Experiment: Ammonium chloride (N); RCH2 media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17560 and EX31_RS17565 are separated by 573 nucleotides EX31_RS17565 and EX31_RS17570 are separated by 213 nucleotides
EX31_RS17560: EX31_RS17560 - FadR family transcriptional regulator, at 65,155 to 65,928
_RS17560
EX31_RS17565: EX31_RS17565 - GGDEF domain-containing protein, at 66,502 to 67,416
_RS17565
EX31_RS17570: EX31_RS17570 - extracellular solute-binding protein, at 67,630 to 68,667
_RS17570
Position (kb) 66
67
68 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 65.656 kb on + strand, within EX31_RS17560 at 65.683 kb on - strand, within EX31_RS17560 at 65.733 kb on + strand, within EX31_RS17560 at 65.733 kb on + strand, within EX31_RS17560 at 65.737 kb on + strand, within EX31_RS17560 at 65.738 kb on - strand, within EX31_RS17560 at 65.738 kb on - strand, within EX31_RS17560 at 65.957 kb on + strand at 65.957 kb on + strand at 65.957 kb on + strand at 65.957 kb on + strand at 65.957 kb on + strand at 65.957 kb on + strand at 65.957 kb on + strand at 65.958 kb on - strand at 65.958 kb on - strand at 65.958 kb on - strand at 65.958 kb on - strand at 65.981 kb on + strand at 65.982 kb on - strand at 65.982 kb on - strand at 65.982 kb on - strand at 65.982 kb on - strand at 66.060 kb on + strand at 66.073 kb on + strand at 66.083 kb on + strand at 66.083 kb on + strand at 66.083 kb on + strand at 66.103 kb on + strand at 66.118 kb on + strand at 66.118 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.120 kb on + strand at 66.121 kb on - strand at 66.121 kb on - strand at 66.121 kb on - strand at 66.121 kb on - strand at 66.121 kb on - strand at 66.121 kb on - strand at 66.135 kb on - strand at 66.201 kb on + strand at 66.251 kb on - strand at 66.259 kb on - strand at 66.325 kb on + strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.437 kb on - strand at 66.477 kb on + strand at 66.478 kb on - strand at 66.481 kb on + strand at 66.481 kb on + strand at 66.482 kb on - strand at 66.482 kb on - strand at 66.482 kb on - strand at 66.497 kb on + strand at 66.497 kb on + strand at 66.497 kb on + strand at 66.498 kb on - strand at 66.498 kb on - strand at 66.498 kb on - strand at 66.498 kb on - strand at 66.498 kb on - strand at 66.502 kb on - strand at 66.502 kb on - strand at 66.563 kb on - strand at 66.675 kb on - strand, within EX31_RS17565 at 66.698 kb on + strand, within EX31_RS17565 at 66.702 kb on + strand, within EX31_RS17565 at 66.703 kb on - strand, within EX31_RS17565 at 66.731 kb on + strand, within EX31_RS17565 at 66.847 kb on + strand, within EX31_RS17565 at 66.847 kb on + strand, within EX31_RS17565 at 66.848 kb on - strand, within EX31_RS17565 at 66.864 kb on + strand, within EX31_RS17565 at 66.876 kb on + strand, within EX31_RS17565 at 66.876 kb on + strand, within EX31_RS17565 at 66.876 kb on + strand, within EX31_RS17565 at 66.876 kb on + strand, within EX31_RS17565 at 66.877 kb on - strand, within EX31_RS17565 at 66.911 kb on + strand, within EX31_RS17565 at 66.916 kb on + strand, within EX31_RS17565 at 66.917 kb on - strand, within EX31_RS17565 at 66.949 kb on - strand, within EX31_RS17565 at 67.008 kb on + strand, within EX31_RS17565 at 67.017 kb on - strand, within EX31_RS17565 at 67.020 kb on + strand, within EX31_RS17565 at 67.021 kb on - strand, within EX31_RS17565 at 67.091 kb on - strand, within EX31_RS17565 at 67.150 kb on - strand, within EX31_RS17565 at 67.350 kb on + strand at 67.350 kb on + strand at 67.350 kb on + strand at 67.351 kb on - strand