Strain Fitness in Rahnella sp. WP5 around EX31_RS02895

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02890 and EX31_RS02895 are separated by 18 nucleotidesEX31_RS02895 and EX31_RS02900 are separated by 4 nucleotides EX31_RS02890: EX31_RS02890 - lipopolysaccharide biosynthesis protein, at 54,050 to 55,513 _RS02890 EX31_RS02895: EX31_RS02895 - hypothetical protein, at 55,532 to 56,548 _RS02895 EX31_RS02900: EX31_RS02900 - glycosyltransferase, at 56,553 to 57,791 _RS02900 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 54.551 kb on - strand, within EX31_RS02890at 54.630 kb on - strand, within EX31_RS02890at 54.630 kb on - strand, within EX31_RS02890at 54.633 kb on + strand, within EX31_RS02890at 54.634 kb on - strand, within EX31_RS02890at 54.634 kb on - strand, within EX31_RS02890at 54.743 kb on - strand, within EX31_RS02890at 54.743 kb on - strand, within EX31_RS02890at 54.743 kb on - strand, within EX31_RS02890at 54.746 kb on - strand, within EX31_RS02890at 54.752 kb on - strand, within EX31_RS02890at 54.769 kb on - strand, within EX31_RS02890at 54.799 kb on - strand, within EX31_RS02890at 54.945 kb on - strand, within EX31_RS02890at 54.945 kb on - strand, within EX31_RS02890at 54.983 kb on + strand, within EX31_RS02890at 54.983 kb on + strand, within EX31_RS02890at 54.984 kb on - strand, within EX31_RS02890at 54.984 kb on - strand, within EX31_RS02890at 55.009 kb on - strand, within EX31_RS02890at 55.009 kb on - strand, within EX31_RS02890at 55.009 kb on - strand, within EX31_RS02890at 55.016 kb on + strand, within EX31_RS02890at 55.054 kb on + strand, within EX31_RS02890at 55.054 kb on + strand, within EX31_RS02890at 55.055 kb on - strand, within EX31_RS02890at 55.055 kb on - strand, within EX31_RS02890at 55.084 kb on + strand, within EX31_RS02890at 55.084 kb on + strand, within EX31_RS02890at 55.085 kb on - strand, within EX31_RS02890at 55.085 kb on - strand, within EX31_RS02890at 55.085 kb on - strand, within EX31_RS02890at 55.087 kb on + strand, within EX31_RS02890at 55.088 kb on - strand, within EX31_RS02890at 55.111 kb on + strand, within EX31_RS02890at 55.138 kb on + strand, within EX31_RS02890at 55.167 kb on - strand, within EX31_RS02890at 55.183 kb on + strand, within EX31_RS02890at 55.184 kb on - strand, within EX31_RS02890at 55.184 kb on - strand, within EX31_RS02890at 55.185 kb on + strand, within EX31_RS02890at 55.186 kb on - strand, within EX31_RS02890at 55.352 kb on + strand, within EX31_RS02890at 55.378 kb on - strandat 55.379 kb on + strandat 55.381 kb on + strandat 55.382 kb on - strandat 55.411 kb on + strandat 55.531 kb on - strandat 55.553 kb on - strandat 55.577 kb on + strandat 55.578 kb on - strandat 55.583 kb on - strandat 55.634 kb on + strand, within EX31_RS02895at 55.635 kb on - strand, within EX31_RS02895at 55.815 kb on + strand, within EX31_RS02895at 55.835 kb on + strand, within EX31_RS02895at 55.854 kb on + strand, within EX31_RS02895at 55.860 kb on + strand, within EX31_RS02895at 55.860 kb on + strand, within EX31_RS02895at 55.860 kb on + strand, within EX31_RS02895at 55.860 kb on + strand, within EX31_RS02895at 55.860 kb on + strand, within EX31_RS02895at 55.861 kb on - strand, within EX31_RS02895at 55.861 kb on - strand, within EX31_RS02895at 55.861 kb on - strand, within EX31_RS02895at 55.861 kb on - strand, within EX31_RS02895at 55.861 kb on - strand, within EX31_RS02895at 55.862 kb on + strand, within EX31_RS02895at 