Strain Fitness in Pantoea sp. MT58 around IAI47_19890

Experiment: Nickel (II) chloride 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19885 and IAI47_19890 overlap by 4 nucleotidesIAI47_19890 and IAI47_19895 overlap by 4 nucleotidesIAI47_19895 and IAI47_19900 are separated by 12 nucleotides IAI47_19885: IAI47_19885 - NAD(P)/FAD-dependent oxidoreductase, at 203,545 to 204,999 _19885 IAI47_19890: IAI47_19890 - hypothetical protein, at 204,996 to 205,478 _19890 IAI47_19895: IAI47_19895 - peroxidase-related enzyme, at 205,475 to 206,041 _19895 IAI47_19900: IAI47_19900 - amino acid ABC transporter ATP-binding protein, at 206,054 to 206,791 _19900 Position (kb) 204 205 206Strain fitness (log2 ratio) -2 -1 0 1 2at 204.009 kb on + strand, within IAI47_19885at 204.144 kb on + strand, within IAI47_19885at 204.145 kb on - strand, within IAI47_19885at 204.197 kb on + strand, within IAI47_19885at 204.198 kb on - strand, within IAI47_19885at 204.198 kb on - strand, within IAI47_19885at 204.304 kb on - strand, within IAI47_19885at 204.367 kb on + strand, within IAI47_19885at 204.367 kb on + strand, within IAI47_19885at 204.367 kb on + strand, within IAI47_19885at 204.367 kb on + strand, within IAI47_19885at 204.367 kb on + strand, within IAI47_19885at 204.367 kb on + strand, within IAI47_19885at 204.368 kb on - strand, within IAI47_19885at 204.368 kb on - strand, within IAI47_19885at 204.368 kb on - strand, within IAI47_19885at 204.407 kb on - strand, within IAI47_19885at 204.455 kb on + strand, within IAI47_19885at 204.456 kb on - strand, within IAI47_19885at 204.624 kb on + strand, within IAI47_19885at 204.636 kb on + strand, within IAI47_19885at 204.637 kb on - strand, within IAI47_19885at 204.642 kb on + strand, within IAI47_19885at 204.642 kb on + strand, within IAI47_19885at 204.642 kb on + strand, within IAI47_19885at 204.642 kb on + strand, within IAI47_19885at 204.643 kb on - strand, within IAI47_19885at 204.643 kb on - strand, within IAI47_19885at 204.643 kb on - strand, within IAI47_19885at 204.662 kb on - strand, within IAI47_19885at 204.762 kb on - strand, within IAI47_19885at 204.907 kb on + strandat 204.907 kb on + strandat 204.907 kb on + strandat 204.907 kb on + strandat 204.907 kb on + strandat 204.908 kb on - strandat 204.908 kb on - strandat 204.917 kb on + strandat 204.917 kb on + strandat 204.918 kb on - strandat 204.918 kb on - strandat 204.927 kb on + strandat 204.959 kb on + strandat 205.007 kb on + strandat 205.007 kb on + strandat 205.007 kb on + strandat 205.028 kb on - strandat 205.028 kb on - strandat 205.030 kb on + strandat 205.047 kb on + strand, within IAI47_19890at 205.169 kb on + strand, within IAI47_19890at 205.170 kb on - strand, within IAI47_19890at 205.210 kb on - strand, within IAI47_19890at 205.210 kb on - strand, within IAI47_19890at 205.427 kb on + strand, within IAI47_19890at 205.456 kb on + strandat 205.456 kb on + strandat 205.456 kb on + strandat 205.456 kb on + strandat 205.456 kb on + strandat 