at 67.352 kb on + strand at 67.352 kb on + strand at 67.356 kb on + strand at 67.366 kb on + strand at 67.366 kb on + strand at 67.450 kb on + strand at 67.518 kb on + strand at 67.518 kb on + strand at 67.536 kb on + strand at 67.536 kb on + strand at 67.557 kb on + strand at 67.558 kb on - strand at 67.602 kb on + strand at 67.602 kb on + strand at 67.602 kb on + strand at 67.602 kb on + strand at 67.719 kb on + strand at 67.719 kb on + strand at 67.719 kb on + strand at 67.719 kb on + strand at 67.720 kb on - strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.797 kb on - strand, within EX31_RS17570 at 67.797 kb on - strand, within EX31_RS17570 at 67.813 kb on + strand, within EX31_RS17570 at 67.813 kb on + strand, within EX31_RS17570 at 67.843 kb on - strand, within EX31_RS17570 at 67.877 kb on + strand, within EX31_RS17570 at 67.886 kb on + strand, within EX31_RS17570 at 67.886 kb on + strand, within EX31_RS17570 at 67.886 kb on + strand, within EX31_RS17570 at 67.886 kb on + strand, within EX31_RS17570 at 67.886 kb on + strand, within EX31_RS17570 at 67.887 kb on - strand, within EX31_RS17570 at 67.911 kb on - strand, within EX31_RS17570 at 67.911 kb on - strand, within EX31_RS17570 at 67.953 kb on + strand, within EX31_RS17570 at 67.954 kb on - strand, within EX31_RS17570 at 67.989 kb on + strand, within EX31_RS17570 at 67.989 kb on + strand, within EX31_RS17570 at 67.989 kb on + strand, within EX31_RS17570 at 68.102 kb on + strand, within EX31_RS17570 at 68.102 kb on + strand, within EX31_RS17570 at 68.102 kb on + strand, within EX31_RS17570 at 68.106 kb on + strand, within EX31_RS17570 at 68.106 kb on + strand, within EX31_RS17570 at 68.107 kb on - strand, within EX31_RS17570 at 68.107 kb on - strand, within EX31_RS17570 at 68.128 kb on + strand, within EX31_RS17570 at 68.133 kb on + strand, within EX31_RS17570 at 68.134 kb on - strand, within EX31_RS17570 at 68.220 kb on + strand, within EX31_RS17570 at 68.220 kb on + strand, within EX31_RS17570 at 68.220 kb on + strand, within EX31_RS17570 at 68.221 kb on - strand, within EX31_RS17570 at 68.221 kb on - strand, within EX31_RS17570 at 68.296 kb on + strand, within EX31_RS17570 at 68.296 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.300 kb on - strand, within EX31_RS17570 at 68.300 kb on - strand, within EX31_RS17570 at 68.300 kb on - strand, within EX31_RS17570 at 68.300 kb on - strand, within EX31_RS17570 at 68.301 kb on + strand, within EX31_RS17570 at 68.343 kb on + strand, within EX31_RS17570 at 68.344 kb on - strand, within EX31_RS17570 at 68.344 kb on - strand, within EX31_RS17570 at 68.361 kb on + strand, within EX31_RS17570 at 68.376 kb on + strand, within EX31_RS17570
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking remove 65,656 + EX31_RS17560 0.65 +0.6 65,683 - EX31_RS17560 0.68 +1.3 65,733 + EX31_RS17560 0.75 +0.5 65,733 + EX31_RS17560 0.75 -0.9 65,737 + EX31_RS17560 0.75 +0.4 65,738 - EX31_RS17560 0.75 -0.4 65,738 - EX31_RS17560 0.75 +0.1 65,957 + +0.3 65,957 + +0.1 65,957 + +0.3 65,957 + +1.1 65,957 + +0.7 65,957 + -0.8 65,957 + +1.1 65,958 - +0.8 65,958 - -0.9 65,958 - +0.8 65,958 - -2.5 65,981 + -1.0 65,982 - -0.2 65,982 - -0.1 65,982 - +1.8 65,982 - +1.1 66,060 + -0.3 66,073 + +0.4 66,083 + -1.0 66,083 + +1.0 66,083 + -0.2 66,103 + +1.2 66,118 + -0.5 66,118 + -0.3 66,120 + +0.0 66,120 + +0.2 66,120 + +0.6 66,120 + -0.0 66,120 + -0.8 66,120 + +0.5 66,120 + -0.5 66,120 + -0.1 66,120 + +1.0 66,120 + +1.8 66,120 + +0.8 66,120 + -0.1 66,120 + +0.5 66,120 + -1.2 66,121 - +0.4 66,121 - -0.8 