Strain Fitness in Rahnella sp. WP5 around EX31_RS03775

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03770 and EX31_RS03775 overlap by 11 nucleotidesEX31_RS03775 and EX31_RS03780 are separated by 5 nucleotidesEX31_RS03780 and EX31_RS03785 are separated by 4 nucleotides EX31_RS03770: EX31_RS03770 - peptidylprolyl isomerase SurA, at 262,867 to 264,162 _RS03770 EX31_RS03775: EX31_RS03775 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 264,152 to 265,159 _RS03775 EX31_RS03780: EX31_RS03780 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 265,165 to 265,992 _RS03780 EX31_RS03785: EX31_RS03785 - Co2+/Mg2+ efflux protein ApaG, at 265,997 to 266,374 _RS03785 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 263.157 kb on + strand, within EX31_RS03770at 263.224 kb on + strand, within EX31_RS03770at 263.224 kb on + strand, within EX31_RS03770at 263.239 kb on + strand, within EX31_RS03770at 263.239 kb on + strand, within EX31_RS03770at 263.239 kb on + strand, within EX31_RS03770at 263.239 kb on + strand, within EX31_RS03770at 263.239 kb on + strand, within EX31_RS03770at 263.248 kb on + strand, within EX31_RS03770at 263.248 kb on + strand, within EX31_RS03770at 263.248 kb on + strand, within EX31_RS03770at 263.288 kb on + strand, within EX31_RS03770at 263.288 kb on + strand, within EX31_RS03770at 263.288 kb on + strand, within EX31_RS03770at 263.292 kb on + strand, within EX31_RS03770at 263.292 kb on + strand, within EX31_RS03770at 263.292 kb on + strand, within EX31_RS03770at 263.292 kb on + strand, within EX31_RS03770at 263.292 kb on + strand, within EX31_RS03770at 263.321 kb on + strand, within EX31_RS03770at 263.521 kb on + strand, within EX31_RS03770at 263.521 kb on + strand, within EX31_RS03770at 263.521 kb on + strand, within EX31_RS03770at 263.521 kb on + strand, within EX31_RS03770at 263.697 kb on + strand, within EX31_RS03770at 263.756 kb on + strand, within EX31_RS03770at 263.808 kb on + strand, within EX31_RS03770at 263.808 kb on + strand, within EX31_RS03770at 263.808 kb on + strand, within EX31_RS03770at 263.808 kb on + strand, within EX31_RS03770at 263.808 kb on + strand, within EX31_RS03770at 263.871 kb on + strand, within EX31_RS03770at 263.888 kb on + strand, within EX31_RS03770at 263.907 kb on + strand, within EX31_RS03770at 263.907 kb on + strand, within EX31_RS03770at 263.907 kb on + strand, within EX31_RS03770at 263.907 kb on + strand, within EX31_RS03770at 263.907 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 264.006 kb on + strand, within EX31_RS03770at 264.006 kb on + strand, within EX31_RS03770at 264.027 kb on + strand, within EX31_RS03770at 264.058 kb on + strandat 264.058 kb on + strandat 264.063 kb on + strandat 264.130 kb on + strandat 264.130 kb on + strandat 264.130 kb on + strandat 264.130 kb on + strandat 264.141 kb on + strandat 264.163 kb on + strandat 264.163 kb on + strandat 264.264 kb on + strand, within EX31_RS03775at 264.264 kb on + strand, within EX31_RS03775at 264.691 kb on + strand, within EX31_RS03775at 264.757 kb on + strand, within EX31_RS03775at 264.773 kb on + strand, within EX31_RS03775at 264.838 kb on + strand, within EX31_RS03775at 264.956 kb on + strand, within EX31_RS03775at 264.956 kb on + strand, within EX31_RS03775at 264.981 kb on + strand, within EX31_RS03775at 264.981 kb on + strand, within EX31_RS03775at 264.986 kb on + strand, within EX31_RS03775at 265.012 kb on + strand, within EX31_RS03775at 265.141 kb on + strandat 265.990 kb on + strandat 265.996 kb on + strandat 265.997 kb on - strandat 266.002 kb on + strandat 266.002 kb on + strandat 266.002 kb on + strandat 266.002 kb on + strandat 266.002 kb on + strandat 266.003 kb on - strandat 266.003 kb on - strandat 266.003 kb on - strandat 266.035 kb on + strand, within EX31_RS03785at 266.035 kb on + strand, within EX31_RS03785at 266.035 kb on + strand, within EX31_RS03785at 266.035 kb on + strand, within EX31_RS03785at 266.035 kb on + strand, within EX31_RS03785at 266.035 kb on + strand, within EX31_RS03785at 266.036 kb on - strand, within EX31_RS03785at 266.039 kb on + strand, within EX31_RS03785at 266.039 kb on + strand, within EX31_RS03785at 266.039 kb on + strand, within EX31_RS03785at 266.039 kb on + strand, within EX31_RS03785at 266.039 kb on + strand, within EX31_RS03785at 266.039 kb on + strand, within EX31_RS03785at 266.040 kb on - strand, within EX31_RS03785at 266.040 kb on - strand, within EX31_RS03785at 266.087 kb on + strand, within EX31_RS03785at 266.087 kb on + strand, within EX31_RS03785at 266.087 kb on + strand, within EX31_RS03785at 266.119 kb on + strand, within EX31_RS03785at 266.119 kb on + strand, within EX31_RS03785at 266.120 kb on - strand, within EX31_RS03785at 266.151 kb on + strand, within EX31_RS03785

