 kb on + strandat 26.434 kb on - strandat 26.447 kb on - strandat 26.457 kb on - strandat 26.471 kb on - strandat 26.471 kb on - strandat 26.502 kb on + strandat 26.560 kb on + strand, within Ac3H11_3811at 26.560 kb on + strand, within Ac3H11_3811at 26.560 kb on + strand, within Ac3H11_3811at 26.560 kb on + strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.572 kb on + strand, within Ac3H11_3811at 26.573 kb on - strand, within Ac3H11_3811at 26.573 kb on - strand, within Ac3H11_3811at 26.573 kb on - strand, within Ac3H11_3811at 26.787 kb on + strand, within Ac3H11_3811at 26.787 kb on + strand, within Ac3H11_3811at 26.788 kb on - strand, within Ac3H11_3811at 26.881 kb on + strandat 26.882 kb on - strandat 26.939 kb on + strandat 26.939 kb on + strandat 26.939 kb on + strandat 26.940 kb on - strandat 26.940 kb on - strandat 26.940 kb on - strandat 26.996 kb on + strandat 27.030 kb on + strandat 27.030 kb on + strandat 27.031 kb on - strandat 27.031 kb on - strandat 27.031 kb on - strandat 27.031 kb on - strandat 27.127 kb on + strand, within Ac3H11_3812at 27.127 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.501 kb on + strand, within Ac3H11_3812at 27.501 kb on + strand, within Ac3H11_3812at 27.501 kb on + strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.552 kb on + strand, within Ac3H11_3812at 27.552 kb on + strand, within Ac3H11_3812at 27.552 kb on + strand, within Ac3H11_3812at 27.966 kb on + strandat 28.105 kb on + strand, within Ac3H11_3813at 28.148 kb on - strand, within Ac3H11_3813at 28.243 kb on + strand, within Ac3H11_3813at 28.244 kb on - strand, within Ac3H11_3813at 28.306 kb on + strand, within Ac3H11_3813at 28.306 kb on + strand, within Ac3H11_3813at 28.307 kb on - strand, within Ac3H11_3813at 28.307 kb on - strand, within Ac3H11_3813at 28.327 kb on + strand, within Ac3H11_3813at 28.327 kb on + strand, within Ac3H11_3813at 28.327 kb on + strand, within Ac3H11_3813at 28.327 kb on + strand, within Ac3H11_3813at 28.328 kb on - strand, within Ac3H11_3813at 28.328 kb on - strand, within Ac3H11_3813at 28.328 kb on - strand, within Ac3H11_3813at 28.328 kb on - strand, within Ac3H11_3813at 28.328 kb on - strand, within Ac3H11_3813at 28.335 kb on + strand, within Ac3H11_3813at 28.335 kb on + strand, within Ac3H11_3813at 28.335 kb on + strand, within Ac3H11_3813at 28.335 kb on + strand, within Ac3H11_3813at 28.335 kb on + strand, within Ac3H11_3813at 28.336 kb on - strand, within Ac3H11_3813at 28.336 kb on - strand, within Ac3H11_3813at 28.336 kb on - strand, within Ac3H11_3813at 28.646 kb on + strand, within Ac3H11_3813at 28.647 kb on - strand, within Ac3H11_3813at 28.647 kb on - strand, within Ac3H11_3813at 28.660 kb on + strand, within Ac3H11_3813at 28.661 kb on - strand, within Ac3H11_3813at 28.685 kb on + strand, within Ac3H11_3813at 28.685 kb on + strand, within Ac3H11_3813at 28.685 kb on + strand, within Ac3H11_3813at 28.685 kb on + strand, within Ac3H11_3813at 28.686 kb on - strand, within Ac3H11_3813at 28.686 kb on - strand, within Ac3H11_3813at 28.709 kb on + strand, within Ac3H11_3813at 28.709 kb on + strand, within Ac3H11_3813at 28.710 kb on - strand, within Ac3H11_3813at 28.710 kb on - strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.786 kb on + strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.787 kb on - strand, within Ac3H11_3813at 28.921 kb on + strand, within Ac3H11_3813at 28.921 kb on + strand, within Ac3H11_3813at 28.922 kb on - strand, within Ac3H11_3813at 28.922 kb on - strand, within Ac3H11_3813at 28.922 kb on - strand, within Ac3H11_3813

