Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4279

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4277 and Ac3H11_4278 overlap by 4 nucleotidesAc3H11_4278 and Ac3H11_4279 are separated by 68 nucleotidesAc3H11_4279 and Ac3H11_4280 overlap by 41 nucleotidesAc3H11_4280 and Ac3H11_4281 are separated by 75 nucleotides Ac3H11_4277 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 53,909 to 55,114 _4277 Ac3H11_4278 - Methionine biosynthesis protein MetW, at 55,111 to 55,695 _4278 Ac3H11_4279 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 55,764 to 56,918 _4279 Ac3H11_4280 - NAD(P)H dehydrogenase, quinone family, at 56,878 to 57,546 _4280 Ac3H11_4281 - Transcriptional regulator, MerR family, at 57,622 to 58,071 _4281 Position (kb) 55 56 57Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 54.794 kb on + strand, within Ac3H11_4277at 54.795 kb on - strand, within Ac3H11_4277at 54.812 kb on + strand, within Ac3H11_4277at 54.812 kb on + strand, within Ac3H11_4277at 54.812 kb on + strand, within Ac3H11_4277at 54.812 kb on + strand, within Ac3H11_4277at 54.813 kb on - strand, within Ac3H11_4277at 54.813 kb on - strand, within Ac3H11_4277at 54.813 kb on - strand, within Ac3H11_4277at 54.813 kb on - strand, within Ac3H11_4277at 54.813 kb on - strand, within Ac3H11_4277at 54.813 kb on - strand, within Ac3H11_4277at 54.839 kb on + strand, within Ac3H11_4277at 54.839 kb on + strand, within Ac3H11_4277at 54.839 kb on + strand, within Ac3H11_4277at 54.840 kb on - strand, within Ac3H11_4277at 54.840 kb on - strand, within Ac3H11_4277at 54.840 kb on - strand, within Ac3H11_4277at 54.840 kb on - strand, within Ac3H11_4277at 54.840 kb on - strand, within Ac3H11_4277at 55.001 kb on + strandat 55.001 kb on + strandat 55.002 kb on - strandat 55.002 kb on - strandat 55.058 kb on + strandat 55.059 kb on - strandat 55.059 kb on - strandat 55.207 kb on + strand, within Ac3H11_4278at 55.207 kb on + strand, within Ac3H11_4278at 55.207 kb on + strand, within Ac3H11_4278at 55.208 kb on - strand, within Ac3H11_4278at 55.208 kb on - strand, within Ac3H11_4278at 55.208 kb on - strand, within Ac3H11_4278at 55.208 kb on - strand, within Ac3H11_4278at 55.519 kb on + strand, within Ac3H11_4278at 55.529 kb on - strand, within Ac3H11_4278at 55.529 kb on - strand, within Ac3H11_4278at 55.554 kb on + strand, within Ac3H11_4278at 55.554 kb on + strand, within Ac3H11_4278at 55.554 kb on + strand, within Ac3H11_4278at 55.555 kb on - strand, within Ac3H11_4278at 55.558 kb on + strand, within Ac3H11_4278at 55.558 kb on + strand, within Ac3H11_4278at 55.558 kb on + strand, within Ac3H11_4278at 55.558 kb on + strand, within Ac3H11_4278at 55.558 kb on + strand, within Ac3H11_4278at 55.558 kb on + strand, within Ac3H11_4278at 55.558 kb on + strand, within Ac3H11_4278at 55.558 kb on + strand, within Ac3H11_4278at 55.558 kb on + strand, within Ac3H11_4278at 55.558 kb on + strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.559 kb on - strand, within