Strain Fitness in Rahnella sp. WP5 around EX31_RS02515

Experiment: Ammonium chloride (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02505 and EX31_RS02510 are separated by 9 nucleotidesEX31_RS02510 and EX31_RS02515 overlap by 44 nucleotidesEX31_RS02515 and EX31_RS02520 overlap by 8 nucleotides EX31_RS02505: EX31_RS02505 - hypothetical protein, at 531,112 to 531,768 _RS02505 EX31_RS02510: EX31_RS02510 - 4'-phosphopantetheinyl transferase superfamily protein, at 531,778 to 532,467 _RS02510 EX31_RS02515: EX31_RS02515 - PAS domain-containing protein, at 532,424 to 533,737 _RS02515 EX31_RS02520: EX31_RS02520 - sigma-54-dependent Fis family transcriptional regulator, at 533,730 to 535,142 _RS02520 Position (kb) 532 533 534Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 531.608 kb on + strand, within EX31_RS02505at 531.608 kb on + strand, within EX31_RS02505at 531.608 kb on + strand, within EX31_RS02505at 531.609 kb on - strand, within EX31_RS02505at 531.645 kb on + strand, within EX31_RS02505at 531.799 kb on - strandat 531.860 kb on + strand, within EX31_RS02510at 531.860 kb on + strand, within EX31_RS02510at 531.892 kb on + strand, within EX31_RS02510at 531.892 kb on + strand, within EX31_RS02510at 531.893 kb on - strand, within EX31_RS02510at 531.893 kb on - strand, within EX31_RS02510at 531.893 kb on - strand, within EX31_RS02510at 531.913 kb on - strand, within EX31_RS02510at 531.925 kb on + strand, within EX31_RS02510at 531.925 kb on + strand, within EX31_RS02510at 531.925 kb on + strand, within EX31_RS02510at 531.981 kb on + strand, within EX31_RS02510at 531.982 kb on - strand, within EX31_RS02510at 532.211 kb on - strand, within EX31_RS02510at 532.276 kb on + strand, within EX31_RS02510at 532.276 kb on + strand, within EX31_RS02510at 532.276 kb on + strand, within EX31_RS02510at 532.277 kb on - strand, within EX31_RS02510at 532.277 kb on - strand, within EX31_RS02510at 532.277 kb on - strand, within EX31_RS02510at 532.558 kb on + strand, within EX31_RS02515at 532.561 kb on - strand, within EX31_RS02515at 532.654 kb on + strand, within EX31_RS02515at 533.021 kb on + strand, within EX31_RS02515at 533.135 kb on - strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.137 kb on - strand, within EX31_RS02515at 533.137 kb on - strand, within EX31_RS02515at 533.137 kb on - strand, within EX31_RS02515at 533.137 kb on - strand, within EX31_RS02515at 533.137 kb on - strand, within EX31_RS02515at 533.155 kb on + strand, within EX31_RS02515at 533.156 kb on - strand, within EX31_RS02515at 533.156 kb on - strand, within EX31_RS02515at 533.156 kb on - strand, within EX31_RS02515at 533.302 kb on + strand, within EX31_RS02515at 533.303 kb on - strand, within EX31_RS02515at 533.303 kb on - strand, within EX31_RS02515at 533.414 kb on + strand, within EX31_RS02515at 533.622 kb on + strandat 533.696 kb on + strandat 533.697 kb on - strandat 533.697 kb on - strandat 533.697 kb on - strandat 533.699 kb on + strandat 533.700 kb on - strandat 533.824 kb on + strandat 534.092 kb on + strand, within EX31_RS02520at 534.097 kb on + strand, within EX31_RS02520at 534.098 kb on - strand, within EX31_RS02520at 534.098 kb on - strand, within EX31_RS02520at 534.143 kb on + strand, within EX31_RS02520at 534.388 kb on - strand, within EX31_RS02520at 534.388 kb on - strand, within EX31_RS02520at 534.388 kb on - strand, within EX31_RS02520at 534.555 kb on - strand, within EX31_RS02520at 534.557 kb on - strand, within EX31_RS02520at 534.645 kb on + strand, within EX31_RS02520