66,121 - +0.1 66,121 - +0.6 66,121 - +0.4 66,121 - +1.8 66,135 - -0.5 66,201 + -0.5 66,251 - +0.0 66,259 - -0.1 66,325 + -1.7 66,436 + -0.9 66,436 + -0.4 66,436 + +0.6 66,437 - -0.1 66,477 + +1.5 66,478 - +0.7 66,481 + +0.5 66,481 + -0.5 66,482 - +0.8 66,482 - +0.3 66,482 - +1.0 66,497 + -1.0 66,497 + +0.4 66,497 + +0.8 66,498 - -0.7 66,498 - -0.1 66,498 - -0.5 66,498 - +0.6 66,498 - +1.3 66,502 - +2.4 66,502 - -1.6 66,563 - +0.8 66,675 - EX31_RS17565 0.19 +0.4 66,698 + EX31_RS17565 0.21 -0.3 66,702 + EX31_RS17565 0.22 +0.5 66,703 - EX31_RS17565 0.22 -0.9 66,731 + EX31_RS17565 0.25 +0.8 66,847 + EX31_RS17565 0.38 -0.0 66,847 + EX31_RS17565 0.38 -0.9 66,848 - EX31_RS17565 0.38 +0.8 66,864 + EX31_RS17565 0.40 -1.5 66,876 + EX31_RS17565 0.41 -0.2 66,876 + EX31_RS17565 0.41 +1.2 66,876 + EX31_RS17565 0.41 -0.0 66,876 + EX31_RS17565 0.41 +0.1 66,877 - EX31_RS17565 0.41 +1.8 66,911 + EX31_RS17565 0.45 -0.5 66,916 + EX31_RS17565 0.45 +0.8 66,917 - EX31_RS17565 0.45 -0.2 66,949 - EX31_RS17565 0.49 +0.4 67,008 + EX31_RS17565 0.55 +1.5 67,017 - EX31_RS17565 0.56 -1.1 67,020 + EX31_RS17565 0.57 -1.2 67,021 - EX31_RS17565 0.57 -1.0 67,091 - EX31_RS17565 0.64 -0.2 67,150 - EX31_RS17565 0.71 +0.2 67,350 + -0.2 67,350 + +0.7 67,350 + -1.1 67,351 - -0.0 67,352 + +0.1 67,352 + +0.7 67,356 + +0.3 67,366 + -0.6 67,366 + +0.7 67,450 + -0.5 67,518 + +1.1 67,518 + -0.5 67,536 + +0.7 67,536 + -0.1 67,557 + -0.2 67,558 - +0.1 67,602 + +0.2 67,602 + -1.4 67,602 + -0.7 67,602 + +0.2 67,719 + +0.8 67,719 + +0.6 67,719 + -2.7 67,719 + +0.5 67,720 - +0.5 67,732 + +1.3 67,732 + +1.3 67,732 + -0.3 67,732 + -0.8 67,732 + -0.2 67,797 - EX31_RS17570 0.16 +0.9 67,797 - EX31_RS17570 0.16 +0.2 67,813 + EX31_RS17570 0.18 -0.5 67,813 + EX31_RS17570 0.18 +0.3 67,843 - EX31_RS17570 0.21 -0.0 67,877 + EX31_RS17570 0.24 +0.3 67,886 + EX31_RS17570 0.25 -0.9 67,886 + EX31_RS17570 0.25 +0.2 67,886 + EX31_RS17570 0.25 -0.0 67,886 + EX31_RS17570 0.25 -0.4 67,886 + EX31_RS17570 0.25 +0.5 67,887 - EX31_RS17570 0.25 +0.6 67,911 - EX31_RS17570 0.27 +0.7 67,911 - EX31_RS17570 0.27 +0.0 67,953 + EX31_RS17570 0.31 -2.0 67,954 - EX31_RS17570 0.31 -0.4 67,989 + EX31_RS17570 0.35 -0.0 67,989 + EX31_RS17570 0.35 +0.9 67,989 + EX31_RS17570 0.35 +0.2 68,102 + EX31_RS17570 0.45 +0.2 68,102 + EX31_RS17570 0.45 -0.5 68,102 + EX31_RS17570 0.45 -0.0 68,106 + EX31_RS17570 0.46 +0.3 68,106 + EX31_RS17570 0.46 +0.6 68,107 - EX31_RS17570 0.46 -1.5 68,107 - EX31_RS17570 0.46 +0.9 68,128 + EX31_RS17570 0.48 +1.4 68,133 + EX31_RS17570 0.48 -0.2 68,134 - EX31_RS17570 0.49 +2.8 68,220 + EX31_RS17570 0.57 +0.2 68,220 + EX31_RS17570 0.57 -0.2 68,220 + EX31_RS17570 0.57 +0.0 68,221 - EX31_RS17570 0.57 -0.1 68,221 - EX31_RS17570 0.57 +1.0 68,296 + EX31_RS17570 0.64 +0.7 68,296 + EX31_RS17570 0.64 +1.0 68,299 + EX31_RS17570 0.64 -0.0 68,299 + EX31_RS17570 0.64 +0.9 68,299 + EX31_RS17570 0.64 -1.2 68,299 + EX31_RS17570 0.64 +1.2 68,299 + EX31_RS17570 0.64 +0.1 68,299 + EX31_RS17570 0.64 -0.5 68,299 + EX31_RS17570 0.64 -0.6 68,299 + EX31_RS17570 0.64 +0.3 68,299 + EX31_RS17570 0.64 -0.0 68,299 + EX31_RS17570 0.64 -1.6 68,299 + EX31_RS17570 0.64 -1.2 68,299 + EX31_RS17570 0.64 +0.4 68,299 + EX31_RS17570 0.64 -1.0 68,300 - EX31_RS17570 0.65 +0.9 68,300 - EX31_RS17570 0.65 -0.7 68,300 - EX31_RS17570 0.65 -0.2 68,300 - EX31_RS17570 0.65 -0.5 68,301 + EX31_RS17570 0.65 +0.1 68,343 + EX31_RS17570 0.69 -1.0 68,344 - EX31_RS17570 0.69 +1.1 68,344 - EX31_RS17570 0.69 +0.8 68,361 + EX31_RS17570 0.70 +0.8 68,376 + EX31_RS17570 0.72 -0.1
Or see this region's nucleotide sequence