Strain Fitness in Pantoea sp. MT58 around IAI47_06985

Experiment: Nickel (II) chloride 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06980 and IAI47_06985 are separated by 4 nucleotidesIAI47_06985 and IAI47_06990 overlap by 4 nucleotides IAI47_06980: IAI47_06980 - colanic acid biosynthesis pyruvyl transferase WcaK, at 1,470,838 to 1,472,100 _06980 IAI47_06985: IAI47_06985 - colanic acid biosynthesis glycosyltransferase WcaL, at 1,472,105 to 1,473,328 _06985 IAI47_06990: IAI47_06990 - lipopolysaccharide biosynthesis protein, at 1,473,325 to 1,474,665 _06990 Position (kb) 1472 1473 1474Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1471.228 kb on + strand, within IAI47_06980at 1471.229 kb on - strand, within IAI47_06980at 1471.235 kb on + strand, within IAI47_06980at 1471.235 kb on + strand, within IAI47_06980at 1471.285 kb on + strand, within IAI47_06980at 1471.428 kb on + strand, within IAI47_06980at 1471.463 kb on + strand, within IAI47_06980at 1471.530 kb on + strand, within IAI47_06980at 1471.550 kb on + strand, within IAI47_06980at 1471.690 kb on + strand, within IAI47_06980at 1471.848 kb on + strand, within IAI47_06980at 1471.985 kb on + strandat 1472.005 kb on + strandat 1472.090 kb on + strandat 1472.090 kb on + strandat 1472.093 kb on + strandat 1472.093 kb on + strandat 1472.093 kb on + strandat 1472.093 kb on + strandat 1472.098 kb on + strandat 1473.336 kb on + strandat 1473.336 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 40 uM, aerobic
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1,471,228 + IAI47_06980 0.31 +0.3
1,471,229 - IAI47_06980 0.31 -3.8
1,471,235 + IAI47_06980 0.31 -1.4
1,471,235 + IAI47_06980 0.31 -0.1
1,471,285 + IAI47_06980 0.35 +0.8
1,471,428 + IAI47_06980 0.47 -0.7
1,471,463 + IAI47_06980 0.49 -0.9
1,471,530 + IAI47_06980 0.55 -1.7
1,471,550 + IAI47_06980 0.56 -1.4
1,471,690 + IAI47_06980 0.67 -0.1
1,471,848 + IAI47_06980 0.80 -1.9
1,471,985 + -2.8
1,472,005 + -0.2
1,472,090 + -0.0
1,472,090 + +0.5
1,472,093 + +0.7
1,472,093 + -0.1
1,472,093 + +0.8
1,472,093 + +0.5
1,472,098 + +0.8
1,473,336 + -1.9
1,473,336 + -1.7

Or see this region's nucleotide sequence