Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2924

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2923 and Ac3H11_2924 are separated by 30 nucleotidesAc3H11_2924 and Ac3H11_2925 are separated by 36 nucleotides Ac3H11_2923 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,239,459 to 1,240,349 _2923 Ac3H11_2924 - 5'-nucleotidase (EC 3.1.3.5), at 1,240,380 to 1,242,164 _2924 Ac3H11_2925 - Chorismate synthase (EC 4.2.3.5), at 1,242,201 to 1,243,298 _2925 Position (kb) 1240 1241 1242 1243Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1239.699 kb on + strand, within Ac3H11_2923at 1239.699 kb on + strand, within Ac3H11_2923at 1239.699 kb on + strand, within Ac3H11_2923at 1239.699 kb on + strand, within Ac3H11_2923at 1239.699 kb on + strand, within Ac3H11_2923at 1239.699 kb on + strand, within Ac3H11_2923at 1239.699 kb on + strand, within Ac3H11_2923at 1239.699 kb on + strand, within Ac3H11_2923at 1239.700 kb on - strand, within Ac3H11_2923at 1239.700 kb on - strand, within Ac3H11_2923at 1239.700 kb on - strand, within Ac3H11_2923at 1239.700 kb on - strand, within Ac3H11_2923at 1239.700 kb on - strand, within Ac3H11_2923at 1239.700 kb on - strand, within Ac3H11_2923at 1239.732 kb on + strand, within Ac3H11_2923at 1239.733 kb on - strand, within Ac3H11_2923at 1239.877 kb on + strand, within Ac3H11_2923at 1239.877 kb on + strand, within Ac3H11_2923at 1239.878 kb on - strand, within Ac3H11_2923at 1239.878 kb on - strand, within Ac3H11_2923at 1239.936 kb on + strand, within Ac3H11_2923at 1239.936 kb on + strand, within Ac3H11_2923at 1239.936 kb on + strand, within Ac3H11_2923at 1239.936 kb on + strand, within Ac3H11_2923at 1240.129 kb on - strand, within Ac3H11_2923at 1240.444 kb on + strandat 1240.444 kb on + strandat 1240.444 kb on + strandat 1240.640 kb on - strand, within Ac3H11_2924at 1240.753 kb on - strand, within Ac3H11_2924at 1240.783 kb on + strand, within Ac3H11_2924at 1240.784 kb on - strand, within Ac3H11_2924at 1241.207 kb on - strand, within Ac3H11_2924at 1241.207 kb on - strand, within Ac3H11_2924at 1241.257 kb on + strand, within Ac3H11_2924at 1241.257 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.269 kb on + strand, within Ac3H11_2924at 1241.270 kb on - strand, within Ac3H11_2924at 1241.270 kb on - strand, within Ac3H11_2924at 1241.270 kb on - strand, within Ac3H11_2924at 1241.270 kb on - strand, within Ac3H11_2924at 1241.270 kb on - strand, within Ac3H11_2924at 1241.270 kb on - strand, within Ac3H11_2924at 1241.270 kb on - strand, within Ac3H11_2924at 1241.270 kb on - strand, within Ac3H11_2924at 1241.270 kb on - strandat 1241.270 kb on - strand, within Ac3H11_2924at 1241.580 kb on - strand, within Ac3H11_2924at 1241.932 kb on + strand, within Ac3H11_2924at 1241.932 kb on + strand, within Ac3H11_2924at 1241.932 kb on + strand, within Ac3H11_2924at 1241.933 kb on - strand, within Ac3H11_2924at 1241.933 kb on - strand, within Ac3H11_2924at 1241.933 kb on - strand, within Ac3H11_2924at 1241.933 kb on - strand, within Ac3H11_2924at 1242.164 kb on + strandat 1242.164 kb on + strandat 1242.193 kb on - strandat 1242.193 kb on - strandat 1242.193 kb on - strandat 1242.193 kb on - strandat 1242.193 kb on - strandat 1242.193 kb on - strandat 1242.193 kb on - strandat 1242.193 kb on - strandat 1242.202 kb on + strandat 1242.202 kb on + strandat 1242.635 kb on - strand, within Ac3H11_2925at 1242.635 kb on - strand, within Ac3H11_2925at 1242.635 kb on - strand, within Ac3H11_2925at 1242.635 kb on - strand, within Ac3H11_2925at 1242.727 kb on + strand, within Ac3H11_2925at 1242.727 kb on + strand, within Ac3H11_2925at 1242.727 kb on + strand, within Ac3H11_2925at 1242.728 kb on - strand, within Ac3H11_2925at 1242.728 kb on - strand, within Ac3H11_2925at 1242.728 kb on - strand, within Ac3H11_2925at 1242.736 kb on + strand, within Ac3H11_2925at 1242.854 kb on - strand, within Ac3H11_2925at 1242.854 kb on - strand, within Ac3H11_2925at 1242.955 kb on + strand, within Ac3H11_2925at 1242.955 kb on + strand, within Ac3H11_2925at 1242.967 kb on + strand, within Ac3H11_2925at 1242.968 kb on - strand, within Ac3H11_2925at 1242.968 kb on - strand, within Ac3H11_2925at 1242.968 kb on - strand, within Ac3H11_2925at 1242.973 kb on + strand, within Ac3H11_2925at 1242.973 kb on + strand, within Ac3H11_2925at 1242.974 kb on - strand, within Ac3H11_2925at 1242.974 kb on - strand, within Ac3H11_2925at 1243.015 kb on + strand, within Ac3H11_2925at 1243.015 kb on + strand, within Ac3H11_2925at 1243.016 kb on - strand, within Ac3H11_2925

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,239,699 + Ac3H11_2923 0.27 +0.8
1,239,699 + Ac3H11_2923 0.27 +1.4
1,239,699 + Ac3H11_2923 0.27 +0.1
1,239,699 + Ac3H11_2923 0.27 -0.2
1,239,699 + Ac3H11_2923 0.27 -1.9
1,239,699 + Ac3H11_2923 0.27 +0.4
1,239,699 + Ac3H11_2923 0.27 -0.1
1,239,699 + Ac3H11_2923 0.27 +0.0
1,239,700 - Ac3H11_2923 0.27 +0.2
1,239,700 - Ac3H11_2923 0.27 +0.8
1,239,700 - Ac3H11_2923 0.27 +0.4
1,239,700 - Ac3H11_2923 0.27 -0.7
1,239,700 - Ac3H11_2923 0.27 +1.3
1,239,700 - Ac3H11_2923 0.27 -1.2
1,239,732 + Ac3H11_2923 0.31 +0.5
1,239,733 - Ac3H11_2923 0.31 -0.5
1,239,877 + Ac3H11_2923 0.47 -0.1
1,239,877 + Ac3H11_2923 0.47 -0.7
1,239,878 - Ac3H11_2923 0.47 +0.1
1,239,878 - Ac3H11_2923 0.47 -0.2
1,239,936 + Ac3H11_2923 0.54 -0.7
1,239,936 + Ac3H11_2923 0.54 -0.7
1,239,936 + Ac3H11_2923 0.54 -0.5
