Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4036

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4034 and Ac3H11_4035 are separated by 284 nucleotidesAc3H11_4035 and Ac3H11_4036 are separated by 54 nucleotidesAc3H11_4036 and Ac3H11_4037 are separated by 80 nucleotidesAc3H11_4037 and Ac3H11_4038 are separated by 101 nucleotides Ac3H11_4034 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 275,430 to 276,551 _4034 Ac3H11_4035 - FIG00347448: hypothetical protein, at 276,836 to 277,423 _4035 Ac3H11_4036 - TldD protein, part of TldE/TldD proteolytic complex, at 277,478 to 278,962 _4036 Ac3H11_4037 - hypothetical protein, at 279,043 to 279,384 _4037 Ac3H11_4038 - Rod shape-determining protein RodA, at 279,486 to 280,658 _4038 Position (kb) 277 278 279Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 276.642 kb on + strandat 276.643 kb on - strandat 276.698 kb on - strandat 276.698 kb on - strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.745 kb on + strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.746 kb on - strandat 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.939 kb on + strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.940 kb on - strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.943 kb on + strand, within Ac3H11_4035at 276.944 kb on - strand, within Ac3H11_4035at 276.944 kb on - strand, within Ac3H11_4035at 276.944 kb on - strand, within Ac3H11_4035at 276.944 kb on - strand, within Ac3H11_4035at 276.944 kb on - strand, within Ac3H11_4035at 276.944 kb on - strand, within Ac3H11_4035at 276.944 kb on - strand, within Ac3H11_4035at 276.944 kb on - strand, within Ac3H11_4035at 276.944 kb on - strand, within Ac3H11_4035at 277.089 kb on + strand, within Ac3H11_4035at 277.089 kb on + strand, within Ac3H11_4035at 277.090 kb on - strand, within Ac3H11_4035at 277.104 kb on + strand, within Ac3H11_4035at 277.104 kb on + strand, within Ac3H11_4035at 277.104 kb on + strand, within Ac3H11_4035at 277.104 kb on + strand, within Ac3H11_4035at 277.104 kb on + strand, within Ac3H11_4035at 277.105 kb on - strand, within Ac3H11_4035at 277.105 kb on - strand, within Ac3H11_4035at 277.105 kb on - strand, within Ac3H11_4035at 277.105 kb on - strand, within Ac3H11_4035at 277.692 kb on + strand, within Ac3H11_4036at 277.692 kb on + strand, within Ac3H11_4036at 277.692 kb on + strand, within Ac3H11_4036at 277.764 kb on + strand, within Ac3H11_4036at 277.764 kb on + strand, within Ac3H11_4036at 277.765 kb on - strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.824 kb on + strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.825 kb on - strand, within Ac3H11_4036at 277.860 kb on + strand, within Ac3H11_4036at 277.860 kb on + strand, within Ac3H11_4036at 277.861 kb on - strand, within Ac3H11_4036at 277.861 kb on - strand, within Ac3H11_4036at 277.861 kb on - strand, within