Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00390 and ABIE51_RS00395 are separated by 390 nucleotides ABIE51_RS00395 and ABIE51_RS00400 are separated by 55 nucleotides
ABIE51_RS00390: ABIE51_RS00390 - '5'-nucleotidase, lipoprotein e(P4) family' pseudo=_no_value transl_table=11, at 83,308 to 84,229
_RS00390
ABIE51_RS00395: ABIE51_RS00395 - hypothetical protein, at 84,620 to 84,961
_RS00395
ABIE51_RS00400: ABIE51_RS00400 - fimbrial protein, at 85,017 to 86,117
_RS00400
Position (kb) 84
85 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 83.677 kb on + strand, within ABIE51_RS00390 at 83.677 kb on + strand, within ABIE51_RS00390 at 83.678 kb on - strand, within ABIE51_RS00390 at 83.710 kb on + strand, within ABIE51_RS00390 at 83.711 kb on - strand, within ABIE51_RS00390 at 83.711 kb on - strand, within ABIE51_RS00390 at 83.818 kb on + strand, within ABIE51_RS00390 at 83.818 kb on + strand, within ABIE51_RS00390 at 83.818 kb on + strand, within ABIE51_RS00390 at 83.819 kb on - strand, within ABIE51_RS00390 at 83.819 kb on - strand, within ABIE51_RS00390 at 83.819 kb on - strand, within ABIE51_RS00390 at 83.819 kb on - strand, within ABIE51_RS00390 at 83.819 kb on - strand, within ABIE51_RS00390 at 83.990 kb on - strand, within ABIE51_RS00390 at 84.083 kb on + strand, within ABIE51_RS00390 at 84.131 kb on + strand, within ABIE51_RS00390 at 84.131 kb on + strand, within ABIE51_RS00390 at 84.131 kb on + strand, within ABIE51_RS00390 at 84.131 kb on + strand, within ABIE51_RS00390 at 84.132 kb on - strand, within ABIE51_RS00390 at 84.237 kb on - strand at 84.281 kb on + strand at 84.281 kb on + strand at 84.298 kb on + strand at 84.298 kb on + strand at 84.299 kb on - strand at 84.299 kb on - strand at 84.299 kb on - strand at 84.299 kb on - strand at 84.299 kb on - strand at 84.592 kb on + strand at 84.592 kb on + strand at 84.592 kb on + strand at 84.592 kb on + strand at 84.592 kb on + strand at 84.592 kb on + strand at 84.592 kb on + strand at 84.592 kb on + strand at 84.592 kb on + strand at 84.593 kb on - strand at 84.593 kb on - strand at 84.593 kb on - strand at 84.593 kb on - strand at 84.593 kb on - strand at 84.593 kb on - strand at 84.593 kb on - strand at 84.593 kb on - strand at 84.600 kb on + strand at 84.600 kb on + strand at 84.600 kb on + strand at 84.600 kb on + strand at 84.600 kb on + strand at 84.600 kb on + strand at 84.600 kb on + strand at 84.600 kb on + strand at 84.601 kb on - strand at 84.601 kb on - strand at 84.601 kb on - strand at 84.601 kb on - strand at 84.601 kb on - strand at 84.601 kb on - strand at 84.601 kb on - strand at 84.669 kb on + strand, within ABIE51_RS00395 at 84.669 kb on + strand, within ABIE51_RS00395 at 84.669 kb on + strand, within ABIE51_RS00395 at 84.669 kb on + strand, within ABIE51_RS00395 at 84.669 kb on + strand, within ABIE51_RS00395 at 84.669 kb on + strand, within ABIE51_RS00395 at 84.669 kb on + strand, within ABIE51_RS00395 at 84.669 kb on + strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.670 kb on - strand, within ABIE51_RS00395 at 84.672 