Strain Fitness in Rahnella sp. WP5 around EX31_RS12920

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12910 and EX31_RS12915 are separated by 65 nucleotidesEX31_RS12915 and EX31_RS12920 are separated by 5 nucleotidesEX31_RS12920 and EX31_RS12925 are separated by 215 nucleotidesEX31_RS12925 and EX31_RS12930 overlap by 14 nucleotidesEX31_RS12930 and EX31_RS12935 are separated by 66 nucleotides EX31_RS12910: EX31_RS12910 - envelope stress response activation lipoprotein NlpE, at 6,883 to 7,560 _RS12910 EX31_RS12915: EX31_RS12915 - aminoacyl-tRNA hydrolase, at 7,626 to 8,036 _RS12915 EX31_RS12920: EX31_RS12920 - YaeQ family protein, at 8,042 to 8,602 _RS12920 EX31_RS12925: EX31_RS12925 - YaeP family protein, at 8,818 to 9,018 _RS12925 EX31_RS12930: EX31_RS12930 - Rho-binding antiterminator, at 9,005 to 9,265 _RS12930 EX31_RS12935: EX31_RS12935 - cytochrome c, at 9,332 to 9,661 _RS12935 Position (kb) 8 9Strain fitness (log2 ratio) -2 -1 0 1 2 3at 7.054 kb on - strand, within EX31_RS12910at 7.054 kb on - strand, within EX31_RS12910at 7.054 kb on - strand, within EX31_RS12910at 7.054 kb on - strand, within EX31_RS12910at 7.072 kb on + strand, within EX31_RS12910at 7.072 kb on + strand, within EX31_RS12910at 7.073 kb on - strand, within EX31_RS12910at 7.073 kb on - strand, within EX31_RS12910at 7.073 kb on - strand, within EX31_RS12910at 7.073 kb on - strand, within EX31_RS12910at 7.073 kb on - strand, within EX31_RS12910at 7.073 kb on - strand, within EX31_RS12910at 7.073 kb on - strand, within EX31_RS12910at 7.073 kb on - strand, within EX31_RS12910at 7.118 kb on + strand, within EX31_RS12910at 7.119 kb on - strand, within EX31_RS12910at 7.119 kb on - strand, within EX31_RS12910at 7.119 kb on - strand, within EX31_RS12910at 7.119 kb on - strand, within EX31_RS12910at 7.119 kb on - strand, within EX31_RS12910at 7.182 kb on + strand, within EX31_RS12910at 7.182 kb on + strand, within EX31_RS12910at 7.182 kb on + strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.183 kb on - strand, within EX31_RS12910at 7.184 kb on + strand, within EX31_RS12910at 7.185 kb on - strand, within EX31_RS12910at 7.185 kb on - strand, within EX31_RS12910at 7.185 kb on - strand, within EX31_RS12910at 7.185 kb on - strand, within EX31_RS12910at 7.185 kb on - strand, within EX31_RS12910at 7.185 kb on - strand, within EX31_RS12910at 7.319 kb on + strand, within EX31_RS12910at 7.359 kb on - strand, within EX31_RS12910at 7.359 kb on - strand, within EX31_RS12910at 7.359 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.377 kb on - strand, within EX31_RS12910at 7.399 kb on + strand, within EX31_RS12910at 7.399 kb on + strand, within EX31_RS12910at 7.400 kb on - strand, within EX31_RS12910at 7.400 kb on - strand, within EX31_RS12910at 7.400 kb on - strand, within EX31_RS12910at 7.400 kb on - strand, within EX31_RS12910at 7.542 kb on + strandat 7.543 kb on - strandat 7.543 kb on - strandat 7.621 kb on + strandat 7.622 kb on - strandat 7.632 kb on + strandat 7.633 kb on - strandat 7.633 kb on - strandat 7.633 kb on - strandat 