Strain Fitness in Rahnella sp. WP5 around EX31_RS18380

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18365 and EX31_RS18370 are separated by 2 nucleotidesEX31_RS18370 and EX31_RS18375 overlap by 1 nucleotidesEX31_RS18375 and EX31_RS18380 are separated by 95 nucleotidesEX31_RS18380 and EX31_RS18385 are separated by 2 nucleotides EX31_RS18360: EX31_RS18360 - lysozyme, at 243,824 to 244,333 _RS18360 EX31_RS18365: EX31_RS18365 - hypothetical protein, at 244,317 to 244,526 _RS18365 EX31_RS18370: EX31_RS18370 - tail protein X, at 244,529 to 244,732 _RS18370 EX31_RS18375: EX31_RS18375 - head completion/stabilization protein, at 244,732 to 245,226 _RS18375 EX31_RS18380: EX31_RS18380 - terminase, at 245,322 to 246,068 _RS18380 EX31_RS18385: EX31_RS18385 - phage major capsid protein, P2 family, at 246,071 to 247,171 _RS18385 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1 2at 244.375 kb on + strand, within EX31_RS18365at 244.515 kb on + strandat 244.516 kb on - strandat 244.539 kb on - strandat 244.644 kb on - strand, within EX31_RS18370at 244.677 kb on + strand, within EX31_RS18370at 244.677 kb on + strand, within EX31_RS18370at 244.678 kb on - strand, within EX31_RS18370at 244.810 kb on + strand, within EX31_RS18375at 244.810 kb on + strand, within EX31_RS18375at 244.862 kb on + strand, within EX31_RS18375at 244.862 kb on + strand, within EX31_RS18375at 244.863 kb on - strand, within EX31_RS18375at 244.863 kb on - strand, within EX31_RS18375at 244.863 kb on - strand, within EX31_RS18375at 244.881 kb on - strand, within EX31_RS18375at 244.980 kb on + strand, within EX31_RS18375at 245.015 kb on + strand, within EX31_RS18375at 245.015 kb on + strand, within EX31_RS18375at 245.015 kb on + strand, within EX31_RS18375at 245.016 kb on - strand, within EX31_RS18375at 245.016 kb on - strand, within EX31_RS18375at 245.049 kb on + strand, within EX31_RS18375at 245.049 kb on + strand, within EX31_RS18375at 245.049 kb on + strand, within EX31_RS18375at 245.050 kb on - strand, within EX31_RS18375at 245.080 kb on + strand, within EX31_RS18375at 245.080 kb on + strand, within EX31_RS18375at 245.080 kb on + strand, within EX31_RS18375at 245.080 kb on + strand, within EX31_RS18375at 245.081 kb on - strand, within EX31_RS18375at 245.081 kb on - strand, within EX31_RS18375at 245.097 kb on + strand, within EX31_RS18375at 245.098 kb on - strand, within EX31_RS18375at 245.142 kb on + strand, within EX31_RS18375at 245.142 kb on + strand, within EX31_RS18375at 245.143 kb on - strand, within EX31_RS18375at 245.185 kb on + strandat 245.221 kb on - strandat 245.241 kb on + strandat 245.241 kb on + strandat 245.241 kb on + strandat 245.242 kb on - strandat 245.242 kb on - strandat 245.242 kb on - strandat 245.324 kb on - strandat 245.375 kb