Experiment: Nickel (II) chloride 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00450 and IAI47_00455 are separated by 7 nucleotides IAI47_00455 and IAI47_00460 are separated by 138 nucleotides
IAI47_00450: IAI47_00450 - nitrogen regulation protein NR(I), at 100,498 to 101,907
_00450
IAI47_00455: IAI47_00455 - nitrogen regulation protein NR(II), at 101,915 to 102,964
_00455
IAI47_00460: IAI47_00460 - glutamate--ammonia ligase, at 103,103 to 104,512
_00460
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 100.937 kb on + strand, within IAI47_00450 at 100.938 kb on - strand, within IAI47_00450 at 100.957 kb on - strand, within IAI47_00450 at 101.079 kb on + strand at 101.079 kb on + strand, within IAI47_00450 at 101.080 kb on - strand, within IAI47_00450 at 101.080 kb on - strand, within IAI47_00450 at 101.080 kb on - strand, within IAI47_00450 at 101.080 kb on - strand, within IAI47_00450 at 101.082 kb on + strand, within IAI47_00450 at 101.082 kb on + strand, within IAI47_00450 at 101.082 kb on + strand, within IAI47_00450 at 101.082 kb on + strand, within IAI47_00450 at 101.082 kb on + strand, within IAI47_00450 at 101.082 kb on + strand, within IAI47_00450 at 101.082 kb on + strand, within IAI47_00450 at 101.082 kb on + strand, within IAI47_00450 at 101.083 kb on - strand, within IAI47_00450 at 101.083 kb on - strand, within IAI47_00450 at 101.083 kb on - strand, within IAI47_00450 at 101.108 kb on + strand, within IAI47_00450 at 101.109 kb on - strand, within IAI47_00450 at 101.109 kb on - strand, within IAI47_00450 at 101.123 kb on + strand, within IAI47_00450 at 101.178 kb on + strand, within IAI47_00450 at 101.178 kb on + strand, within IAI47_00450 at 101.179 kb on - strand, within IAI47_00450 at 101.179 kb on - strand, within IAI47_00450 at 101.179 kb on - strand, within IAI47_00450 at 101.179 kb on - strand, within IAI47_00450 at 101.179 kb on - strand, within IAI47_00450 at 101.179 kb on - strand, within IAI47_00450 at 101.179 kb on - strand, within IAI47_00450 at 101.308 kb on + strand, within IAI47_00450 at 101.309 kb on - strand, within IAI47_00450 at 101.309 kb on - strand, within IAI47_00450 at 101.365 kb on + strand, within IAI47_00450 at 101.365 kb on + strand, within IAI47_00450 at 101.365 kb on + strand, within IAI47_00450 at 101.365 kb on + strand, within IAI47_00450 at 101.366 kb on - strand, within IAI47_00450 at 101.366 kb on - strand, within IAI47_00450 at 101.366 kb on - strand, within IAI47_00450 at 101.366 kb on - strand, within IAI47_00450 at 101.408 kb on + strand, within IAI47_00450 at 101.409 kb on + strand, within IAI47_00450 at 101.422 kb on + strand, within IAI47_00450 at 101.451 kb on + strand, within IAI47_00450 at 101.451 kb on + strand, within IAI47_00450 at 101.451 kb on + strand, within IAI47_00450 at 101.452 kb on - strand, within IAI47_00450 