205.457 kb on - strandat 205.457 kb on - strandat 205.457 kb on - strandat 205.517 kb on + strandat 205.517 kb on + strandat 205.517 kb on + strandat 205.517 kb on + strandat 205.517 kb on + strandat 205.517 kb on + strandat 205.518 kb on - strandat 205.518 kb on - strandat 205.518 kb on - strandat 205.518 kb on - strandat 205.518 kb on - strandat 205.518 kb on - strandat 205.518 kb on - strandat 205.519 kb on + strandat 205.519 kb on + strandat 205.519 kb on + strandat 205.519 kb on + strandat 205.520 kb on - strandat 205.520 kb on - strandat 205.520 kb on - strandat 205.530 kb on + strandat 205.531 kb on - strandat 205.531 kb on - strandat 205.604 kb on + strand, within IAI47_19895at 205.605 kb on - strand, within IAI47_19895at 205.605 kb on - strand, within IAI47_19895at 205.620 kb on + strand, within IAI47_19895at 205.621 kb on - strand, within IAI47_19895at 205.637 kb on + strand, within IAI47_19895at 205.637 kb on + strand, within IAI47_19895at 205.637 kb on + strand, within IAI47_19895at 205.637 kb on + strand, within IAI47_19895at 205.638 kb on - strand, within IAI47_19895at 205.638 kb on - strand, within IAI47_19895at 205.638 kb on - strand, within IAI47_19895at 205.638 kb on - strand, within IAI47_19895at 205.638 kb on - strand, within IAI47_19895at 205.638 kb on - strand, within IAI47_19895at 205.638 kb on - strand, within IAI47_19895at 205.656 kb on + strand, within IAI47_19895at 205.669 kb on + strand, within IAI47_19895at 205.669 kb on + strand, within IAI47_19895at 205.669 kb on + strand, within IAI47_19895at 205.669 kb on + strand, within IAI47_19895at 205.669 kb on + strand, within IAI47_19895at 205.669 kb on + strand, within IAI47_19895at 205.670 kb on - strand, within IAI47_19895at 205.670 kb on - strand, within IAI47_19895at 205.670 kb on - strand, within IAI47_19895at 205.670 kb on - strand, within IAI47_19895at 205.670 kb on - strand, within IAI47_19895at 205.670 kb on - strand, within IAI47_19895at 205.670 kb on - strand, within IAI47_19895at 205.670 kb on - strand, within IAI47_19895at 205.670 kb on - strand, within IAI47_19895at 205.673 kb on + strand, within IAI47_19895at 205.673 kb on + strand, within IAI47_19895at 205.673 kb on + strand, within IAI47_19895at 205.673 kb on + strand, within IAI47_19895at 205.673 kb on + strand, within IAI47_19895at 205.673 kb on + strand, within IAI47_19895at 205.674 kb on - strand, within IAI47_19895at 205.674 kb on - strand, within IAI47_19895at 205.674 kb on - strand, within IAI47_19895at 205.674 kb on - strand, within IAI47_19895at 205.748 kb on + strand, within IAI47_19895at 205.817 kb on + strand, within IAI47_19895at 205.817 kb on + strand, within IAI47_19895at 205.818 kb on - strand, within IAI47_19895at 205.818 kb on - strand, within IAI47_19895at 205.818 kb on - strand, within IAI47_19895at 205.859 kb on - strand, within IAI47_19895at 205.859 kb on - strand, within IAI47_19895at 205.862 kb on + strand, within IAI47_19895at 205.863 kb on - strand, within IAI47_19895at 205.957 