kb on + strand, within ABIE51_RS00395 at 84.672 kb on + strand, within ABIE51_RS00395 at 84.672 kb on + strand, within ABIE51_RS00395 at 84.673 kb on - strand, within ABIE51_RS00395 at 84.673 kb on - strand, within ABIE51_RS00395 at 84.673 kb on - strand, within ABIE51_RS00395 at 84.673 kb on - strand, within ABIE51_RS00395 at 84.673 kb on - strand, within ABIE51_RS00395 at 84.673 kb on - strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.836 kb on + strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.837 kb on - strand, within ABIE51_RS00395 at 84.890 kb on + strand, within ABIE51_RS00395 at 84.890 kb on + strand, within ABIE51_RS00395 at 84.890 kb on + strand, within ABIE51_RS00395 at 84.890 kb on + strand, within ABIE51_RS00395 at 84.890 kb on + strand, within ABIE51_RS00395 at 84.890 kb on + strand, within ABIE51_RS00395 at 84.890 kb on + strand, within ABIE51_RS00395 at 84.891 kb on - strand, within ABIE51_RS00395 at 84.891 kb on - strand, within ABIE51_RS00395 at 84.891 kb on - strand, within ABIE51_RS00395 at 84.891 kb on - strand, within ABIE51_RS00395 at 84.893 kb on + strand, within ABIE51_RS00395 at 84.893 kb on + strand, within ABIE51_RS00395 at 84.894 kb on - strand, within ABIE51_RS00395 at 84.894 kb on - strand, within ABIE51_RS00395 at 84.894 kb on - strand, within ABIE51_RS00395 at 84.894 kb on - strand, within ABIE51_RS00395 at 84.894 kb on - strand, within ABIE51_RS00395 at 84.902 kb on + strand, within ABIE51_RS00395 at 84.902 kb on + strand, within ABIE51_RS00395 at 84.902 kb on + strand, within ABIE51_RS00395 at 84.903 kb on - strand, within ABIE51_RS00395 at 84.903 kb on - strand, within ABIE51_RS00395 at 84.903 kb on - strand, within ABIE51_RS00395 at 84.903 kb on - strand, within ABIE51_RS00395 at 84.953 kb on + strand at 84.953 kb on + strand at 84.953 kb on + strand at 84.953 kb on + strand at 84.953 kb on + strand at 84.953 kb on + strand at 84.953 kb on + strand at 84.953 kb on + strand at 84.954 kb on - strand at 84.954 kb on - strand at 84.954 kb on - strand at 84.974 kb on - strand at 84.974 kb on - strand at 84.996 kb on + strand at 84.996 kb on + strand at 85.024 kb on + strand at 85.024 kb on + strand at 85.024 kb on + strand at 85.024 kb on + strand at 85.024 kb on + strand at 85.024 kb on + strand at 85.025 kb on - strand at 85.025 kb on - strand at 85.025 kb on - strand at 85.025 kb on - strand at 85.025 kb on - strand at 85.025 kb on - strand at 85.025 kb on - strand at 85.090 kb on + strand at 85.090 kb on + strand at 85.090 kb on + strand at 85.090 kb on + strand at 85.091 kb on - strand at 85.093 kb on + strand at 85.093 kb on + strand at 85.093 kb on + strand at 85.093 kb on + strand at 85.093 kb on + strand at 85.093 kb on + strand at 85.093 kb on + strand at 85.093 kb on + strand at 85.094 kb on - strand at 85.094 kb on - strand at 85.094 kb on - strand at 85.094 kb on - strand at 85.094 kb on - strand at 85.094 kb on - strand at 85.100 kb on + strand at 85.101 kb on - strand at 85.504 kb on + strand, within ABIE51_RS00400 at 85.505 kb on - strand, within