on + strandat 245.375 kb on + strandat 245.376 kb on - strandat 245.376 kb on - strandat 245.451 kb on + strand, within EX31_RS18380at 245.452 kb on - strand, within EX31_RS18380at 245.452 kb on - strand, within EX31_RS18380at 245.452 kb on - strand, within EX31_RS18380at 245.452 kb on - strand, within EX31_RS18380at 245.452 kb on - strand, within EX31_RS18380at 245.452 kb on - strand, within EX31_RS18380at 245.452 kb on - strand, within EX31_RS18380at 245.452 kb on - strand, within EX31_RS18380at 245.452 kb on - strand, within EX31_RS18380at 245.452 kb on - strand, within EX31_RS18380at 245.499 kb on + strand, within EX31_RS18380at 245.499 kb on + strand, within EX31_RS18380at 245.499 kb on + strand, within EX31_RS18380at 245.507 kb on + strand, within EX31_RS18380at 245.507 kb on + strand, within EX31_RS18380at 245.553 kb on - strand, within EX31_RS18380at 245.606 kb on + strand, within EX31_RS18380at 245.622 kb on + strand, within EX31_RS18380at 245.622 kb on + strand, within EX31_RS18380at 245.622 kb on + strand, within EX31_RS18380at 245.622 kb on + strand, within EX31_RS18380at 245.695 kb on - strand, within EX31_RS18380at 245.695 kb on - strand, within EX31_RS18380at 245.698 kb on + strand, within EX31_RS18380at 245.699 kb on - strand, within EX31_RS18380at 245.699 kb on - strand, within EX31_RS18380at 245.699 kb on - strand, within EX31_RS18380at 245.743 kb on - strand, within EX31_RS18380at 245.749 kb on + strand, within EX31_RS18380at 245.750 kb on - strand, within EX31_RS18380at 245.873 kb on - strand, within EX31_RS18380at 245.894 kb on + strand, within EX31_RS18380at 245.895 kb on - strand, within EX31_RS18380at 245.934 kb on + strand, within EX31_RS18380at 245.935 kb on - strand, within EX31_RS18380at 245.935 kb on - strand, within EX31_RS18380at 246.072 kb on + strandat 246.180 kb on + strandat 246.181 kb on - strand, within EX31_RS18385at 246.216 kb on + strand, within EX31_RS18385at 246.217 kb on - strand, within EX31_RS18385at 246.217 kb on - strand, within EX31_RS18385at 246.217 kb on - strand, within EX31_RS18385at 246.243 kb on - strand, within EX31_RS18385at 246.243 kb on - strand, within EX31_RS18385at 246.282 kb on + strand, within EX31_RS18385at 246.282 kb on + strand, within EX31_RS18385at 246.282 kb on + strand, within EX31_RS18385at 246.282 kb on + strand, within EX31_RS18385at 246.282 kb on + strand, within EX31_RS18385at 246.283 kb on - strand, within EX31_RS18385at 246.283 kb on - strand, within EX31_RS18385at 246.283 kb on - strand, within EX31_RS18385at 246.286 kb on + strand, within EX31_RS18385at 246.287 kb on - strand, within EX31_RS18385at 246.287 kb on - strand, within EX31_RS18385at 246.287 kb on - strand, within EX31_RS18385at 246.333 kb on + strand, within EX31_RS18385at 246.333 kb