7.633 kb on - strandat 7.633 kb on - strandat 7.633 kb on - strandat 7.633 kb on - strandat 7.633 kb on - strandat 7.674 kb on - strand, within EX31_RS12915at 7.808 kb on - strand, within EX31_RS12915at 7.823 kb on + strand, within EX31_RS12915at 7.859 kb on + strand, within EX31_RS12915at 7.859 kb on + strand, within EX31_RS12915at 7.860 kb on - strand, within EX31_RS12915at 7.883 kb on - strand, within EX31_RS12915at 7.883 kb on - strand, within EX31_RS12915at 7.886 kb on - strand, within EX31_RS12915at 7.886 kb on - strand, within EX31_RS12915at 7.907 kb on + strand, within EX31_RS12915at 7.908 kb on - strand, within EX31_RS12915at 7.921 kb on - strand, within EX31_RS12915at 7.921 kb on - strand, within EX31_RS12915at 7.944 kb on - strand, within EX31_RS12915at 8.007 kb on + strandat 8.032 kb on - strandat 8.043 kb on + strandat 8.058 kb on - strandat 8.058 kb on - strandat 8.123 kb on - strand, within EX31_RS12920at 8.147 kb on + strand, within EX31_RS12920at 8.148 kb on - strand, within EX31_RS12920at 8.159 kb on - strand, within EX31_RS12920at 8.201 kb on + strand, within EX31_RS12920at 8.201 kb on + strand, within EX31_RS12920at 8.202 kb on - strand, within EX31_RS12920at 8.202 kb on - strand, within EX31_RS12920at 8.289 kb on + strand, within EX31_RS12920at 8.290 kb on - strand, within EX31_RS12920at 8.290 kb on - strand, within EX31_RS12920at 8.346 kb on - strand, within EX31_RS12920at 8.363 kb on + strand, within EX31_RS12920at 8.363 kb on + strand, within EX31_RS12920at 8.364 kb on - strand, within EX31_RS12920at 8.377 kb on + strand, within EX31_RS12920at 8.378 kb on - strand, within EX31_RS12920at 8.378 kb on - strand, within EX31_RS12920at 8.378 kb on - strand, within EX31_RS12920at 8.378 kb on - strand, within EX31_RS12920at 8.458 kb on - strand, within EX31_RS12920at 8.458 kb on - strand, within EX31_RS12920at 8.458 kb on - strand, within EX31_RS12920at 8.458 kb on - strand, within EX31_RS12920at 8.458 kb on - strand, within EX31_RS12920at 8.545 kb on + strand, within EX31_RS12920at 8.545 kb on + strand, within EX31_RS12920at 8.564 kb on - strandat 8.580 kb on + strandat 8.580 kb on + strandat 8.581 kb on - strandat 8.594 kb on + strandat 8.595 kb on - strandat 8.595 kb on - strandat 8.595 kb on - strandat 8.605 kb on + strandat 8.617 kb on + strandat 8.617 kb on + strandat 8.618 kb on - strandat 8.618 kb on - strandat 8.621 kb on - strandat 8.621 kb on - strandat 8.634 kb on - strandat 8.634 kb on - strandat 8.634 kb on - strandat 8.684 kb on + strandat 8.685 kb on - strandat 8.693 kb on + strandat 8.694 kb on - strandat 8.707 kb on - strandat 8.707 kb on - strandat 8.724 kb on - strandat 8.726 kb on + strandat 8.727 kb on - strandat 8.727 kb on - strandat 8.727 kb on - strandat 8.727 kb on - strandat 8.727 kb on - strandat 8.746 kb on + strandat 8.746 kb on + strandat 8.746 kb on + strandat 8.746 kb on + strandat 8.747 kb on - strandat 8.747 kb on - strandat 8.747 kb on - strandat 8.747 kb on - strandat 8.747 kb on - strandat 8.748 kb on + strandat 8.748 kb on + strandat 8.749 kb on - strandat 8.756 kb on - strandat 8.759 kb on + strandat 8.760 kb on - strandat 8.770 kb on + strandat 8.770 kb on + strandat 8.770 kb on + strandat 8.771 kb on - strandat 8.771 kb on - strandat 8.817 kb on + strandat 8.817 kb on + strandat 8.817 kb on + strandat 8.818 kb on - strandat 8.818 kb on - strandat 8.818 kb on - strandat 8.818 kb on - strandat 8.818 kb on - strandat 8.827 kb on + strandat 8.827 kb on + strandat 8.827 kb on + strandat 8.827 kb on + strandat 8.827 kb on + strandat 8.828 kb on - strandat 8.828 kb on - strandat 8.828 kb on - strandat 8.828 kb on - strandat 8.828 kb on - strandat 8.828 kb on - strandat 8.841 kb on - strand, within EX31_RS12925at 8.847 kb on + strand, within EX31_RS12925at 8.847 kb on + strand, within EX31_RS12925at 8.847 kb on + strand, within EX31_RS12925at 8.848 kb on - strand, within EX31_RS12925at 8.851 kb on + strand, within EX31_RS12925at 8.851 kb on + strand, within EX31_RS12925at 8.881 kb on + strand, within EX31_RS12925at 8.882 kb on - strand, within EX31_RS12925at 8.990 kb on + strand, within EX31_RS12925at 8.990 kb on + strand, within EX31_RS12925at 8.991 kb on - strand, within EX31_RS12925at 9.005 kb on - strandat 9.023 kb on + strandat 9.023 kb on + strandat 9.024 kb on - strandat 9.047 kb on + strand, within EX31_RS12930at 9.053 kb on - strand, within EX31_RS12930at 9.141 kb on + strand, within EX31_RS12930at 9.161 kb on + strand, within EX31_RS12930at 9.161 kb on + strand, within EX31_RS12930at 9.161 kb on + strand, within EX31_RS12930at 9.162 kb on - strand, within EX31_RS12930at 9.162 kb on - strand, within EX31_RS12930at 9.283 kb on + strandat 9.283 kb on + strandat 9.283 kb on + strandat 9.284 kb on - strandat 9.334 kb on - strandat 9.358 kb on - strandat 9.358 kb on - strandat 9.360 kb on + strandat 9.361 kb on - strandat 9.361 kb on - strandat 9.361 kb on - strandat 9.361 kb on - strandat 9.361 kb on - strandat 9.404 kb on - strand, within EX31_RS12935at 9.454 kb on - strand, within EX31_RS12935at 9.454 kb on - strand, within EX31_RS12935at 9.454 kb on - strand, within EX31_RS12935at 9.454 kb on - strand, within EX31_RS12935at 9.454 kb on - strand, within EX31_RS12935at 9.454 kb on - strand, within EX31_RS12935at 9.477 kb on + strand, within EX31_RS12935at 9.478 kb on - strand, within EX31_RS12935at 9.478 kb on - strand, within EX31_RS12935at 9.478 kb on - strand, within EX31_RS12935at 9.502 kb on + strand, within EX31_RS12935at 9.503 kb on - strand, within EX31_RS12935at 9.508 kb on - strand, within EX31_RS12935at 9.517 kb on + strand, within EX31_RS12935at 9.517 kb on + strand, within EX31_RS12935at 9.518 kb on - strand, within EX31_RS12935at 9.565 kb on + strand, within EX31_RS12935at 9.566 kb on - strand, within EX31_RS12935at 9.566 kb on - strand, within EX31_RS12935

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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7,054 - EX31_RS12910 0.25 -0.2
7,054 - EX31_RS12910 0.25 +0.0
7,054 - EX31_RS12910 0.25 +0.7
7,054 - EX31_RS12910 0.25 -0.5
7,072 + EX31_RS12910 0.28 -0.4
7,072 + EX31_RS12910 0.28 +0.0