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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263,157 + EX31_RS03770 0.22 -0.1
263,224 + EX31_RS03770 0.28 -0.1
263,224 + EX31_RS03770 0.28 +0.2
263,239 + EX31_RS03770 0.29 -1.1
263,239 + EX31_RS03770 0.29 -0.3
263,239 + EX31_RS03770 0.29 -0.5
263,239 + EX31_RS03770 0.29 -0.8
263,239 + EX31_RS03770 0.29 -0.8
263,248 + EX31_RS03770 0.29 -0.3
263,248 + EX31_RS03770 0.29 -0.1
263,248 + EX31_RS03770 0.29 -1.5
263,288 + EX31_RS03770 0.32 -0.3
263,288 + EX31_RS03770 0.32 -0.6
263,288 + EX31_RS03770 0.32 -1.1
263,292 + EX31_RS03770 0.33 -0.2
263,292 + EX31_RS03770 0.33 -0.6
263,292 + EX31_RS03770 0.33 +0.1
263,292 + EX31_RS03770 0.33 -0.7
263,292 + EX31_RS03770 0.33 -0.8
263,321 + EX31_RS03770 0.35 +0.7
263,521 + EX31_RS03770 0.50 +0.4
263,521 + EX31_RS03770 0.50 -0.2
263,521 + EX31_RS03770 0.50 +0.2
263,521 + EX31_RS03770 0.50 -0.5
263,697 + EX31_RS03770 0.64 -0.2
263,756 + EX31_RS03770 0.69 -1.1
263,808 + EX31_RS03770 0.73 -0.6
263,808 + EX31_RS03770 0.73 -0.8
263,808 + EX31_RS03770 0.73 -1.5
263,808 + EX31_RS03770 0.73 +0.5
263,808 + EX31_RS03770 0.73 +0.0
263,871 + EX31_RS03770 0.77 -0.7
263,888 + EX31_RS03770 0.79 -0.5
263,907 + EX31_RS03770 0.80 -0.8
263,907 + EX31_RS03770 0.80 -0.8
263,907 + EX31_RS03770 0.80 -0.5
263,907 + EX31_RS03770 0.80 -0.6
263,907 + EX31_RS03770 0.80 -2.2
263,911 + EX31_RS03770 0.81 -0.9
263,911 + EX31_RS03770 0.81 -0.3
263,911 + EX31_RS03770 0.81 -0.5
263,911 + EX31_RS03770 0.81 -0.4
263,911 + EX31_RS03770 0.81 -0.7
263,911 + EX31_RS03770 0.81 -0.9
263,911 + EX31_RS03770 0.81 +0.1
263,911 + EX31_RS03770 0.81 -1.7
264,006 + EX31_RS03770 0.88 -0.9
264,006 + EX31_RS03770 0.88 -0.9
264,027 + EX31_RS03770 0.90 -0.8
264,058 + -1.6
264,058 + -1.0
264,063 + -0.8
264,130 + -0.5
264,130 + +0.2
264,130 + -0.3
264,130 + -1.3
264,141 + -1.0
264,163 + -3.0
264,163 + -3.2
264,264 + EX31_RS03775 0.11 -2.6
264,264 + EX31_RS03775 0.11 -2.2
264,691 + EX31_RS03775 0.53 -0.5
264,757 + EX31_RS03775 0.60 -1.8
264,773 + EX31_RS03775 0.62 -2.4
264,838 + EX31_RS03775 0.68 -2.0
264,956 + EX31_RS03775 0.80 -3.4
264,956 + EX31_RS03775 0.80 -1.7
264,981 + EX31_RS03775 0.82 -0.9
264,981 + EX31_RS03775 0.82 -1.8
264,986 + EX31_RS03775 0.83 -1.9
265,012 + EX31_RS03775 0.85 -0.2
265,141 + -0.1
265,990 + +0.9
265,996 + -0.7
265,997 - -1.8
266,002 + -0.1
266,002 + +0.4
266,002 + +0.1
266,002 + -0.2
266,002 + -0.3
266,003 - -0.2
266,003 - +0.7
266,003 - -2.1
266,035 + EX31_RS03785 0.10 -1.1
266,035 + EX31_RS03785 0.10 -0.6
266,035 + EX31_RS03785 0.10 -0.3
266,035 + EX31_RS03785 0.10 +0.2
266,035 + EX31_RS03785 0.10 -0.3
266,035 + EX31_RS03785 0.10 +0.2
266,036 - EX31_RS03785 0.10 -0.8
266,039 + EX31_RS03785 0.11 +0.8
266,039 + EX31_RS03785 0.11 +0.2
266,039 + EX31_RS03785 0.11 +2.8
266,039 + EX31_RS03785 0.11 +0.7
266,039 + EX31_RS03785 0.11 +0.4
266,039 + EX31_RS03785 0.11 +1.1
266,040 - EX31_RS03785 0.11 -0.2
266,040 - EX31_RS03785 0.11 -0.3
266,087 + EX31_RS03785 0.24 +0.2
266,087 + EX31_RS03785 0.24 +0.2
266,087 + EX31_RS03785 0.24 -1.3
266,119 + EX31_RS03785 0.32 +1.1
266,119 + EX31_RS03785 0.32 -0.1
266,120 - EX31_RS03785 0.33 -0.1
266,151 + EX31_RS03785 0.41 -0.3

Or see this region's nucleotide sequence