on + strand, within EX31_RS18385at 246.334 kb on - strand, within EX31_RS18385at 246.439 kb on - strand, within EX31_RS18385at 246.439 kb on - strand, within EX31_RS18385at 246.439 kb on - strand, within EX31_RS18385at 246.439 kb on - strand, within EX31_RS18385at 246.439 kb on - strand, within EX31_RS18385at 246.439 kb on - strand, within EX31_RS18385at 246.473 kb on + strand, within EX31_RS18385at 246.695 kb on - strand, within EX31_RS18385at 246.723 kb on - strand, within EX31_RS18385at 246.723 kb on - strand, within EX31_RS18385at 246.747 kb on + strand, within EX31_RS18385at 246.747 kb on + strand, within EX31_RS18385at 246.748 kb on - strand, within EX31_RS18385at 246.748 kb on - strand, within EX31_RS18385at 246.748 kb on - strand, within EX31_RS18385at 246.831 kb on + strand, within EX31_RS18385at 246.832 kb on - strand, within EX31_RS18385at 246.868 kb on + strand, within EX31_RS18385at 246.869 kb on - strand, within EX31_RS18385at 246.869 kb on - strand, within EX31_RS18385at 246.869 kb on - strand, within EX31_RS18385at 246.869 kb on - strand, within EX31_RS18385at 246.869 kb on - strand, within EX31_RS18385at 246.870 kb on + strand, within EX31_RS18385at 247.048 kb on + strand, within EX31_RS18385

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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244,375 + EX31_RS18365 0.28 -0.7
244,515 + +0.1
244,516 - +0.4
244,539 - +0.5
244,644 - EX31_RS18370 0.56 -1.3
244,677 + EX31_RS18370 0.73 +0.8
244,677 + EX31_RS18370 0.73 +1.3
244,678 - EX31_RS18370 0.73 -0.4
244,810 + EX31_RS18375 0.16 +1.8
244,810 + EX31_RS18375 0.16 -0.3
244,862 + EX31_RS18375 0.26 +1.5
244,862 + EX31_RS18375 0.26 +2.5
244,863 - EX31_RS18375 0.26 -0.4
244,863 - EX31_RS18375 0.26 -0.1
244,863 - EX31_RS18375 0.26 -2.3
244,881 - EX31_RS18375 0.30 -0.5
244,980 + EX31_RS18375 0.50 +0.2
245,015 + EX31_RS18375 0.57 -1.0
245,015 + EX31_RS18375 0.57 +0.8
245,015 + EX31_RS18375 0.57 +1.5
245,016 - EX31_RS18375 0.57 -0.7
245,016 - EX31_RS18375 0.57 +0.1
245,049 + EX31_RS18375 0.64 -1.5
245,049 + EX31_RS18375 0.64 +1.0
245,049 + EX31_RS18375 0.64 +0.2
245,050 - EX31_RS18375 0.64 -0.3
245,080 + EX31_RS18375 0.70 -1.2
245,080 + EX31_RS18375 0.70 -0.6
245,080 + EX31_RS18375 0.70 +0.7
245,080 + EX31_RS18375 0.70 -1.5
245,081 - EX31_RS18375 0.71 -0.2
245,081 - EX31_RS18375 0.71 -0.6
245,097 + EX31_RS18375 0.74 +1.7
245,098 - EX31_RS18375 0.74 -1.6
245,142 + EX31_RS18375 0.83 +0.1
245,142 + EX31_RS18375 0.83 +0.8
245,143 - EX31_RS18375 0.83 +2.3
245,185 + -1.6
245,221 - -0.6
245,241 + -0.3
245,241 + +1.5
245,241 + -0.5
245,242 - -0.2
245,242 - -0.7
245,242 - -1.1
245,324 - -0.3
245,375 + -0.5
245,375 + +0.6
245,376 - +0.7
245,376 - -0.4
245,451 + EX31_RS18380 0.17 +0.3
245,452 - EX31_RS18380 0.17 +1.4