7,073 - EX31_RS12910 0.28 +0.9
7,073 - EX31_RS12910 0.28 -1.1
7,073 - EX31_RS12910 0.28 -0.6
7,073 - EX31_RS12910 0.28 +1.6
7,073 - EX31_RS12910 0.28 -0.1
7,073 - EX31_RS12910 0.28 +0.5
7,073 - EX31_RS12910 0.28 -0.6
7,073 - EX31_RS12910 0.28 -0.6
7,118 + EX31_RS12910 0.35 +0.5
7,119 - EX31_RS12910 0.35 -0.3
7,119 - EX31_RS12910 0.35 -0.1
7,119 - EX31_RS12910 0.35 +0.6
7,119 - EX31_RS12910 0.35 -0.3
7,119 - EX31_RS12910 0.35 -0.4
7,182 + EX31_RS12910 0.44 +0.7
7,182 + EX31_RS12910 0.44 -0.3
7,182 + EX31_RS12910 0.44 -0.9
7,183 - EX31_RS12910 0.44 +0.7
7,183 - EX31_RS12910 0.44 +0.4
7,183 - EX31_RS12910 0.44 +0.2
7,183 - EX31_RS12910 0.44 +2.0
7,183 - EX31_RS12910 0.44 +1.0
7,183 - EX31_RS12910 0.44 -0.1
7,183 - EX31_RS12910 0.44 +0.7
7,183 - EX31_RS12910 0.44 -0.4
7,183 - EX31_RS12910 0.44 +0.2
7,183 - EX31_RS12910 0.44 +0.0
7,183 - EX31_RS12910 0.44 -0.1
7,183 - EX31_RS12910 0.44 -1.3
7,183 - EX31_RS12910 0.44 +0.6
7,183 - EX31_RS12910 0.44 -0.5
7,183 - EX31_RS12910 0.44 -0.2
7,183 - EX31_RS12910 0.44 -0.3
7,183 - EX31_RS12910 0.44 +0.2
7,184 + EX31_RS12910 0.44 -0.3
7,185 - EX31_RS12910 0.45 -1.9
7,185 - EX31_RS12910 0.45 +0.1
7,185 - EX31_RS12910 0.45 +0.8
7,185 - EX31_RS12910 0.45 +0.5
7,185 - EX31_RS12910 0.45 +0.3
7,185 - EX31_RS12910 0.45 +0.6
7,319 + EX31_RS12910 0.64 -0.9
7,359 - EX31_RS12910 0.70 +0.3
7,359 - EX31_RS12910 0.70 -0.4
7,359 - EX31_RS12910 0.70 +0.2
7,377 - EX31_RS12910 0.73 -1.0
7,377 - EX31_RS12910 0.73 -0.3
7,377 - EX31_RS12910 0.73 -0.2
7,377 - EX31_RS12910 0.73 -0.3
7,377 - EX31_RS12910 0.73 +0.2
7,377 - EX31_RS12910 0.73 +1.2
7,377 - EX31_RS12910 0.73 +0.6
7,377 - EX31_RS12910 0.73 -0.9
7,377 - EX31_RS12910 0.73 -0.0
7,377 - EX31_RS12910 0.73 -0.0
7,377 - EX31_RS12910 0.73 +0.4
7,377 - EX31_RS12910 0.73 -0.2
7,377 - EX31_RS12910 0.73 +0.6
7,377 - EX31_RS12910 0.73 +1.5
7,377 - EX31_RS12910 0.73 -0.2
7,377 - EX31_RS12910 0.73 +0.0
7,377 - EX31_RS12910 0.73 +0.0
7,377 - EX31_RS12910 0.73 -0.1
7,399 + EX31_RS12910 0.76 +1.8
7,399 + EX31_RS12910 0.76 +1.6
7,400 - EX31_RS12910 0.76 +0.6
7,400 - EX31_RS12910 0.76 -0.5
7,400 - EX31_RS12910 0.76 +1.2
7,400 - EX31_RS12910 0.76 -1.2
7,542 + +0.6
7,543 - +0.1
7,543 - +0.2
7,621 + +1.6
7,622 - -1.7
7,632 + +2.8
7,633 - -0.2
7,633 - +0.4
7,633 - +1.3
7,633 - +0.5
7,633 - +0.3
7,633 - -0.2
7,633 - +0.8
7,633 - +0.2
7,674 - EX31_RS12915 0.12 +0.6
7,808 - EX31_RS12915 0.44 -2.2
7,823 + EX31_RS12915 0.48 -0.1
7,859 + EX31_RS12915 0.57 +0.1
7,859 + EX31_RS12915 0.57 +1.2
7,860 - EX31_RS12915 0.57 -1.3
7,883 - EX31_RS12915 0.63 -0.5
7,883 - EX31_RS12915 0.63 +1.6
7,886 - EX31_RS12915 0.63 +0.0
7,886 - EX31_RS12915 0.63 -1.4
7,907 + EX31_RS12915 0.68 -0.3
7,908 - EX31_RS12915 0.69 -1.7
7,921 - EX31_RS12915 0.72 -1.3
7,921 - EX31_RS12915 0.72 -0.2
7,944 - EX31_RS12915 0.77 +1.1
8,007 + -2.0
8,032 - +0.4
8,043 + +0.2
8,058 - -0.1
8,058 - -0.5
8,123 - EX31_RS12920 0.14 +0.7
8,147 + EX31_RS12920 0.19 +0.9
8,148 - EX31_RS12920 0.19 +1.1
8,159 - EX31_RS12920 0.21 +0.2
8,201 + EX31_RS12920 0.28 +2.2
8,201 + EX31_RS12920 0.28 +0.6