at 101.452 kb on - strand, within IAI47_00450 at 101.452 kb on - strand, within IAI47_00450 at 101.487 kb on + strand, within IAI47_00450 at 101.487 kb on + strand, within IAI47_00450 at 101.487 kb on + strand, within IAI47_00450 at 101.487 kb on + strand, within IAI47_00450 at 101.488 kb on - strand, within IAI47_00450 at 101.488 kb on - strand, within IAI47_00450 at 101.488 kb on - strand, within IAI47_00450 at 101.491 kb on - strand, within IAI47_00450 at 101.491 kb on - strand, within IAI47_00450 at 101.496 kb on + strand, within IAI47_00450 at 101.496 kb on + strand, within IAI47_00450 at 101.497 kb on - strand, within IAI47_00450 at 101.497 kb on - strand, within IAI47_00450 at 101.497 kb on - strand, within IAI47_00450 at 101.520 kb on + strand, within IAI47_00450 at 101.520 kb on + strand, within IAI47_00450 at 101.521 kb on - strand, within IAI47_00450 at 101.564 kb on - strand, within IAI47_00450 at 101.606 kb on + strand, within IAI47_00450 at 101.606 kb on + strand, within IAI47_00450 at 101.607 kb on - strand, within IAI47_00450 at 101.627 kb on + strand, within IAI47_00450 at 101.668 kb on + strand, within IAI47_00450 at 101.668 kb on + strand, within IAI47_00450 at 101.669 kb on - strand, within IAI47_00450 at 101.669 kb on - strand, within IAI47_00450 at 101.669 kb on - strand, within IAI47_00450 at 101.700 kb on + strand, within IAI47_00450 at 101.701 kb on - strand, within IAI47_00450 at 101.714 kb on - strand, within IAI47_00450 at 101.755 kb on + strand, within IAI47_00450 at 101.755 kb on + strand, within IAI47_00450 at 101.756 kb on - strand, within IAI47_00450 at 101.871 kb on + strand at 101.871 kb on + strand at 101.872 kb on - strand at 101.872 kb on - strand at 101.872 kb on - strand at 101.894 kb on - strand at 101.907 kb on + strand at 101.907 kb on + strand at 101.908 kb on - strand at 101.908 kb on - strand at 101.908 kb on - strand at 101.908 kb on - strand at 101.908 kb on - strand at 101.908 kb on - strand at 101.926 kb on + strand at 101.927 kb on - strand at 101.927 kb on - strand at 101.935 kb on - strand at 101.935 kb on - strand at 101.968 kb on + strand at 101.968 kb on + strand at 101.969 kb on - strand at 101.969 kb on - strand at 102.023 kb on + strand, within IAI47_00455 at 102.024 kb on - strand, within IAI47_00455 at 102.070 kb on + strand, within IAI47_00455 at 102.071 kb on - strand, within IAI47_00455 at 102.071 kb on - strand, within IAI47_00455 at 102.118 kb on + strand, within IAI47_00455 at 102.118 kb on + strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.125 kb on + strand, within IAI47_00455 at 102.125 kb on + strand, within IAI47_00455 at 102.235 kb on + strand, within IAI47_00455 at 102.242 kb on + strand, within IAI47_00455 at 102.242 kb on + strand, within IAI47_00455 at 102.242 kb on + strand, within IAI47_00455 at 