ABIE51_RS00400 at 85.510 kb on + strand, within ABIE51_RS00400 at 85.510 kb on + strand, within ABIE51_RS00400 at 85.510 kb on + strand, within ABIE51_RS00400 at 85.510 kb on + strand, within ABIE51_RS00400 at 85.510 kb on + strand, within ABIE51_RS00400 at 85.511 kb on - strand, within ABIE51_RS00400 at 85.511 kb on - strand, within ABIE51_RS00400 at 85.511 kb on - strand, within ABIE51_RS00400 at 85.831 kb on + strand, within ABIE51_RS00400 at 85.831 kb on + strand, within ABIE51_RS00400 at 85.831 kb on + strand, within ABIE51_RS00400 at 85.832 kb on - strand, within ABIE51_RS00400 at 85.832 kb on - strand, within ABIE51_RS00400 at 85.832 kb on - strand, within ABIE51_RS00400 at 85.832 kb on - strand, within ABIE51_RS00400
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 83,677 + ABIE51_RS00390 0.40 +0.9 83,677 + ABIE51_RS00390 0.40 -2.0 83,678 - ABIE51_RS00390 0.40 +1.1 83,710 + ABIE51_RS00390 0.44 -1.3 83,711 - ABIE51_RS00390 0.44 -0.4 83,711 - ABIE51_RS00390 0.44 +0.1 83,818 + ABIE51_RS00390 0.55 -1.4 83,818 + ABIE51_RS00390 0.55 -0.4 83,818 + ABIE51_RS00390 0.55 -0.8 83,819 - ABIE51_RS00390 0.55 -0.6 83,819 - ABIE51_RS00390 0.55 -0.5 83,819 - ABIE51_RS00390 0.55 -1.4 83,819 - ABIE51_RS00390 0.55 +0.7 83,819 - ABIE51_RS00390 0.55 -1.3 83,990 - ABIE51_RS00390 0.74 -1.2 84,083 + ABIE51_RS00390 0.84 +1.1 84,131 + ABIE51_RS00390 0.89 +0.1 84,131 + ABIE51_RS00390 0.89 +1.8 84,131 + ABIE51_RS00390 0.89 +0.0 84,131 + ABIE51_RS00390 0.89 +1.0 84,132 - ABIE51_RS00390 0.89 +1.9 84,237 - -0.5 84,281 + +1.3 84,281 + -0.0 84,298 + -1.4 84,298 + -0.5 84,299 - +1.9 84,299 - -0.2 84,299 - -0.2 84,299 - +1.9 84,299 - +0.5 84,592 + +0.5 84,592 + +0.3 84,592 + +0.1 84,592 + +0.7 84,592 + +0.5 84,592 + +1.3 84,592 + +0.5 84,592 + -1.0 84,592 + +0.4 84,593 - -2.0 84,593 - +1.9 84,593 - +2.3 84,593 - +1.9 84,593 - -1.5 84,593 - +0.8 84,593 - -0.1 84,593 - -0.2 84,600 + +0.5 84,600 + -1.5 84,600 + +0.5 84,600 + -0.4 84,600 + -2.0 84,600 + +0.2 84,600 + +0.0 84,600 + -0.2 84,601 - +1.7 84,601 - +1.0 84,601 - -0.3 84,601 - -0.3 84,601 - -0.5 84,601 - +0.9 84,601 - -1.0 84,669 + ABIE51_RS00395 0.14 +0.1 84,669 + ABIE51_RS00395 0.14 -0.7 84,669 + ABIE51_RS00395 0.14 -0.3 84,669 + ABIE51_RS00395 0.14 -1.1 84,669 + ABIE51_RS00395 0.14 -0.8 84,669 + ABIE51_RS00395 0.14 -0.7 84,669 + ABIE51_RS00395 0.14 +0.1 84,669 + ABIE51_RS00395 0.14 -1.1 84,670 - ABIE51_RS00395 0.15 +0.3 84,670 - ABIE51_RS00395 0.15 -1.2 84,670 - ABIE51_RS00395 0.15 -1.2 84,670 - ABIE51_RS00395 0.15 -0.3 84,670 - ABIE51_RS00395 0.15 -0.5 84,670 - ABIE51_RS00395 0.15 +0.3 84,670 - ABIE51_RS00395 0.15 -0.2 84,670 - ABIE51_RS00395 0.15 -0.1 84,670 - ABIE51_RS00395 0.15 +1.4 84,670 - ABIE51_RS00395 0.15 +0.3 84,670 - ABIE51_RS00395 0.15 -1.3 84,670 - ABIE51_RS00395 0.15 +1.1 84,670 - ABIE51_RS00395 0.15 -1.3 84,670 - ABIE51_RS00395 0.15 +0.9 84,670 - ABIE51_RS00395 0.15 -0.2 84,672 + ABIE51_RS00395 0.15 -0.9 84,672 + ABIE51_RS00395 0.15 -1.0 84,672 + ABIE51_RS00395 0.15 -0.1 84,673 - ABIE51_RS00395 0.15 +1.2 84,673 - ABIE51_RS00395 0.15 -0.6 84,673 - ABIE51_RS00395 0.15 -0.6 