Ac3H11_4036at 277.861 kb on - strand, within Ac3H11_4036at 277.861 kb on - strand, within Ac3H11_4036at 277.861 kb on - strand, within Ac3H11_4036at 277.929 kb on + strand, within Ac3H11_4036at 277.929 kb on + strand, within Ac3H11_4036at 277.929 kb on + strand, within Ac3H11_4036at 277.929 kb on + strand, within Ac3H11_4036at 277.929 kb on + strand, within Ac3H11_4036at 277.930 kb on - strandat 277.930 kb on - strand, within Ac3H11_4036at 278.247 kb on + strand, within Ac3H11_4036at 278.247 kb on + strand, within Ac3H11_4036at 278.247 kb on + strand, within Ac3H11_4036at 278.247 kb on + strand, within Ac3H11_4036at 278.247 kb on + strand, within Ac3H11_4036at 278.248 kb on - strand, within Ac3H11_4036at 278.248 kb on - strand, within Ac3H11_4036at 278.248 kb on - strand, within Ac3H11_4036at 278.248 kb on - strandat 278.248 kb on - strand, within Ac3H11_4036at 278.274 kb on + strand, within Ac3H11_4036at 278.274 kb on + strand, within Ac3H11_4036at 278.275 kb on - strand, within Ac3H11_4036at 278.421 kb on + strand, within Ac3H11_4036at 278.422 kb on - strand, within Ac3H11_4036at 278.422 kb on - strand, within Ac3H11_4036at 278.422 kb on - strand, within Ac3H11_4036at 278.676 kb on + strand, within Ac3H11_4036at 278.677 kb on - strand, within Ac3H11_4036at 278.677 kb on - strand, within Ac3H11_4036at 278.790 kb on + strand, within Ac3H11_4036at 278.790 kb on + strand, within Ac3H11_4036at 278.790 kb on + strand, within Ac3H11_4036at 278.799 kb on + strand, within Ac3H11_4036at 278.800 kb on - strand, within Ac3H11_4036at 278.800 kb on - strand, within Ac3H11_4036at 278.800 kb on - strand, within Ac3H11_4036at 278.973 kb on + strandat 279.134 kb on + strand, within Ac3H11_4037at 279.134 kb on + strand, within Ac3H11_4037at 279.134 kb on + strand, within Ac3H11_4037at 279.134 kb on + strand, within Ac3H11_4037at 279.134 kb on + strand, within Ac3H11_4037at 279.134 kb on + strand, within Ac3H11_4037at 279.134 kb on + strand, within Ac3H11_4037at 279.135 kb on - strand, within Ac3H11_4037at 279.135 kb on - strand, within Ac3H11_4037at 279.135 kb on - strand, within Ac3H11_4037at 279.185 kb on + strand, within Ac3H11_4037at 279.185 kb on + strand, within Ac3H11_4037at 279.185 kb on + strand, within Ac3H11_4037at 279.185 kb on + strand, within Ac3H11_4037at 279.186 kb on - strand, within Ac3H11_4037at 279.287 kb on + strand, within Ac3H11_4037at 279.287 kb on + strand, within Ac3H11_4037at 279.287 kb on + strand, within Ac3H11_4037at 279.287 kb on + strand, within Ac3H11_4037at 279.287 kb on + strand, within Ac3H11_4037at 279.287 kb on + strand, within Ac3H11_4037at 279.287 kb on + strand, within Ac3H11_4037at 279.287 kb on + strand, within Ac3H11_4037at 279.287 kb on + strand, within Ac3H11_4037at 279.287 kb on + strand, within Ac3H11_4037at 279.288 kb on - strand, within Ac3H11_4037at 279.288 kb on - strand, within