102.294 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.347 kb on + strand, within IAI47_00455 at 102.347 kb on + strand, within IAI47_00455 at 102.347 kb on + strand, within IAI47_00455 at 102.407 kb on + strand, within IAI47_00455 at 102.451 kb on + strand, within IAI47_00455 at 102.451 kb on + strand, within IAI47_00455 at 102.465 kb on + strand, within IAI47_00455 at 102.466 kb on - strand, within IAI47_00455 at 102.466 kb on - strand, within IAI47_00455 at 102.466 kb on - strand, within IAI47_00455 at 102.501 kb on - strand, within IAI47_00455 at 102.541 kb on + strand, within IAI47_00455 at 102.541 kb on + strand, within IAI47_00455 at 102.541 kb on + strand, within IAI47_00455 at 102.599 kb on + strand, within IAI47_00455 at 102.599 kb on + strand, within IAI47_00455 at 102.599 kb on + strand, within IAI47_00455 at 102.628 kb on + strand, within IAI47_00455 at 102.629 kb on - strand, within IAI47_00455 at 102.656 kb on + strand, within IAI47_00455 at 102.656 kb on + strand, within IAI47_00455 at 102.657 kb on - strand, within IAI47_00455 at 102.657 kb on - strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.721 kb on + strand, within IAI47_00455 at 102.721 kb on + strand, within IAI47_00455 at 102.722 kb on - strand, within IAI47_00455 at 102.778 kb on + strand, within IAI47_00455 at 102.778 kb on + strand, within IAI47_00455 at 102.779 kb on - strand, within IAI47_00455 at 102.779 kb on - strand, within IAI47_00455 at 102.800 kb on + strand, within IAI47_00455 at 102.801 kb on - strand, within IAI47_00455 at 102.848 kb on + strand, within IAI47_00455 at 102.874 kb on - strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.908 kb on - strand at 102.908 kb on - strand at 102.917 kb on + strand at 102.917 kb on + strand at 102.917 kb on + strand at 102.918 kb on - strand at 102.964 kb on + strand at 102.964 kb on + strand at 102.965 kb on - strand at 102.971 kb on + strand at 102.971 kb on + strand at 102.972 kb on - strand at 102.997 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.031 kb on + strand at 103.032 kb on - strand at 103.069 kb on - strand at 103.104 kb on + strand at 103.104 kb on + strand at 103.510 kb on - strand, within IAI47_00460 at 103.651 kb on - strand, within IAI47_00460 at 103.697 kb on - strand, within IAI47_00460 at 103.745 kb on - strand, within IAI47_00460 at 103.798 kb on - strand, within IAI47_00460
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 40 uM, aerobic remove 100,937 + IAI47_00450 0.31 -3.6 100,938 - IAI47_00450 0.31 -3.8 100,957 - IAI47_00450 0.33 -2.3 101,079 + +3.1 101,079 + IAI47_00450 0.41 -2.8 101,080 - IAI47_00450 0.41 -4.3 101,080 - IAI47_00450 0.41 -2.5 101,080 - IAI47_00450 0.41 -1.6 101,080 - IAI47_00450 0.41 -3.2 101,082 + IAI47_00450 0.41 -3.2 101,082 + IAI47_00450 0.41 -1.6 101,082 + IAI47_00450 0.41 -3.1 