84,673 - ABIE51_RS00395 0.15 -0.8 84,673 - ABIE51_RS00395 0.15 +0.8 84,673 - ABIE51_RS00395 0.15 +0.8 84,836 + ABIE51_RS00395 0.63 -0.2 84,836 + ABIE51_RS00395 0.63 +0.2 84,836 + ABIE51_RS00395 0.63 +0.3 84,836 + ABIE51_RS00395 0.63 -0.6 84,836 + ABIE51_RS00395 0.63 +0.5 84,836 + ABIE51_RS00395 0.63 +1.2 84,836 + ABIE51_RS00395 0.63 +0.3 84,836 + ABIE51_RS00395 0.63 -0.3 84,836 + ABIE51_RS00395 0.63 +2.9 84,836 + ABIE51_RS00395 0.63 -2.2 84,836 + ABIE51_RS00395 0.63 +1.1 84,836 + ABIE51_RS00395 0.63 +0.2 84,837 - ABIE51_RS00395 0.63 +0.2 84,837 - ABIE51_RS00395 0.63 +0.8 84,837 - ABIE51_RS00395 0.63 -0.8 84,837 - ABIE51_RS00395 0.63 -0.0 84,837 - ABIE51_RS00395 0.63 +0.7 84,837 - ABIE51_RS00395 0.63 -0.6 84,837 - ABIE51_RS00395 0.63 -0.4 84,837 - ABIE51_RS00395 0.63 +1.1 84,837 - ABIE51_RS00395 0.63 +0.6 84,837 - ABIE51_RS00395 0.63 -0.4 84,837 - ABIE51_RS00395 0.63 +0.5 84,837 - ABIE51_RS00395 0.63 +0.6 84,890 + ABIE51_RS00395 0.79 -0.5 84,890 + ABIE51_RS00395 0.79 +0.1 84,890 + ABIE51_RS00395 0.79 -0.0 84,890 + ABIE51_RS00395 0.79 -0.4 84,890 + ABIE51_RS00395 0.79 +0.1 84,890 + ABIE51_RS00395 0.79 +0.8 84,890 + ABIE51_RS00395 0.79 +1.2 84,891 - ABIE51_RS00395 0.79 -1.0 84,891 - ABIE51_RS00395 0.79 +0.5 84,891 - ABIE51_RS00395 0.79 +1.0 84,891 - ABIE51_RS00395 0.79 -0.5 84,893 + ABIE51_RS00395 0.80 -1.1 84,893 + ABIE51_RS00395 0.80 +0.5 84,894 - ABIE51_RS00395 0.80 -0.7 84,894 - ABIE51_RS00395 0.80 +0.0 84,894 - ABIE51_RS00395 0.80 -0.1 84,894 - ABIE51_RS00395 0.80 +0.1 84,894 - ABIE51_RS00395 0.80 -0.3 84,902 + ABIE51_RS00395 0.82 +0.9 84,902 + ABIE51_RS00395 0.82 -1.4 84,902 + ABIE51_RS00395 0.82 -0.2 84,903 - ABIE51_RS00395 0.83 -0.3 84,903 - ABIE51_RS00395 0.83 +0.4 84,903 - ABIE51_RS00395 0.83 +1.3 84,903 - ABIE51_RS00395 0.83 -0.7 84,953 + -0.3 84,953 + +0.1 84,953 + -0.7 84,953 + -0.0 84,953 + +0.7 84,953 + +1.8 84,953 + +0.6 84,953 + +1.0 84,954 - -0.1 84,954 - +0.9 84,954 - -0.3 84,974 - -0.1 84,974 - +2.2 84,996 + -0.1 84,996 + -1.6 85,024 + +1.1 85,024 + +0.1 85,024 + -1.0 85,024 + -0.7 85,024 + -0.2 85,024 + -0.1 85,025 - +1.3 85,025 - +0.1 85,025 - +0.3 85,025 - -2.1 85,025 - +1.3 85,025 - +0.5 85,025 - -1.0 85,090 + -0.9 85,090 + +0.6 85,090 + -0.7 85,090 + -0.1 85,091 - -0.4 85,093 + -0.8 85,093 + -0.0 85,093 + -1.7 85,093 + -0.3 85,093 + +0.7 85,093 + -1.4 85,093 + +0.1 85,093 + -1.3 85,094 - +0.3 85,094 - -0.3 85,094 - +0.3 85,094 - +0.0 85,094 - -0.4 85,094 - -0.1 85,100 + -0.1 85,101 - -0.3 85,504 + ABIE51_RS00400 0.44 +0.1 85,505 - ABIE51_RS00400 0.44 -1.0 85,510 + ABIE51_RS00400 0.45 -0.5 85,510 + ABIE51_RS00400 0.45 -0.2 85,510 + ABIE51_RS00400 0.45 -1.0 85,510 + ABIE51_RS00400 0.45 +3.3 85,510 + ABIE51_RS00400 0.45 +0.4 85,511 - ABIE51_RS00400 0.45 +0.1 85,511 - ABIE51_RS00400 0.45 +0.7 85,511 - ABIE51_RS00400 0.45 -0.0 85,831 + ABIE51_RS00400 0.74 -0.1 85,831 + ABIE51_RS00400 0.74 +0.3 85,831 + ABIE51_RS00400 0.74 +0.6 85,832 - ABIE51_RS00400 0.74 +0.3 85,832 - ABIE51_RS00400 0.74 +0.2 85,832 - ABIE51_RS00400 0.74 -0.8 85,832 - ABIE51_RS00400 0.74 -3.0
Or see this region's nucleotide sequence