1,239,936 + Ac3H11_2923 0.54 -0.4
1,240,129 - Ac3H11_2923 0.75 +0.6
1,240,444 + +0.2
1,240,444 + +0.3
1,240,444 + +1.2
1,240,640 - Ac3H11_2924 0.15 +0.7
1,240,753 - Ac3H11_2924 0.21 -0.5
1,240,783 + Ac3H11_2924 0.23 +0.7
1,240,784 - Ac3H11_2924 0.23 -0.4
1,241,207 - Ac3H11_2924 0.46 +0.8
1,241,207 - Ac3H11_2924 0.46 -1.2
1,241,257 + Ac3H11_2924 0.49 +0.1
1,241,257 + Ac3H11_2924 0.49 +0.5
1,241,269 + Ac3H11_2924 0.50 -0.7
1,241,269 + Ac3H11_2924 0.50 +0.9
1,241,269 + Ac3H11_2924 0.50 -0.4
1,241,269 + Ac3H11_2924 0.50 -0.9
1,241,269 + Ac3H11_2924 0.50 -2.8
1,241,269 + Ac3H11_2924 0.50 +0.1
1,241,269 + Ac3H11_2924 0.50 +0.1
1,241,269 + Ac3H11_2924 0.50 -0.5
1,241,269 + Ac3H11_2924 0.50 -1.1
1,241,269 + Ac3H11_2924 0.50 +0.3
1,241,269 + Ac3H11_2924 0.50 +0.6
1,241,269 + Ac3H11_2924 0.50 -0.1
1,241,269 + Ac3H11_2924 0.50 -0.2
1,241,269 + Ac3H11_2924 0.50 -0.1
1,241,269 + Ac3H11_2924 0.50 +0.2
1,241,269 + Ac3H11_2924 0.50 +0.1
1,241,270 - Ac3H11_2924 0.50 -1.4
1,241,270 - Ac3H11_2924 0.50 +0.4
1,241,270 - Ac3H11_2924 0.50 -0.8
1,241,270 - Ac3H11_2924 0.50 -1.4
1,241,270 - Ac3H11_2924 0.50 -1.1
1,241,270 - Ac3H11_2924 0.50 +0.7
1,241,270 - Ac3H11_2924 0.50 +0.6
1,241,270 - Ac3H11_2924 0.50 -0.1
1,241,270 - -0.1
1,241,270 - Ac3H11_2924 0.50 +0.4
1,241,580 - Ac3H11_2924 0.67 -1.0
1,241,932 + Ac3H11_2924 0.87 -0.4
1,241,932 + Ac3H11_2924 0.87 +0.5
1,241,932 + Ac3H11_2924 0.87 +0.6
1,241,933 - Ac3H11_2924 0.87 +0.8
1,241,933 - Ac3H11_2924 0.87 -0.6
1,241,933 - Ac3H11_2924 0.87 -0.8
1,241,933 - Ac3H11_2924 0.87 +0.8
1,242,164 + -1.3
1,242,164 + -1.0
1,242,193 - -0.8
1,242,193 - -1.0
1,242,193 - -1.0
1,242,193 - -0.1
1,242,193 - -0.6
1,242,193 - +0.2
1,242,193 - -0.3
1,242,193 - +0.3
1,242,202 + +0.9
1,242,202 + -0.4
1,242,635 - Ac3H11_2925 0.40 -0.9
1,242,635 - Ac3H11_2925 0.40 -2.4
1,242,635 - Ac3H11_2925 0.40 -2.0
1,242,635 - Ac3H11_2925 0.40 -4.1
1,242,727 + Ac3H11_2925 0.48 -1.1
1,242,727 + Ac3H11_2925 0.48 -3.7
1,242,727 + Ac3H11_2925 0.48 -3.3
1,242,728 - Ac3H11_2925 0.48 -4.0
1,242,728 - Ac3H11_2925 0.48 -1.3
1,242,728 - Ac3H11_2925 0.48 -1.3
1,242,736 + Ac3H11_2925 0.49 -1.5
1,242,854 - Ac3H11_2925 0.59 -2.7
1,242,854 - Ac3H11_2925 0.59 -1.9
1,242,955 + Ac3H11_2925 0.69 -3.3
1,242,955 + Ac3H11_2925 0.69 -1.1
1,242,967 + Ac3H11_2925 0.70 -0.6
1,242,968 - Ac3H11_2925 0.70 -2.3
1,242,968 - Ac3H11_2925 0.70 -3.4
1,242,968 - Ac3H11_2925 0.70 -2.5
1,242,973 + Ac3H11_2925 0.70 -2.9
1,242,973 + Ac3H11_2925 0.70 -2.4
1,242,974 - Ac3H11_2925 0.70 -3.6
1,242,974 - Ac3H11_2925 0.70 -3.1
1,243,015 + Ac3H11_2925 0.74 -3.3
1,243,015 + Ac3H11_2925 0.74 -3.2
1,243,016 - Ac3H11_2925 0.74 -2.6

Or see this region's nucleotide sequence