101,082 + IAI47_00450 0.41 -1.4 101,082 + IAI47_00450 0.41 -2.3 101,082 + IAI47_00450 0.41 -1.7 101,082 + IAI47_00450 0.41 +0.5 101,082 + IAI47_00450 0.41 -0.4 101,083 - IAI47_00450 0.41 -1.9 101,083 - IAI47_00450 0.41 -2.8 101,083 - IAI47_00450 0.41 -1.4 101,108 + IAI47_00450 0.43 -0.9 101,109 - IAI47_00450 0.43 -1.9 101,109 - IAI47_00450 0.43 -1.5 101,123 + IAI47_00450 0.44 -2.8 101,178 + IAI47_00450 0.48 -2.8 101,178 + IAI47_00450 0.48 -1.9 101,179 - IAI47_00450 0.48 -2.6 101,179 - IAI47_00450 0.48 -4.2 101,179 - IAI47_00450 0.48 -2.1 101,179 - IAI47_00450 0.48 -0.6 101,179 - IAI47_00450 0.48 -1.1 101,179 - IAI47_00450 0.48 -3.6 101,179 - IAI47_00450 0.48 -1.2 101,308 + IAI47_00450 0.57 -2.9 101,309 - IAI47_00450 0.58 -0.6 101,309 - IAI47_00450 0.58 -0.1 101,365 + IAI47_00450 0.61 -1.7 101,365 + IAI47_00450 0.61 +2.1 101,365 + IAI47_00450 0.61 -1.8 101,365 + IAI47_00450 0.61 -2.8 101,366 - IAI47_00450 0.62 -3.5 101,366 - IAI47_00450 0.62 -3.9 101,366 - IAI47_00450 0.62 -1.1 101,366 - IAI47_00450 0.62 -0.5 101,408 + IAI47_00450 0.65 -1.4 101,409 + IAI47_00450 0.65 -3.1 101,422 + IAI47_00450 0.66 -1.8 101,451 + IAI47_00450 0.68 -1.2 101,451 + IAI47_00450 0.68 -1.8 101,451 + IAI47_00450 0.68 -1.6 101,452 - IAI47_00450 0.68 -2.4 101,452 - IAI47_00450 0.68 -1.1 101,452 - IAI47_00450 0.68 -4.5 101,487 + IAI47_00450 0.70 -2.6 101,487 + IAI47_00450 0.70 -4.3 101,487 + IAI47_00450 0.70 -1.1 101,487 + IAI47_00450 0.70 -0.5 101,488 - IAI47_00450 0.70 -1.5 101,488 - IAI47_00450 0.70 -1.8 101,488 - IAI47_00450 0.70 -2.0 101,491 - IAI47_00450 0.70 -2.0 101,491 - IAI47_00450 0.70 -2.7 101,496 + IAI47_00450 0.71 -4.7 101,496 + IAI47_00450 0.71 -1.5 101,497 - IAI47_00450 0.71 -2.4 101,497 - IAI47_00450 0.71 -2.3 101,497 - IAI47_00450 0.71 -0.9 101,520 + IAI47_00450 0.72 -2.5 101,520 + IAI47_00450 0.72 -2.5 101,521 - IAI47_00450 0.73 -3.0 101,564 - IAI47_00450 0.76 -2.9 101,606 + IAI47_00450 0.79 -2.5 101,606 + IAI47_00450 0.79 -3.1 101,607 - IAI47_00450 0.79 -3.1 101,627 + IAI47_00450 0.80 -3.4 101,668 + IAI47_00450 0.83 -2.4 101,668 + IAI47_00450 0.83 -2.3 101,669 - IAI47_00450 0.83 -0.1 101,669 - IAI47_00450 0.83 -0.9 101,669 - IAI47_00450 0.83 -2.7 101,700 + IAI47_00450 0.85 -2.0 101,701 - IAI47_00450 0.85 -0.4 101,714 - IAI47_00450 0.86 -1.8 101,755 + IAI47_00450 0.89 -1.0 101,755 + IAI47_00450 0.89 -3.1 101,756 - IAI47_00450 0.89 -0.7 101,871 + -2.4 101,871 + -3.0 101,872 - -4.0 101,872 - -2.7 101,872 - -1.1 101,894 - -3.9 101,907 + -2.2 101,907 + -2.5 101,908 - -1.9 101,908 - +0.3 101,908 - +0.2 101,908 - -1.4 101,908 - -0.4 101,908 - -0.5 101,926 + -1.5 101,927 - -0.6 101,927 - -2.4 101,935 - -1.7 101,935 - -2.7 101,968 + -2.7 101,968 + -3.2 101,969 - -0.9 101,969 - -1.9 102,023 + IAI47_00455 0.10 -2.3 102,024 - IAI47_00455 0.10 -1.9 102,070 + IAI47_00455 0.15 -0.6 102,071 - IAI47_00455 0.15 -1.3 