Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2060

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2059 and Ac3H11_2060 are separated by 208 nucleotidesAc3H11_2060 and Ac3H11_2061 are separated by 140 nucleotides Ac3H11_2059 - Transaldolase (EC 2.2.1.2), at 282,791 to 283,741 _2059 Ac3H11_2060 - two-component system, sensor protein, at 283,950 to 285,344 _2060 Ac3H11_2061 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 285,485 to 286,201 _2061 Position (kb) 283 284 285 286Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 283.127 kb on + strand, within Ac3H11_2059at 283.319 kb on + strand, within Ac3H11_2059at 283.319 kb on + strand, within Ac3H11_2059at 283.319 kb on + strand, within Ac3H11_2059at 283.320 kb on - strand, within Ac3H11_2059at 283.320 kb on - strand, within Ac3H11_2059at 283.320 kb on - strand, within Ac3H11_2059at 283.328 kb on + strandat 283.328 kb on + strand, within Ac3H11_2059at 283.328 kb on + strand, within Ac3H11_2059at 283.328 kb on + strand, within Ac3H11_2059at 283.329 kb on - strand, within Ac3H11_2059at 283.329 kb on - strand, within Ac3H11_2059at 283.412 kb on + strand, within Ac3H11_2059at 283.412 kb on + strand, within Ac3H11_2059at 283.413 kb on - strand, within Ac3H11_2059at 283.421 kb on + strand, within Ac3H11_2059at 283.421 kb on + strand, within Ac3H11_2059at 283.422 kb on - strand, within Ac3H11_2059at 283.422 kb on - strand, within Ac3H11_2059at 283.616 kb on + strand, within Ac3H11_2059at 283.617 kb on - strand, within Ac3H11_2059at 284.224 kb on + strand, within Ac3H11_2060at 284.224 kb on + strand, within Ac3H11_2060at 284.225 kb on - strand, within Ac3H11_2060at 284.311 kb on + strand, within Ac3H11_2060at 284.312 kb on - strand, within Ac3H11_2060at 284.695 kb on - strand, within Ac3H11_2060at 284.791 kb on + strand, within Ac3H11_2060at 284.791 kb on + strand, within Ac3H11_2060at 284.791 kb on + strand, within Ac3H11_2060at 284.792 kb on - strand, within Ac3H11_2060at 284.792 kb on - strand, within Ac3H11_2060at 284.792 kb on - strand, within Ac3H11_2060at 284.932 kb on + strand, within Ac3H11_2060at 284.933 kb on - strand, within Ac3H11_2060at 284.986 kb on + strand, within Ac3H11_2060at 284.987 kb on - strand, within Ac3H11_2060at 284.992 kb on + strand, within Ac3H11_2060at 284.992 kb on + strand, within Ac3H11_2060at 284.993 kb on - strand, within Ac3H11_2060at 284.993 kb on - strand, within Ac3H11_2060at 284.993 kb on - strand, within Ac3H11_2060at 285.082 kb on + strand, within Ac3H11_2060at 285.082 kb on + strand, within Ac3H11_2060at 285.082 kb on + strand, within Ac3H11_2060at 285.082 kb on + strand, within Ac3H11_2060at 285.082 kb on + strand, within Ac3H11_2060at 285.082 kb on + strand, within Ac3H11_2060at 285.082 kb on + strand, within Ac3H11_2060at 285.082 kb on + strand, within Ac3H11_2060at 285.082 kb on + strand, within Ac3H11_2060at 285.083 kb on - strand, within Ac3H11_2060at 285.083 kb on - strand, within Ac3H11_2060at 285.083 kb on - strand, within Ac3H11_2060at 285.083 kb on - strand, within Ac3H11_2060at 285.083 kb on - strand, within Ac3H11_2060at 285.083 kb on - strand, within Ac3H11_2060at 285.083 kb on - strand, within Ac3H11_2060at 285.083 kb on - strand, within Ac3H11_2060at 285.083 kb on - strand, within Ac3H11_2060at 285.354 kb on + strandat 285.504 kb on + strandat 285.504 kb on + strandat 285.504 kb on + strandat 285.504 kb on + strandat 285.505 kb on - strandat 285.505 kb on - strandat 285.505 kb on - strandat 285.505 kb on - strandat 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.573 kb on + strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.574 kb on - strand, within Ac3H11_2061at 285.907 kb on - strand, within Ac3H11_2061at 285.907 kb on - strand, within Ac3H11_2061at 285.907 kb on - strand, within Ac3H11_2061at 286.125 kb on + strand, within Ac3H11_2061at 286.125 kb on + strand, within Ac3H11_2061at 286.125 kb on + strand, within Ac3H11_2061at 286.125 kb on + strand, within Ac3H11_2061at 286.126 kb on - strand, within Ac3H11_2061at 286.212 kb on + strandat 286.212 kb on + strandat 286.283 kb on + strandat 286.283 kb on + strandat 286.296 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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283,127 + Ac3H11_2059 0.35 -3.6