kb on + strand, within IAI47_19895at 205.958 kb on - strand, within IAI47_19895at 205.958 kb on - strand, within IAI47_19895at 206.039 kb on + strandat 206.039 kb on + strandat 206.039 kb on + strandat 206.039 kb on + strandat 206.039 kb on + strandat 206.040 kb on - strandat 206.040 kb on - strandat 206.058 kb on + strandat 206.058 kb on + strandat 206.058 kb on + strandat 206.071 kb on + strandat 206.071 kb on + strandat 206.071 kb on + strandat 206.072 kb on - strandat 206.072 kb on - strandat 206.072 kb on - strandat 206.072 kb on - strandat 206.074 kb on + strandat 206.074 kb on + strandat 206.075 kb on - strandat 206.075 kb on - strandat 206.075 kb on - strandat 206.125 kb on - strandat 206.194 kb on + strand, within IAI47_19900at 206.194 kb on + strand, within IAI47_19900at 206.194 kb on + strand, within IAI47_19900at 206.194 kb on + strand, within IAI47_19900at 206.194 kb on + strand, within IAI47_19900at 206.194 kb on + strand, within IAI47_19900at 206.195 kb on - strand, within IAI47_19900at 206.195 kb on - strand, within IAI47_19900at 206.195 kb on - strand, within IAI47_19900at 206.198 kb on + strand, within IAI47_19900at 206.199 kb on - strand, within IAI47_19900at 206.199 kb on - strand, within IAI47_19900at 206.252 kb on + strand, within IAI47_19900at 206.330 kb on - strand, within IAI47_19900

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 40 uM, aerobic
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204,009 + IAI47_19885 0.32 -0.4
204,144 + IAI47_19885 0.41 -0.4
204,145 - IAI47_19885 0.41 +0.6
204,197 + IAI47_19885 0.45 -0.2
204,198 - IAI47_19885 0.45 +0.3
204,198 - IAI47_19885 0.45 +1.1
204,304 - IAI47_19885 0.52 -0.0
204,367 + IAI47_19885 0.56 -2.0
204,367 + IAI47_19885 0.56 -0.4
204,367 + IAI47_19885 0.56 -0.5
204,367 + IAI47_19885 0.56 -1.3
204,367 + IAI47_19885 0.56 +0.1
204,367 + IAI47_19885 0.56 +0.8
204,368 - IAI47_19885 0.57 +0.6
204,368 - IAI47_19885 0.57 +1.7
204,368 - IAI47_19885 0.57 +0.3
204,407 - IAI47_19885 0.59 +0.4
204,455 + IAI47_19885 0.63 -0.1
204,456 - IAI47_19885 0.63 +0.6
204,624 + IAI47_19885 0.74 -0.6
204,636 + IAI47_19885 0.75 +0.0
204,637 - IAI47_19885 0.75 +0.3
204,642 + IAI47_19885 0.75 +0.5
204,642 + IAI47_19885 0.75 -0.5
204,642 + IAI47_19885 0.75 -0.2
204,642 + IAI47_19885 0.75 -0.8
204,643 - IAI47_19885 0.75 +0.1
204,643 - IAI47_19885 0.75 +0.9
204,643 - IAI47_19885 0.75 +1.2
204,662 - IAI47_19885 0.77 +0.6
204,762 - IAI47_19885 0.84 +0.8
204,907 + -0.2
204,907 + -0.5
204,907 + +1.2
204,907 + +0.4
204,907 + +0.6
204,908 - -0.6
204,908 - +0.1
204,917 + +1.0
204,917 + +0.4
204,918 - +0.3
204,918 - -0.6
204,927 + +0.1
204,959 + -0.8
205,007 + -0.0
205,007 + +1.1
205,007 + +0.0
205,028 - -0.5
205,028 - +1.1
205,030 + +0.5
205,047 + IAI47_19890 0.11 -1.3
205,169 + IAI47_19890 0.36 -0.8
205,170 - IAI47_19890 0.36 -2.1
205,210 - IAI47_19890 0.44 -1.1
205,210 - IAI47_19890 0.44 +0.4
205,427 + IAI47_19890 0.89 -0.8
205,456 + +0.7
205,456 + +0.4
205,456 + -1.1
205,456 + -1.7