Ac3H11_4037at 279.288 kb on - strand, within Ac3H11_4037at 279.288 kb on - strand, within Ac3H11_4037at 279.288 kb on - strand, within Ac3H11_4037at 279.288 kb on - strand, within Ac3H11_4037at 279.288 kb on - strand, within Ac3H11_4037at 279.390 kb on + strandat 279.390 kb on + strandat 279.390 kb on + strandat 279.390 kb on + strandat 279.390 kb on + strandat 279.391 kb on - strandat 279.391 kb on - strandat 279.431 kb on + strandat 279.487 kb on + strandat 279.487 kb on + strandat 279.487 kb on + strandat 279.487 kb on + strandat 279.487 kb on + strandat 279.487 kb on + strandat 279.487 kb on + strandat 279.487 kb on + strandat 279.487 kb on + strandat 279.487 kb on + strandat 279.487 kb on + strandat 279.488 kb on - strandat 279.488 kb on - strandat 279.488 kb on - strandat 279.488 kb on - strandat 279.488 kb on - strandat 279.488 kb on - strandat 279.488 kb on - strandat 279.488 kb on - strandat 279.488 kb on - strandat 279.488 kb on - strandat 279.490 kb on - strandat 279.490 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
276,642 + -1.8
276,643 - -1.5
276,698 - -0.3
276,698 - +0.1
276,745 + -2.3
276,745 + -2.3
276,745 + -3.7
276,745 + -1.0
276,745 + -2.4
276,745 + -1.2
276,745 + +0.1
276,745 + -1.5
276,745 + -2.7
276,745 + -1.2
276,745 + -1.9
276,745 + -1.5
276,745 + -1.5
276,746 - -1.6
276,746 - +0.3
276,746 - -0.5
276,746 - +0.0
276,746 - +0.4
276,746 - -1.2
276,746 - -0.3
276,746 - -0.4
276,746 - +0.7
276,746 - -0.4
276,746 - -0.7
276,746 - -0.6
276,746 - -0.2
276,746 - +0.2
276,746 - +0.4
276,746 - +0.8
276,746 - +0.2
276,939 + Ac3H11_4035 0.18 -0.7
276,939 + Ac3H11_4035 0.18 -0.5
276,939 + Ac3H11_4035 0.18 +0.2
276,939 + Ac3H11_4035 0.18 -2.1
276,939 + Ac3H11_4035 0.18 +0.1
276,939 + Ac3H11_4035 0.18 +1.8
276,939 + Ac3H11_4035 0.18 -0.2
276,939 + Ac3H11_4035 0.18 -0.1
276,939 + Ac3H11_4035 0.18 -0.2
276,939 + Ac3H11_4035 0.18 -1.0
276,939 + Ac3H11_4035 0.18 +0.7
276,939 + Ac3H11_4035 0.18 +0.3
276,939 + Ac3H11_4035 0.18 +1.4
276,940 - Ac3H11_4035 0.18 -0.3
276,940 - Ac3H11_4035 0.18 +1.9
276,940 - Ac3H11_4035 0.18 +1.1
276,940 - Ac3H11_4035 0.18 -0.6
276,940 - Ac3H11_4035 0.18 +0.2
276,940 - Ac3H11_4035 0.18 -0.7
276,940 - Ac3H11_4035 0.18 -0.3
276,940 - Ac3H11_4035 0.18 -0.1
276,940 - Ac3H11_4035 0.18 +0.3
276,940 - Ac3H11_4035 0.18 +0.6
276,940 - Ac3H11_4035 0.18 +0.9
276,940 - Ac3H11_4035 0.18 +0.0
276,940 - Ac3H11_4035 0.18 +0.6
276,940 - Ac3H11_4035 0.18 +1.9
276,940 - Ac3H11_4035 0.18 -1.0
276,940 - Ac3H11_4035 0.18 +1.1
276,940 - Ac3H11_4035 0.18 +0.5
276,943 + Ac3H11_4035 0.18 +0.2
276,943 + Ac3H11_4035 0.18 -1.0
276,943 + Ac3H11_4035 0.18 -0.1
276,943 + Ac3H11_4035 0.18 +0.9
276,943 + Ac3H11_4035 0.18 +0.7
276,943 + Ac3H11_4035 0.18 +0.8
276,943 + Ac3H11_4035 0.18 -1.3
276,943 + Ac3H11_4035 0.18 -0.9
276,943 + Ac3H11_4035 0.18 -1.1
276,943 + Ac3H11_4035 0.18 -0.1
276,943 + Ac3H11_4035 0.18 +0.4