55.862 kb on + strand, within EX31_RS02895at 55.862 kb on + strand, within EX31_RS02895at 55.862 kb on + strand, within EX31_RS02895at 55.863 kb on - strand, within EX31_RS02895at 55.863 kb on - strand, within EX31_RS02895at 55.863 kb on - strand, within EX31_RS02895at 55.863 kb on - strand, within EX31_RS02895at 55.863 kb on - strand, within EX31_RS02895at 55.863 kb on - strand, within EX31_RS02895at 55.863 kb on - strand, within EX31_RS02895at 55.880 kb on - strand, within EX31_RS02895at 55.880 kb on - strand, within EX31_RS02895at 55.920 kb on + strand, within EX31_RS02895at 55.981 kb on + strand, within EX31_RS02895at 55.981 kb on + strand, within EX31_RS02895at 55.982 kb on - strand, within EX31_RS02895at 56.000 kb on + strand, within EX31_RS02895at 56.000 kb on + strand, within EX31_RS02895at 56.000 kb on + strand, within EX31_RS02895at 56.001 kb on - strand, within EX31_RS02895at 56.001 kb on - strand, within EX31_RS02895at 56.192 kb on - strand, within EX31_RS02895at 56.192 kb on - strand, within EX31_RS02895at 56.192 kb on - strand, within EX31_RS02895at 56.192 kb on - strand, within EX31_RS02895at 56.215 kb on + strand, within EX31_RS02895at 56.258 kb on - strand, within EX31_RS02895at 56.382 kb on + strand, within EX31_RS02895at 56.382 kb on + strand, within EX31_RS02895at 56.383 kb on - strand, within EX31_RS02895at 56.383 kb on - strand, within EX31_RS02895at 56.383 kb on - strand, within EX31_RS02895at 56.383 kb on - strand, within EX31_RS02895at 56.413 kb on + strand, within EX31_RS02895at 56.413 kb on + strand, within EX31_RS02895at 56.414 kb on - strand, within EX31_RS02895at 56.414 kb on - strand, within EX31_RS02895at 56.414 kb on - strand, within EX31_RS02895at 56.417 kb on - strand, within EX31_RS02895at 56.531 kb on - strandat 56.564 kb on + strandat 56.569 kb on - strandat 56.589 kb on - strandat 56.592 kb on + strandat 56.652 kb on - strandat 56.689 kb on - strand, within EX31_RS02900at 56.689 kb on - strand, within EX31_RS02900at 56.762 kb on + strand, within EX31_RS02900at 56.802 kb on + strand, within EX31_RS02900at 56.803 kb on - strand, within EX31_RS02900at 56.803 kb on - strand, within EX31_RS02900at 56.803 kb on - strand, within EX31_RS02900at 56.849 kb on + strand, within EX31_RS02900at 56.901 kb on + strand, within EX31_RS02900at 56.901 kb on + strand, within EX31_RS02900at 56.901 kb on + strand, within EX31_RS02900at 56.905 kb on + strand, within EX31_RS02900at 57.066 kb on + strand, within EX31_RS02900at 57.067 kb on - strand, within EX31_RS02900at 57.111 kb on + strand, within EX31_RS02900at 57.132 kb on - strand, within EX31_RS02900at 57.198 kb on - strand, within EX31_RS02900at 57.362 kb on + strand, within EX31_RS02900at 57.423 kb on - strand, within EX31_RS02900

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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54,551 - EX31_RS02890 0.34 +0.5
54,630 - EX31_RS02890 0.40 +0.5
54,630 - EX31_RS02890 0.40 +0.6
54,633 + EX31_RS02890 0.40 -0.0
54,634 - EX31_RS02890 0.40 +0.6
54,634 - EX31_RS02890 0.40 +1.0
54,743 - EX31_RS02890 0.47 -0.0
54,743 - EX31_RS02890 0.47 +0.9
54,743 - EX31_RS02890 0.47 -2.2
54,746 - EX31_RS02890 0.48 +0.0
54,752 - EX31_RS02890 0.48 -0.9
54,769 - EX31_RS02890 0.49 +0.2
54,799 - EX31_RS02890 0.51 +0.7
54,945 - EX31_RS02890 0.61 +1.3
54,945 - EX31_RS02890 0.61 -0.2
54,983 + EX31_RS02890 0.64 +0.4
54,983 + EX31_RS02890 0.64 +0.8
54,984 - EX31_RS02890 0.64 -0.0