Ac3H11_4278at 55.694 kb on - strandat 55.694 kb on - strandat 55.694 kb on - strandat 55.694 kb on - strandat 56.118 kb on - strand, within Ac3H11_4279at 56.211 kb on + strand, within Ac3H11_4279at 56.211 kb on + strand, within Ac3H11_4279at 56.211 kb on + strand, within Ac3H11_4279at 56.211 kb on + strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.301 kb on + strand, within Ac3H11_4279at 56.301 kb on + strand, within Ac3H11_4279at 56.301 kb on + strand, within Ac3H11_4279at 56.302 kb on - strand, within Ac3H11_4279at 56.302 kb on - strand, within Ac3H11_4279at 56.325 kb on + strand, within Ac3H11_4279at 56.325 kb on + strand, within Ac3H11_4279at 56.325 kb on + strand, within Ac3H11_4279at 56.325 kb on + strand, within Ac3H11_4279at 56.326 kb on - strand, within Ac3H11_4279at 56.326 kb on - strand, within Ac3H11_4279at 56.326 kb on - strand, within Ac3H11_4279at 56.326 kb on - strand, within Ac3H11_4279at 56.326 kb on - strand, within Ac3H11_4279at 56.505 kb on + strand, within Ac3H11_4279at 56.544 kb on + strand, within Ac3H11_4279at 56.544 kb on + strand, within Ac3H11_4279at 56.544 kb on + strand, within Ac3H11_4279at 56.545 kb on - strand, within Ac3H11_4279at 56.586 kb on - strand, within Ac3H11_4279at 56.586 kb on - strand, within Ac3H11_4279at 56.586 kb on - strand, within Ac3H11_4279at 56.589 kb on + strand, within Ac3H11_4279at 56.589 kb on + strand, within Ac3H11_4279at 56.589 kb on + strand, within Ac3H11_4279at 56.590 kb on - strand, within Ac3H11_4279at 56.590 kb on - strand, within Ac3H11_4279at 56.808 kb on + strandat 56.808 kb on + strandat 56.808 kb on + strandat 56.809 kb on - strandat 56.809 kb on - strandat 56.809 kb on - strandat 56.809 kb on - strandat 56.809 kb on - strandat 56.809 kb on - strandat 57.140 kb on + strand, within Ac3H11_4280at 57.141 kb on - strand, within Ac3H11_4280at 57.224 kb on + strand, within Ac3H11_4280at 57.224 kb on + strand, within Ac3H11_4280at 57.224 kb on + strand, within Ac3H11_4280at 57.225 kb on - strand, within Ac3H11_4280at 57.305 kb on + strand, within Ac3H11_4280at 57.306 kb on - strand, within Ac3H11_4280at 57.386 kb on + strand, within Ac3H11_4280at 57.471 kb on - strand, within Ac3H11_4280

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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54,794 + Ac3H11_4277 0.73 -3.3
54,795 - Ac3H11_4277 0.73 -3.8
54,812 + Ac3H11_4277 0.75 -2.4
54,812 + Ac3H11_4277 0.75 -3.0
54,812 + Ac3H11_4277 0.75 -2.3
54,812 + Ac3H11_4277 0.75 -3.7
54,813 - Ac3H11_4277 0.75 -2.9
54,813 - Ac3H11_4277 0.75 -3.6
54,813 - Ac3H11_4277 0.75 -2.0
54,813 - Ac3H11_4277 0.75 -2.1
54,813 - Ac3H11_4277 0.75 -3.3
54,813 - Ac3H11_4277 0.75 -2.6
54,839 + Ac3H11_4277 0.77 -3.1
54,839 + Ac3H11_4277 0.77 -3.2
54,839 + Ac3H11_4277 0.77 -4.0
54,840 - Ac3H11_4277 0.77 -3.2
54,840 - Ac3H11_4277 0.77 -1.9
54,840 - Ac3H11_4277 0.77 -1.2
54,840 - Ac3H11_4277 0.77 -2.7
54,840 - Ac3H11_4277 0.77 -4.0
55,001 + -2.7
55,001 + -2.6
55,002 - -3.6