245,452 - EX31_RS18380 0.17 +0.3
245,452 - EX31_RS18380 0.17 +0.0
245,452 - EX31_RS18380 0.17 -1.1
245,452 - EX31_RS18380 0.17 +0.4
245,452 - EX31_RS18380 0.17 +0.4
245,452 - EX31_RS18380 0.17 +0.5
245,452 - EX31_RS18380 0.17 +1.5
245,452 - EX31_RS18380 0.17 -1.3
245,452 - EX31_RS18380 0.17 +0.2
245,499 + EX31_RS18380 0.24 +0.2
245,499 + EX31_RS18380 0.24 +0.8
245,499 + EX31_RS18380 0.24 -0.8
245,507 + EX31_RS18380 0.25 -0.4
245,507 + EX31_RS18380 0.25 -0.2
245,553 - EX31_RS18380 0.31 -0.3
245,606 + EX31_RS18380 0.38 +1.1
245,622 + EX31_RS18380 0.40 -0.1
245,622 + EX31_RS18380 0.40 +0.3
245,622 + EX31_RS18380 0.40 -1.0
245,622 + EX31_RS18380 0.40 -0.5
245,695 - EX31_RS18380 0.50 -0.1
245,695 - EX31_RS18380 0.50 -0.9
245,698 + EX31_RS18380 0.50 -1.3
245,699 - EX31_RS18380 0.50 -0.2
245,699 - EX31_RS18380 0.50 +0.0
245,699 - EX31_RS18380 0.50 -1.3
245,743 - EX31_RS18380 0.56 +0.7
245,749 + EX31_RS18380 0.57 -0.6
245,750 - EX31_RS18380 0.57 -2.3
245,873 - EX31_RS18380 0.74 +0.4
245,894 + EX31_RS18380 0.77 -0.4
245,895 - EX31_RS18380 0.77 -1.4
245,934 + EX31_RS18380 0.82 -0.4
245,935 - EX31_RS18380 0.82 +0.6
245,935 - EX31_RS18380 0.82 +1.0
246,072 + -0.4
246,180 + -0.1
246,181 - EX31_RS18385 0.10 +2.2
246,216 + EX31_RS18385 0.13 -0.6
246,217 - EX31_RS18385 0.13 -0.2
246,217 - EX31_RS18385 0.13 +0.1
246,217 - EX31_RS18385 0.13 +0.6
246,243 - EX31_RS18385 0.16 -0.5
246,243 - EX31_RS18385 0.16 -0.4
246,282 + EX31_RS18385 0.19 -0.8
246,282 + EX31_RS18385 0.19 -0.7
246,282 + EX31_RS18385 0.19 +0.6
246,282 + EX31_RS18385 0.19 +0.1
246,282 + EX31_RS18385 0.19 -0.2
246,283 - EX31_RS18385 0.19 +0.6
246,283 - EX31_RS18385 0.19 +1.8
246,283 - EX31_RS18385 0.19 -0.2
246,286 + EX31_RS18385 0.20 +0.9
246,287 - EX31_RS18385 0.20 +1.0
246,287 - EX31_RS18385 0.20 +1.8
246,287 - EX31_RS18385 0.20 -0.5
246,333 + EX31_RS18385 0.24 +0.7
246,333 + EX31_RS18385 0.24 -1.6
246,334 - EX31_RS18385 0.24 +1.2
246,439 - EX31_RS18385 0.33 -1.4
246,439 - EX31_RS18385 0.33 -0.6
246,439 - EX31_RS18385 0.33 -1.0
246,439 - EX31_RS18385 0.33 +0.5
246,439 - EX31_RS18385 0.33 +0.8
246,439 - EX31_RS18385 0.33 +0.0
246,473 + EX31_RS18385 0.37 -0.3
246,695 - EX31_RS18385 0.57 -0.2
246,723 - EX31_RS18385 0.59 +0.3
246,723 - EX31_RS18385 0.59 +0.6
246,747 + EX31_RS18385 0.61 -2.0
246,747 + EX31_RS18385 0.61 +1.0
246,748 - EX31_RS18385 0.61 +1.1
246,748 - EX31_RS18385 0.61 +0.8
246,748 - EX31_RS18385 0.61 -0.0
246,831 + EX31_RS18385 0.69 +0.7
246,832 - EX31_RS18385 0.69 +0.4
246,868 + EX31_RS18385 0.72 -0.5
246,869 - EX31_RS18385 0.72 +0.3
246,869 - EX31_RS18385 0.72 -0.7
246,869 - EX31_RS18385 0.72 +0.0
246,869 - EX31_RS18385 0.72 +0.8
246,869 - EX31_RS18385 0.72 +0.3
246,870 + EX31_RS18385 0.73 +0.8
247,048 + EX31_RS18385 0.89 -1.4

Or see this region's nucleotide sequence