8,202 - EX31_RS12920 0.29 +0.1
8,202 - EX31_RS12920 0.29 +0.7
8,289 + EX31_RS12920 0.44 +1.0
8,290 - EX31_RS12920 0.44 +0.1
8,290 - EX31_RS12920 0.44 +0.1
8,346 - EX31_RS12920 0.54 +0.2
8,363 + EX31_RS12920 0.57 +1.8
8,363 + EX31_RS12920 0.57 -0.5
8,364 - EX31_RS12920 0.57 +0.0
8,377 + EX31_RS12920 0.60 -0.7
8,378 - EX31_RS12920 0.60 +0.7
8,378 - EX31_RS12920 0.60 -0.9
8,378 - EX31_RS12920 0.60 -0.6
8,378 - EX31_RS12920 0.60 +0.4
8,458 - EX31_RS12920 0.74 -0.0
8,458 - EX31_RS12920 0.74 +0.1
8,458 - EX31_RS12920 0.74 +0.3
8,458 - EX31_RS12920 0.74 +0.4
8,458 - EX31_RS12920 0.74 +0.9
8,545 + EX31_RS12920 0.90 +2.6
8,545 + EX31_RS12920 0.90 -0.4
8,564 - +1.5
8,580 + +2.2
8,580 + +0.6
8,581 - -1.4
8,594 + +0.7
8,595 - +0.6
8,595 - -0.2
8,595 - +0.2
8,605 + +0.7
8,617 + +0.2
8,617 + +0.3
8,618 - +0.4
8,618 - -2.7
8,621 - +3.2
8,621 - -0.6
8,634 - +0.0
8,634 - +0.0
8,634 - -0.0
8,684 + +1.3
8,685 - -1.3
8,693 + +1.2
8,694 - +0.0
8,707 - +1.5
8,707 - +0.8
8,724 - +0.5
8,726 + +3.2
8,727 - +0.3
8,727 - -0.9
8,727 - -1.9
8,727 - +1.1
8,727 - +0.2
8,746 + -0.1
8,746 + -0.7
8,746 + -1.6
8,746 + +0.0
8,747 - -0.5
8,747 - -0.9
8,747 - -0.3
8,747 - -0.4
8,747 - +1.1
8,748 + +0.1
8,748 + +2.0
8,749 - -1.4
8,756 - -0.3
8,759 + +0.2
8,760 - -0.3
8,770 + -1.2
8,770 + +0.6
8,770 + +0.9
8,771 - -0.5
8,771 - +0.5
8,817 + -0.1
8,817 + +0.4
8,817 + +0.1
8,818 - +0.4
8,818 - +0.3
8,818 - -0.1
8,818 - +1.2
8,818 - +1.5
8,827 + +1.3
8,827 + +0.0
8,827 + +0.6
8,827 + -0.4
8,827 + +0.2
8,828 - +1.1
8,828 - +1.1
8,828 - -0.2
8,828 - +0.3
8,828 - +1.5
8,828 - -0.4
8,841 - EX31_RS12925 0.11 -0.5
8,847 + EX31_RS12925 0.14 -0.5
8,847 + EX31_RS12925 0.14 +1.0
8,847 + EX31_RS12925 0.14 +0.6
8,848 - EX31_RS12925 0.15 +1.0
8,851 + EX31_RS12925 0.16 -0.1
8,851 + EX31_RS12925 0.16 +0.9
8,881 + EX31_RS12925 0.31 +0.2
8,882 - EX31_RS12925 0.32 +1.9
8,990 + EX31_RS12925 0.86 -0.3
8,990 + EX31_RS12925 0.86 +1.1
8,991 - EX31_RS12925 0.86 -0.4
9,005 - +0.5
9,023 + +0.0
9,023 + -0.8
9,024 - +1.8
9,047 + EX31_RS12930 0.16 -0.4
9,053 - EX31_RS12930 0.18 +1.2
9,141 + EX31_RS12930 0.52 +1.2
9,161 + EX31_RS12930 0.60 -0.2
9,161 + EX31_RS12930 0.60 +0.4
9,161 + EX31_RS12930 0.60 +0.2
9,162 - EX31_RS12930 0.60 +0.4
9,162 - EX31_RS12930 0.60 -0.4
9,283 + +0.9
9,283 + +0.5
9,283 + -0.1
9,284 - -0.9
9,334 - +0.3
9,358 - -1.6
9,358 - +0.6
9,360 + +0.6
9,361 - +0.1
9,361 - -0.1
9,361 - +0.9
9,361 - +0.6
9,361 - +0.5
9,404 - EX31_RS12935 0.22 +1.5
9,454 - EX31_RS12935 0.37 -1.2
9,454 - EX31_RS12935 0.37 -1.9
9,454 - EX31_RS12935 0.37 +0.6
9,454 - EX31_RS12935 0.37 +0.8
9,454 - EX31_RS12935 0.37 +1.5
9,454 - EX31_RS12935 0.37 -0.8
9,477 + EX31_RS12935 0.44 +0.1
9,478 - EX31_RS12935 0.44 +0.9
9,478 - EX31_RS12935 0.44 +1.0
9,478 - EX31_RS12935 0.44 -0.1
9,502 + EX31_RS12935 0.52 +0.6
9,503 - EX31_RS12935 0.52 +1.1
9,508 - EX31_RS12935 0.53 -1.3
9,517 + EX31_RS12935 0.56 +1.5
9,517 + EX31_RS12935 0.56 -0.5
9,518 - EX31_RS12935 0.56 +0.8
9,565 + EX31_RS12935 0.71 +0.1
9,566 - EX31_RS12935 0.71 +1.3
9,566 - EX31_RS12935 0.71 +1.6

Or see this region's nucleotide sequence