55,002 - -1.2
55,058 + -2.7
55,059 - -2.4
55,059 - +1.8
55,207 + Ac3H11_4278 0.16 -0.6
55,207 + Ac3H11_4278 0.16 -1.7
55,207 + Ac3H11_4278 0.16 -2.0
55,208 - Ac3H11_4278 0.17 -3.5
55,208 - Ac3H11_4278 0.17 -1.0
55,208 - Ac3H11_4278 0.17 -4.2
55,208 - Ac3H11_4278 0.17 -3.9
55,519 + Ac3H11_4278 0.70 -2.5
55,529 - Ac3H11_4278 0.71 -2.7
55,529 - Ac3H11_4278 0.71 -0.6
55,554 + Ac3H11_4278 0.76 -2.3
55,554 + Ac3H11_4278 0.76 -0.5
55,554 + Ac3H11_4278 0.76 -3.3
55,555 - Ac3H11_4278 0.76 -3.6
55,558 + Ac3H11_4278 0.76 -3.7
55,558 + Ac3H11_4278 0.76 -2.5
55,558 + Ac3H11_4278 0.76 -1.2
55,558 + Ac3H11_4278 0.76 -2.5
55,558 + Ac3H11_4278 0.76 -2.9
55,558 + Ac3H11_4278 0.76 -4.2
55,558 + Ac3H11_4278 0.76 -1.6
55,558 + Ac3H11_4278 0.76 -1.2
55,558 + Ac3H11_4278 0.76 -1.4
55,558 + Ac3H11_4278 0.76 -3.0
55,559 - Ac3H11_4278 0.77 -3.9
55,559 - Ac3H11_4278 0.77 -3.3
55,559 - Ac3H11_4278 0.77 -3.7
55,559 - Ac3H11_4278 0.77 -3.6
55,559 - Ac3H11_4278 0.77 -4.7
55,559 - Ac3H11_4278 0.77 -3.3
55,559 - Ac3H11_4278 0.77 -3.8
55,559 - Ac3H11_4278 0.77 -2.4
55,559 - Ac3H11_4278 0.77 -3.7
55,559 - Ac3H11_4278 0.77 -3.3
55,559 - Ac3H11_4278 0.77 -2.0
55,559 - Ac3H11_4278 0.77 -2.1
55,559 - Ac3H11_4278 0.77 -3.2
55,694 - -0.1
55,694 - -0.9
55,694 - +0.8
55,694 - +0.1
56,118 - Ac3H11_4279 0.31 -0.3
56,211 + Ac3H11_4279 0.39 -1.4
56,211 + Ac3H11_4279 0.39 +0.7
56,211 + Ac3H11_4279 0.39 +1.1
56,211 + Ac3H11_4279 0.39 -1.2
56,212 - Ac3H11_4279 0.39 +0.2
56,212 - Ac3H11_4279 0.39 -0.6
56,212 - Ac3H11_4279 0.39 -2.3
56,212 - Ac3H11_4279 0.39 -0.1
56,212 - Ac3H11_4279 0.39 -0.0
56,212 - Ac3H11_4279 0.39 +0.3
56,212 - Ac3H11_4279 0.39 -0.3
56,212 - Ac3H11_4279 0.39 +1.2
56,301 + Ac3H11_4279 0.46 -0.6
56,301 + Ac3H11_4279 0.46 -1.9
56,301 + Ac3H11_4279 0.46 -0.1
56,302 - Ac3H11_4279 0.47 +0.2
56,302 - Ac3H11_4279 0.47 -0.2
56,325 + Ac3H11_4279 0.49 -1.4
56,325 + Ac3H11_4279 0.49 -0.1
56,325 + Ac3H11_4279 0.49 -0.3
56,325 + Ac3H11_4279 0.49 +0.2
56,326 - Ac3H11_4279 0.49 -0.5
56,326 - Ac3H11_4279 0.49 -1.1
56,326 - Ac3H11_4279 0.49 -0.1
56,326 - Ac3H11_4279 0.49 +1.3
56,326 - Ac3H11_4279 0.49 +0.5
56,505 + Ac3H11_4279 0.64 +0.7
56,544 + Ac3H11_4279 0.68 -0.3
56,544 + Ac3H11_4279 0.68 -0.9
56,544 + Ac3H11_4279 0.68 -1.4
56,545 - Ac3H11_4279 0.68 +0.1
56,586 - Ac3H11_4279 0.71 -1.0
56,586 - Ac3H11_4279 0.71 -0.5
56,586 - Ac3H11_4279 0.71 +0.4
56,589 + Ac3H11_4279 0.71 -0.2
56,589 + Ac3H11_4279 0.71 +0.6
56,589 + Ac3H11_4279 0.71 +0.1
56,590 - Ac3H11_4279 0.72 -0.0
56,590 - Ac3H11_4279 0.72 +0.5
56,808 + -0.4
56,808 + -0.8
56,808 + +0.1
56,809 - -0.3
56,809 - -0.5
56,809 - -0.1
56,809 - +0.6
56,809 - -0.2
56,809 - -0.6
57,140 + Ac3H11_4280 0.39 -0.3
57,141 - Ac3H11_4280 0.39 -0.3
57,224 + Ac3H11_4280 0.52 -1.6
57,224 + Ac3H11_4280 0.52 +0.4
57,224 + Ac3H11_4280 0.52 -0.4
57,225 - Ac3H11_4280 0.52 -1.2
57,305 + Ac3H11_4280 0.64 -0.4
57,306 - Ac3H11_4280 0.64 +0.4
57,386 + Ac3H11_4280 0.76 +0.4
57,471 - Ac3H11_4280 0.89 -0.5

Or see this region's nucleotide sequence