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking
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531,608 + EX31_RS02505 0.75 +1.1
531,608 + EX31_RS02505 0.75 -0.4
531,608 + EX31_RS02505 0.75 +0.5
531,609 - EX31_RS02505 0.76 +1.1
531,645 + EX31_RS02505 0.81 -0.5
531,799 - -1.5
531,860 + EX31_RS02510 0.12 -1.2
531,860 + EX31_RS02510 0.12 +0.5
531,892 + EX31_RS02510 0.17 -0.6
531,892 + EX31_RS02510 0.17 +0.3
531,893 - EX31_RS02510 0.17 -0.7
531,893 - EX31_RS02510 0.17 -1.4
531,893 - EX31_RS02510 0.17 +1.1
531,913 - EX31_RS02510 0.20 -1.5
531,925 + EX31_RS02510 0.21 -0.1
531,925 + EX31_RS02510 0.21 -0.8
531,925 + EX31_RS02510 0.21 -0.4
531,981 + EX31_RS02510 0.29 +0.8
531,982 - EX31_RS02510 0.30 -0.1
532,211 - EX31_RS02510 0.63 +0.3
532,276 + EX31_RS02510 0.72 +0.3
532,276 + EX31_RS02510 0.72 +0.9
532,276 + EX31_RS02510 0.72 -0.1
532,277 - EX31_RS02510 0.72 -1.4
532,277 - EX31_RS02510 0.72 -0.2
532,277 - EX31_RS02510 0.72 +0.3
532,558 + EX31_RS02515 0.10 -2.5
532,561 - EX31_RS02515 0.10 -1.9
532,654 + EX31_RS02515 0.18 -1.7
533,021 + EX31_RS02515 0.45 -0.7
533,135 - EX31_RS02515 0.54 -2.0
533,136 + EX31_RS02515 0.54 -0.8
533,136 + EX31_RS02515 0.54 -2.6
533,136 + EX31_RS02515 0.54 -1.8
533,136 + EX31_RS02515 0.54 -1.3
533,136 + EX31_RS02515 0.54 -0.9
533,136 + EX31_RS02515 0.54 -1.5
533,137 - EX31_RS02515 0.54 -1.3
533,137 - EX31_RS02515 0.54 -1.1
533,137 - EX31_RS02515 0.54 -3.3
533,137 - EX31_RS02515 0.54 -2.3
533,137 - EX31_RS02515 0.54 -2.5
533,155 + EX31_RS02515 0.56 -2.8
533,156 - EX31_RS02515 0.56 -0.7
533,156 - EX31_RS02515 0.56 -2.0
533,156 - EX31_RS02515 0.56 -1.8
533,302 + EX31_RS02515 0.67 -2.7
533,303 - EX31_RS02515 0.67 -2.4
533,303 - EX31_RS02515 0.67 -1.3
533,414 + EX31_RS02515 0.75 -3.8
533,622 + -2.5
533,696 + -2.3
533,697 - -2.4
533,697 - -0.1
533,697 - -1.7
533,699 + -1.1
533,700 - -1.7
533,824 + -1.5
534,092 + EX31_RS02520 0.26 -1.8
534,097 + EX31_RS02520 0.26 -1.7
534,098 - EX31_RS02520 0.26 -3.7
534,098 - EX31_RS02520 0.26 -1.7
534,143 + EX31_RS02520 0.29 -2.8
534,388 - EX31_RS02520 0.47 -2.1
534,388 - EX31_RS02520 0.47 -1.9
534,388 - EX31_RS02520 0.47 -1.4
534,555 - EX31_RS02520 0.58 -2.7
534,557 - EX31_RS02520 0.59 -2.3
534,645 + EX31_RS02520 0.65 -1.8

Or see this region's nucleotide sequence