54,984 - EX31_RS02890 0.64 +1.2
55,009 - EX31_RS02890 0.66 -0.1
55,009 - EX31_RS02890 0.66 +0.1
55,009 - EX31_RS02890 0.66 -0.1
55,016 + EX31_RS02890 0.66 +0.8
55,054 + EX31_RS02890 0.69 +2.5
55,054 + EX31_RS02890 0.69 +0.1
55,055 - EX31_RS02890 0.69 -0.5
55,055 - EX31_RS02890 0.69 +0.3
55,084 + EX31_RS02890 0.71 -0.9
55,084 + EX31_RS02890 0.71 +0.1
55,085 - EX31_RS02890 0.71 +0.4
55,085 - EX31_RS02890 0.71 -0.2
55,085 - EX31_RS02890 0.71 -0.7
55,087 + EX31_RS02890 0.71 -2.2
55,088 - EX31_RS02890 0.71 -0.8
55,111 + EX31_RS02890 0.72 +1.1
55,138 + EX31_RS02890 0.74 +0.6
55,167 - EX31_RS02890 0.76 -0.1
55,183 + EX31_RS02890 0.77 +0.5
55,184 - EX31_RS02890 0.77 +0.5
55,184 - EX31_RS02890 0.77 -0.9
55,185 + EX31_RS02890 0.78 -0.5
55,186 - EX31_RS02890 0.78 -0.3
55,352 + EX31_RS02890 0.89 +0.9
55,378 - -0.2
55,379 + +0.3
55,381 + +1.5
55,382 - -0.4
55,411 + -0.4
55,531 - +1.6
55,553 - -0.3
55,577 + +1.3
55,578 - +1.4
55,583 - -0.1
55,634 + EX31_RS02895 0.10 +1.0
55,635 - EX31_RS02895 0.10 +0.2
55,815 + EX31_RS02895 0.28 -0.0
55,835 + EX31_RS02895 0.30 -1.9
55,854 + EX31_RS02895 0.32 +0.3
55,860 + EX31_RS02895 0.32 +0.9
55,860 + EX31_RS02895 0.32 +1.6
55,860 + EX31_RS02895 0.32 +1.4
55,860 + EX31_RS02895 0.32 +1.9
55,860 + EX31_RS02895 0.32 -1.6
55,861 - EX31_RS02895 0.32 -0.4
55,861 - EX31_RS02895 0.32 +0.7
55,861 - EX31_RS02895 0.32 +0.9
55,861 - EX31_RS02895 0.32 +1.1
55,861 - EX31_RS02895 0.32 +0.5
55,862 + EX31_RS02895 0.32 -0.4
55,862 + EX31_RS02895 0.32 +0.5
55,862 + EX31_RS02895 0.32 -0.9
55,862 + EX31_RS02895 0.32 -0.4
55,863 - EX31_RS02895 0.33 +1.8
55,863 - EX31_RS02895 0.33 -0.1
55,863 - EX31_RS02895 0.33 -0.0
55,863 - EX31_RS02895 0.33 +0.8
55,863 - EX31_RS02895 0.33 +1.1
55,863 - EX31_RS02895 0.33 +0.2
55,863 - EX31_RS02895 0.33 -1.0
55,880 - EX31_RS02895 0.34 +0.5
55,880 - EX31_RS02895 0.34 +0.2
55,920 + EX31_RS02895 0.38 -0.2
55,981 + EX31_RS02895 0.44 -0.9
55,981 + EX31_RS02895 0.44 +0.2
55,982 - EX31_RS02895 0.44 +0.2
56,000 + EX31_RS02895 0.46 -1.3
56,000 + EX31_RS02895 0.46 +0.5
56,000 + EX31_RS02895 0.46 -0.2
56,001 - EX31_RS02895 0.46 +0.3
56,001 - EX31_RS02895 0.46 -0.6
56,192 - EX31_RS02895 0.65 +0.5
56,192 - EX31_RS02895 0.65 -0.6
56,192 - EX31_RS02895 0.65 -0.2
56,192 - EX31_RS02895 0.65 -1.8
56,215 + EX31_RS02895 0.67 +0.1
56,258 - EX31_RS02895 0.71 +0.3
56,382 + EX31_RS02895 0.84 -0.2
56,382 + EX31_RS02895 0.84 -0.4
56,383 - EX31_RS02895 0.84 -0.5
56,383 - EX31_RS02895 0.84 -1.0
56,383 - EX31_RS02895 0.84 -0.1
56,383 - EX31_RS02895 0.84 +1.7
56,413 + EX31_RS02895 0.87 +0.7
56,413 + EX31_RS02895 0.87 +0.9
56,414 - EX31_RS02895 0.87 +0.8
56,414 - EX31_RS02895 0.87 -0.4
56,414 - EX31_RS02895 0.87 +2.1
56,417 - EX31_RS02895 0.87 +1.5
56,531 - +0.4
56,564 + -0.2
56,569 - +0.9
56,589 - -1.0
56,592 + +0.3
56,652 - -0.5
56,689 - EX31_RS02900 0.11 +0.7
56,689 - EX31_RS02900 0.11 -1.2
56,762 + EX31_RS02900 0.17 +0.1
56,802 + EX31_RS02900 0.20 -0.2
56,803 - EX31_RS02900 0.20 -0.6
56,803 - EX31_RS02900 0.20 +0.8
56,803 - EX31_RS02900 0.20 -0.2
56,849 + EX31_RS02900 0.24 -0.9
56,901 + EX31_RS02900 0.28 -0.2
56,901 + EX31_RS02900 0.28 +0.5
56,901 + EX31_RS02900 0.28 +0.7
56,905 + EX31_RS02900 0.28 +1.5
57,066 + EX31_RS02900 0.41 -0.1
57,067 - EX31_RS02900 0.41 +0.5
57,111 + EX31_RS02900 0.45 -1.0
57,132 - EX31_RS02900 0.47 -1.9
57,198 - EX31_RS02900 0.52 +1.1
57,362 + EX31_RS02900 0.65 +1.5
57,423 - EX31_RS02900 0.70 +0.6

Or see this region's nucleotide sequence