102,071 - IAI47_00455 0.15 -1.6 102,118 + IAI47_00455 0.19 -1.9 102,118 + IAI47_00455 0.19 -1.8 102,119 - IAI47_00455 0.19 -1.9 102,119 - IAI47_00455 0.19 -1.3 102,119 - IAI47_00455 0.19 -2.3 102,119 - IAI47_00455 0.19 -2.3 102,119 - IAI47_00455 0.19 -2.7 102,125 + IAI47_00455 0.20 -2.4 102,125 + IAI47_00455 0.20 -2.8 102,235 + IAI47_00455 0.30 +0.1 102,242 + IAI47_00455 0.31 -2.0 102,242 + IAI47_00455 0.31 -1.5 102,242 + IAI47_00455 0.31 -2.1 102,294 + IAI47_00455 0.36 -0.3 102,343 + IAI47_00455 0.41 -1.6 102,343 + IAI47_00455 0.41 -2.2 102,343 + IAI47_00455 0.41 -0.8 102,343 + IAI47_00455 0.41 -3.5 102,343 + IAI47_00455 0.41 -1.9 102,347 + IAI47_00455 0.41 -1.2 102,347 + IAI47_00455 0.41 -2.9 102,347 + IAI47_00455 0.41 -1.2 102,407 + IAI47_00455 0.47 -2.6 102,451 + IAI47_00455 0.51 -0.9 102,451 + IAI47_00455 0.51 -2.4 102,465 + IAI47_00455 0.52 -2.2 102,466 - IAI47_00455 0.52 -1.3 102,466 - IAI47_00455 0.52 -0.8 102,466 - IAI47_00455 0.52 -1.4 102,501 - IAI47_00455 0.56 -2.3 102,541 + IAI47_00455 0.60 -1.3 102,541 + IAI47_00455 0.60 -0.5 102,541 + IAI47_00455 0.60 -2.5 102,599 + IAI47_00455 0.65 -3.2 102,599 + IAI47_00455 0.65 -1.6 102,599 + IAI47_00455 0.65 -2.9 102,628 + IAI47_00455 0.68 -0.9 102,629 - IAI47_00455 0.68 -2.2 102,656 + IAI47_00455 0.71 -1.5 102,656 + IAI47_00455 0.71 -1.6 102,657 - IAI47_00455 0.71 -3.2 102,657 - IAI47_00455 0.71 -1.3 102,691 + IAI47_00455 0.74 -2.3 102,691 + IAI47_00455 0.74 -2.0 102,691 + IAI47_00455 0.74 -2.1 102,691 + IAI47_00455 0.74 -3.4 102,691 + IAI47_00455 0.74 -1.8 102,691 + IAI47_00455 0.74 +0.2 102,691 + IAI47_00455 0.74 -2.3 102,691 + IAI47_00455 0.74 -1.9 102,691 + IAI47_00455 0.74 -2.0 102,692 - IAI47_00455 0.74 -2.4 102,692 - IAI47_00455 0.74 -1.4 102,692 - IAI47_00455 0.74 -0.1 102,692 - IAI47_00455 0.74 -3.7 102,692 - IAI47_00455 0.74 -2.3 102,692 - IAI47_00455 0.74 -2.2 102,721 + IAI47_00455 0.77 -2.7 102,721 + IAI47_00455 0.77 -1.3 102,722 - IAI47_00455 0.77 -2.2 102,778 + IAI47_00455 0.82 +1.5 102,778 + IAI47_00455 0.82 -2.3 102,779 - IAI47_00455 0.82 -2.9 102,779 - IAI47_00455 0.82 -0.5 102,800 + IAI47_00455 0.84 -2.7 102,801 - IAI47_00455 0.84 -1.8 102,848 + IAI47_00455 0.89 -2.5 102,874 - -1.2 102,907 + -1.9 102,907 + -1.1 102,907 + -3.1 102,907 + -3.9 102,907 + -2.5 102,908 - -1.3 102,908 - -0.9 102,917 + -1.4 102,917 + -1.3 102,917 + -1.8 102,918 - -1.2 102,964 + -1.4 102,964 + -1.6 102,965 - +0.4 102,971 + -0.5 102,971 + -1.1 102,972 - -0.5 102,997 + -0.4 103,003 + +0.3 103,003 + +0.2 103,003 + -1.3 103,003 + +0.3 103,003 + +0.1 103,003 + -0.3 103,003 + -0.1 103,031 + -0.3 103,032 - +0.4 103,069 - -0.1 103,104 + -2.6 103,104 + -1.3 103,510 - IAI47_00460 0.29 +1.1 103,651 - IAI47_00460 0.39 +0.7 103,697 - IAI47_00460 0.42 +0.7 103,745 - IAI47_00460 0.46 +0.2 103,798 - IAI47_00460 0.49 -1.0
Or see this region's nucleotide sequence