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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26,121 + Ac3H11_3810 0.54 +1.6
26,122 - Ac3H11_3810 0.54 +1.1
26,376 + +0.4
26,376 + +0.5
26,377 - +0.2
26,377 - +0.8
26,377 - +0.9
26,399 + +0.3
26,400 - -1.5
26,400 - +0.3
26,433 + -0.1
26,433 + -0.1
26,434 - +0.3
26,447 - -0.2
26,457 - +0.7
26,471 - -0.0
26,471 - -0.4
26,502 + -0.6
26,560 + Ac3H11_3811 0.21 -0.8
26,560 + Ac3H11_3811 0.21 +0.0
26,560 + Ac3H11_3811 0.21 -0.4
26,560 + Ac3H11_3811 0.21 -0.9
26,561 - Ac3H11_3811 0.21 +0.5
26,561 - Ac3H11_3811 0.21 -0.4
26,561 - Ac3H11_3811 0.21 +0.5
26,561 - Ac3H11_3811 0.21 -0.2
26,572 + Ac3H11_3811 0.24 -0.7
26,573 - Ac3H11_3811 0.24 -1.1
26,573 - Ac3H11_3811 0.24 -1.1
26,573 - Ac3H11_3811 0.24 +0.6
26,787 + Ac3H11_3811 0.76 +0.0
26,787 + Ac3H11_3811 0.76 -0.3
26,788 - Ac3H11_3811 0.76 -0.6
26,881 + +0.7
26,882 - +0.3
26,939 + -0.5
26,939 + +1.2
26,939 + -1.0
26,940 - -0.6
26,940 - +0.3
26,940 - -0.7
26,996 + -1.3
27,030 + +0.5
27,030 + -1.3
27,031 - +0.3
27,031 - +0.8
27,031 - +0.5
27,031 - -0.3
27,127 + Ac3H11_3812 0.10 +0.5
27,127 + Ac3H11_3812 0.10 +0.4
27,489 + Ac3H11_3812 0.48 +0.3
27,489 + Ac3H11_3812 0.48 +0.3
27,489 + Ac3H11_3812 0.48 -0.6
27,489 + Ac3H11_3812 0.48 +0.1
27,489 + Ac3H11_3812 0.48 -0.5
27,489 + Ac3H11_3812 0.48 -0.1
27,501 + Ac3H11_3812 0.49 +0.8
27,501 + Ac3H11_3812 0.49 -1.2
27,501 + Ac3H11_3812 0.49 -0.3
27,502 - Ac3H11_3812 0.49 +0.7
27,502 - Ac3H11_3812 0.49 +0.4
27,502 - Ac3H11_3812 0.49 +0.2
27,502 - Ac3H11_3812 0.49 +0.0
27,552 + Ac3H11_3812 0.54 -0.2
27,552 + Ac3H11_3812 0.54 +0.8
27,552 + Ac3H11_3812 0.54 +0.7
27,966 + +0.8
28,105 + Ac3H11_3813 0.10 +1.0
28,148 - Ac3H11_3813 0.14 -0.0
28,243 + Ac3H11_3813 0.23 +0.9
28,244 - Ac3H11_3813 0.23 -0.0
28,306 + Ac3H11_3813 0.29 +0.4
28,306 + Ac3H11_3813 0.29 -1.9
28,307 - Ac3H11_3813 0.29 -0.6
28,307 - Ac3H11_3813 0.29 +0.2
28,327 + Ac3H11_3813 0.31 +0.8
28,327 + Ac3H11_3813 0.31 +0.4
28,327 + Ac3H11_3813 0.31 +0.1
28,327 + Ac3H11_3813 0.31 +0.2
28,328 - Ac3H11_3813 0.31 -0.8
28,328 - Ac3H11_3813 0.31 +0.3
28,328 - Ac3H11_3813 0.31 -0.0
28,328 - Ac3H11_3813 0.31 +0.0
28,328 - Ac3H11_3813 0.31 +0.2
28,335 + Ac3H11_3813 0.32 +0.9
28,335 + Ac3H11_3813 0.32 -0.4
28,335 + Ac3H11_3813 0.32 +0.0
28,335 + Ac3H11_3813 0.32 +0.3
28,335 + Ac3H11_3813 0.32 -0.2
28,336 - Ac3H11_3813 0.32 +0.3
28,336 - Ac3H11_3813 0.32 -1.0
28,336 - Ac3H11_3813 0.32 -1.3
28,646 + Ac3H11_3813 0.61 -0.6
28,647 - Ac3H11_3813 0.61 -1.7
28,647 - Ac3H11_3813 0.61 -1.2
28,660 + Ac3H11_3813 0.63 -1.4
28,661 - Ac3H11_3813 0.63 +0.3
28,685 + Ac3H11_3813 0.65 +0.2
28,685 + Ac3H11_3813 0.65 -1.0
28,685 + Ac3H11_3813 0.65 -1.8
28,685 + Ac3H11_3813 0.65 +0.2
28,686 - Ac3H11_3813 0.65 -0.0
28,686 - Ac3H11_3813 0.65 -2.2
28,709 + Ac3H11_3813 0.67 +0.0
28,709 + Ac3H11_3813 0.67 +0.1
28,710 - Ac3H11_3813 0.67 -2.7
28,710 - Ac3H11_3813 0.67 -0.8
28,786 + Ac3H11_3813 0.75 +0.6
28,786 + Ac3H11_3813 0.75 -0.5
28,786 + Ac3H11_3813 0.75 +1.3
28,786 + Ac3H11_3813 0.75 +1.2
28,786 + Ac3H11_3813 0.75 +0.2
28,786 + Ac3H11_3813 0.75 +0.4
28,786 + Ac3H11_3813 0.75 -0.3
28,786 + Ac3H11_3813 0.75 -1.3
28,787 - Ac3H11_3813 0.75 +1.1
28,787 - Ac3H11_3813 0.75 +0.3
28,787 - Ac3H11_3813 0.75 +1.4
28,787 - Ac3H11_3813 0.75 -1.4
28,787 - Ac3H11_3813 0.75 -0.0
28,787 - Ac3H11_3813 0.75 -0.6
28,787 - Ac3H11_3813 0.75 -0.8
28,787 - Ac3H11_3813 0.75 -0.4
28,787 - Ac3H11_3813 0.75 -0.3
28,921 + Ac3H11_3813 0.87 +0.4
28,921 + Ac3H11_3813 0.87 -1.1
28,922 - Ac3H11_3813 0.87 -0.8
28,922 - Ac3H11_3813 0.87 +1.1
28,922 - Ac3H11_3813 0.87 +1.2

Or see this region's nucleotide sequence