283,319 + Ac3H11_2059 0.56 -1.6
283,319 + Ac3H11_2059 0.56 -3.4
283,319 + Ac3H11_2059 0.56 -3.7
283,320 - Ac3H11_2059 0.56 -3.2
283,320 - Ac3H11_2059 0.56 -4.9
283,320 - Ac3H11_2059 0.56 -3.2
283,328 + -0.3
283,328 + Ac3H11_2059 0.56 -1.6
283,328 + Ac3H11_2059 0.56 -3.1
283,328 + Ac3H11_2059 0.56 -4.6
283,329 - Ac3H11_2059 0.57 -2.8
283,329 - Ac3H11_2059 0.57 -3.2
283,412 + Ac3H11_2059 0.65 -2.5
283,412 + Ac3H11_2059 0.65 -4.1
283,413 - Ac3H11_2059 0.65 -2.7
283,421 + Ac3H11_2059 0.66 -2.6
283,421 + Ac3H11_2059 0.66 -3.2
283,422 - Ac3H11_2059 0.66 -2.3
283,422 - Ac3H11_2059 0.66 -3.1
283,616 + Ac3H11_2059 0.87 -3.9
283,617 - Ac3H11_2059 0.87 -3.1
284,224 + Ac3H11_2060 0.20 +0.3
284,224 + Ac3H11_2060 0.20 +0.4
284,225 - Ac3H11_2060 0.20 +0.9
284,311 + Ac3H11_2060 0.26 -0.0
284,312 - Ac3H11_2060 0.26 +1.0
284,695 - Ac3H11_2060 0.53 +0.4
284,791 + Ac3H11_2060 0.60 +0.8
284,791 + Ac3H11_2060 0.60 +0.6
284,791 + Ac3H11_2060 0.60 +1.1
284,792 - Ac3H11_2060 0.60 -0.1
284,792 - Ac3H11_2060 0.60 +0.1
284,792 - Ac3H11_2060 0.60 +0.2
284,932 + Ac3H11_2060 0.70 +0.8
284,933 - Ac3H11_2060 0.70 -1.1
284,986 + Ac3H11_2060 0.74 +0.4
284,987 - Ac3H11_2060 0.74 -0.0
284,992 + Ac3H11_2060 0.75 +0.2
284,992 + Ac3H11_2060 0.75 -0.3
284,993 - Ac3H11_2060 0.75 +0.2
284,993 - Ac3H11_2060 0.75 +1.0
284,993 - Ac3H11_2060 0.75 -0.3
285,082 + Ac3H11_2060 0.81 -0.8
285,082 + Ac3H11_2060 0.81 -1.2
285,082 + Ac3H11_2060 0.81 +0.4
285,082 + Ac3H11_2060 0.81 +0.3
285,082 + Ac3H11_2060 0.81 -0.1
285,082 + Ac3H11_2060 0.81 +1.2
285,082 + Ac3H11_2060 0.81 +0.8
285,082 + Ac3H11_2060 0.81 -0.0
285,082 + Ac3H11_2060 0.81 +0.5
285,083 - Ac3H11_2060 0.81 +0.4
285,083 - Ac3H11_2060 0.81 +1.2
285,083 - Ac3H11_2060 0.81 +1.1
285,083 - Ac3H11_2060 0.81 +0.4
285,083 - Ac3H11_2060 0.81 -0.6
285,083 - Ac3H11_2060 0.81 +0.7
285,083 - Ac3H11_2060 0.81 -0.3
285,083 - Ac3H11_2060 0.81 +1.1
285,083 - Ac3H11_2060 0.81 -0.0
285,354 + +0.6
285,504 + -2.4
285,504 + -1.6
285,504 + -0.8
285,504 + -1.3
285,505 - -0.5
285,505 - -0.7
285,505 - -0.9
285,505 - -0.3
285,573 + Ac3H11_2061 0.12 +0.0
285,573 + Ac3H11_2061 0.12 -2.8
285,573 + Ac3H11_2061 0.12 -1.4
285,573 + Ac3H11_2061 0.12 -1.1
285,573 + Ac3H11_2061 0.12 -1.0
285,573 + Ac3H11_2061 0.12 -2.0
285,573 + Ac3H11_2061 0.12 +0.0
285,573 + Ac3H11_2061 0.12 -0.4
285,573 + Ac3H11_2061 0.12 -1.0
285,573 + Ac3H11_2061 0.12 +0.8
285,573 + Ac3H11_2061 0.12 -0.6
285,573 + Ac3H11_2061 0.12 -0.6
285,573 + Ac3H11_2061 0.12 -0.3
285,573 + Ac3H11_2061 0.12 +0.2
285,574 - Ac3H11_2061 0.12 -1.5
285,574 - Ac3H11_2061 0.12 -0.6
285,574 - Ac3H11_2061 0.12 -1.1
285,574 - Ac3H11_2061 0.12 -0.6
285,574 - Ac3H11_2061 0.12 -0.9
285,574 - Ac3H11_2061 0.12 -0.7
285,574 - Ac3H11_2061 0.12 -1.7
285,574 - Ac3H11_2061 0.12 -0.5
285,574 - Ac3H11_2061 0.12 -0.9
285,574 - Ac3H11_2061 0.12 -0.4
285,574 - Ac3H11_2061 0.12 -1.7
285,574 - Ac3H11_2061 0.12 +0.0
285,574 - Ac3H11_2061 0.12 -2.5
285,574 - Ac3H11_2061 0.12 -2.1
285,574 - Ac3H11_2061 0.12 -1.0
285,907 - Ac3H11_2061 0.59 -0.8
285,907 - Ac3H11_2061 0.59 -0.9
285,907 - Ac3H11_2061 0.59 -1.6
286,125 + Ac3H11_2061 0.89 -1.0
286,125 + Ac3H11_2061 0.89 -1.0
286,125 + Ac3H11_2061 0.89 -0.3
286,125 + Ac3H11_2061 0.89 -1.5
286,126 - Ac3H11_2061 0.89 +0.8
286,212 + -0.2
286,212 + +0.1
286,283 + +1.0
286,283 + +0.3
286,296 + +0.8

Or see this region's nucleotide sequence