205,456 + -1.9
205,457 - -0.1
205,457 - +0.1
205,457 - +0.2
205,517 + -1.4
205,517 + +0.5
205,517 + +0.7
205,517 + -0.7
205,517 + -0.1
205,517 + +0.7
205,518 - -0.1
205,518 - +0.5
205,518 - +0.3
205,518 - +0.3
205,518 - +0.9
205,518 - +0.4
205,518 - -0.9
205,519 + -0.3
205,519 + +0.3
205,519 + -0.1
205,519 + +0.4
205,520 - +1.7
205,520 - -0.5
205,520 - -0.6
205,530 + +0.3
205,531 - +1.0
205,531 - -1.1
205,604 + IAI47_19895 0.23 +0.8
205,605 - IAI47_19895 0.23 +1.0
205,605 - IAI47_19895 0.23 -0.4
205,620 + IAI47_19895 0.26 -1.6
205,621 - IAI47_19895 0.26 -0.3
205,637 + IAI47_19895 0.29 -0.8
205,637 + IAI47_19895 0.29 -0.5
205,637 + IAI47_19895 0.29 -0.4
205,637 + IAI47_19895 0.29 +0.4
205,638 - IAI47_19895 0.29 +0.7
205,638 - IAI47_19895 0.29 -0.3
205,638 - IAI47_19895 0.29 -0.0
205,638 - IAI47_19895 0.29 +0.3
205,638 - IAI47_19895 0.29 +1.4
205,638 - IAI47_19895 0.29 +0.3
205,638 - IAI47_19895 0.29 +0.2
205,656 + IAI47_19895 0.32 -0.5
205,669 + IAI47_19895 0.34 -0.5
205,669 + IAI47_19895 0.34 +0.3
205,669 + IAI47_19895 0.34 -1.0
205,669 + IAI47_19895 0.34 +0.0
205,669 + IAI47_19895 0.34 -0.5
205,669 + IAI47_19895 0.34 -0.3
205,670 - IAI47_19895 0.34 -1.0
205,670 - IAI47_19895 0.34 +0.5
205,670 - IAI47_19895 0.34 +0.8
205,670 - IAI47_19895 0.34 +0.6
205,670 - IAI47_19895 0.34 -0.9
205,670 - IAI47_19895 0.34 -2.7
205,670 - IAI47_19895 0.34 +0.9
205,670 - IAI47_19895 0.34 +1.7
205,670 - IAI47_19895 0.34 -0.6
205,673 + IAI47_19895 0.35 -1.5
205,673 + IAI47_19895 0.35 -0.1
205,673 + IAI47_19895 0.35 +1.0
205,673 + IAI47_19895 0.35 -0.5
205,673 + IAI47_19895 0.35 -0.0
205,673 + IAI47_19895 0.35 -1.6
205,674 - IAI47_19895 0.35 -0.2
205,674 - IAI47_19895 0.35 -0.7
205,674 - IAI47_19895 0.35 +0.3
205,674 - IAI47_19895 0.35 +1.4
205,748 + IAI47_19895 0.48 -1.0
205,817 + IAI47_19895 0.60 +1.1
205,817 + IAI47_19895 0.60 -1.8
205,818 - IAI47_19895 0.60 -0.6
205,818 - IAI47_19895 0.60 +0.5
205,818 - IAI47_19895 0.60 -0.1
205,859 - IAI47_19895 0.68 -1.0
205,859 - IAI47_19895 0.68 +0.9
205,862 + IAI47_19895 0.68 -0.1
205,863 - IAI47_19895 0.68 +0.5
205,957 + IAI47_19895 0.85 +0.0
205,958 - IAI47_19895 0.85 +2.4
205,958 - IAI47_19895 0.85 +1.0
206,039 + -0.3
206,039 + -0.7
206,039 + -0.8
206,039 + +0.5
206,039 + -0.4
206,040 - +0.6
206,040 - -0.0
206,058 + -0.6
206,058 + -1.4
206,058 + -2.7
206,071 + +0.6
206,071 + -0.4
206,071 + -0.2
206,072 - -0.2
206,072 - +0.6
206,072 - -0.0
206,072 - -0.2
206,074 + +1.3
206,074 + -0.1
206,075 - -1.3
206,075 - +1.4
206,075 - +1.3
206,125 - -2.5
206,194 + IAI47_19900 0.19 +1.0
206,194 + IAI47_19900 0.19 -1.2
206,194 + IAI47_19900 0.19 -1.0
206,194 + IAI47_19900 0.19 +0.5
206,194 + IAI47_19900 0.19 -1.3
206,194 + IAI47_19900 0.19 -0.2
206,195 - IAI47_19900 0.19 -0.9
206,195 - IAI47_19900 0.19 +0.5
206,195 - IAI47_19900 0.19 +0.4
206,198 + IAI47_19900 0.20 -0.1
206,199 - IAI47_19900 0.20 +0.6
206,199 - IAI47_19900 0.20 -0.5
206,252 + IAI47_19900 0.27 -1.8
206,330 - IAI47_19900 0.37 -0.5

Or see this region's nucleotide sequence