276,943 + Ac3H11_4035 0.18 +5.6
276,943 + Ac3H11_4035 0.18 +0.0
276,944 - Ac3H11_4035 0.18 -0.2
276,944 - Ac3H11_4035 0.18 +0.9
276,944 - Ac3H11_4035 0.18 -0.2
276,944 - Ac3H11_4035 0.18 +0.9
276,944 - Ac3H11_4035 0.18 -0.9
276,944 - Ac3H11_4035 0.18 -1.1
276,944 - Ac3H11_4035 0.18 -0.1
276,944 - Ac3H11_4035 0.18 -0.8
276,944 - Ac3H11_4035 0.18 +0.3
277,089 + Ac3H11_4035 0.43 +0.2
277,089 + Ac3H11_4035 0.43 -0.3
277,090 - Ac3H11_4035 0.43 +0.7
277,104 + Ac3H11_4035 0.46 -0.4
277,104 + Ac3H11_4035 0.46 -1.0
277,104 + Ac3H11_4035 0.46 +0.0
277,104 + Ac3H11_4035 0.46 +1.5
277,104 + Ac3H11_4035 0.46 -0.8
277,105 - Ac3H11_4035 0.46 +0.1
277,105 - Ac3H11_4035 0.46 +0.0
277,105 - Ac3H11_4035 0.46 +0.5
277,105 - Ac3H11_4035 0.46 -0.4
277,692 + Ac3H11_4036 0.14 -0.4
277,692 + Ac3H11_4036 0.14 -0.4
277,692 + Ac3H11_4036 0.14 -1.8
277,764 + Ac3H11_4036 0.19 -0.0
277,764 + Ac3H11_4036 0.19 +0.5
277,765 - Ac3H11_4036 0.19 -1.9
277,824 + Ac3H11_4036 0.23 -1.1
277,824 + Ac3H11_4036 0.23 +1.0
277,824 + Ac3H11_4036 0.23 +0.5
277,824 + Ac3H11_4036 0.23 +0.0
277,824 + Ac3H11_4036 0.23 +1.0
277,824 + Ac3H11_4036 0.23 -1.3
277,824 + Ac3H11_4036 0.23 -1.0
277,824 + Ac3H11_4036 0.23 -1.4
277,824 + Ac3H11_4036 0.23 +0.4
277,824 + Ac3H11_4036 0.23 +0.4
277,824 + Ac3H11_4036 0.23 +0.1
277,824 + Ac3H11_4036 0.23 +1.3
277,824 + Ac3H11_4036 0.23 -0.7
277,824 + Ac3H11_4036 0.23 +0.8
277,825 - Ac3H11_4036 0.23 +0.1
277,825 - Ac3H11_4036 0.23 -0.8
277,825 - Ac3H11_4036 0.23 -0.1
277,825 - Ac3H11_4036 0.23 -0.5
277,825 - Ac3H11_4036 0.23 +0.1
277,825 - Ac3H11_4036 0.23 -0.4
277,825 - Ac3H11_4036 0.23 -0.5
277,825 - Ac3H11_4036 0.23 -0.1
277,825 - Ac3H11_4036 0.23 -0.5
277,825 - Ac3H11_4036 0.23 +0.9
277,825 - Ac3H11_4036 0.23 -1.5
277,825 - Ac3H11_4036 0.23 +0.1
277,825 - Ac3H11_4036 0.23 -2.2
277,825 - Ac3H11_4036 0.23 +1.6
277,860 + Ac3H11_4036 0.26 +0.3
277,860 + Ac3H11_4036 0.26 +0.3
277,861 - Ac3H11_4036 0.26 -0.1
277,861 - Ac3H11_4036 0.26 -0.5
277,861 - Ac3H11_4036 0.26 -1.7
277,861 - Ac3H11_4036 0.26 -0.5
277,861 - Ac3H11_4036 0.26 +0.9
277,861 - Ac3H11_4036 0.26 -0.1
277,929 + Ac3H11_4036 0.30 -1.8
277,929 + Ac3H11_4036 0.30 -1.6
277,929 + Ac3H11_4036 0.30 -0.9
277,929 + Ac3H11_4036 0.30 +0.6
277,929 + Ac3H11_4036 0.30 -2.3
277,930 - +0.1
277,930 - Ac3H11_4036 0.30 -0.5
278,247 + Ac3H11_4036 0.52 +1.0
278,247 + Ac3H11_4036 0.52 -0.7
278,247 + Ac3H11_4036 0.52 +1.3
278,247 + Ac3H11_4036 0.52 -0.7
278,247 + Ac3H11_4036 0.52 +0.5
278,248 - Ac3H11_4036 0.52 -0.1
278,248 - Ac3H11_4036 0.52 -2.5
278,248 - Ac3H11_4036 0.52 +0.7
278,248 - +0.1
278,248 - Ac3H11_4036 0.52 -0.5
278,274 + Ac3H11_4036 0.54 -1.0
278,274 + Ac3H11_4036 0.54 +1.0
278,275 - Ac3H11_4036 0.54 -0.8
278,421 + Ac3H11_4036 0.64 +0.5
278,422 - Ac3H11_4036 0.64 -1.2
278,422 - Ac3H11_4036 0.64 -0.4
278,422 - Ac3H11_4036 0.64 +0.3
278,676 + Ac3H11_4036 0.81 -1.7
278,677 - Ac3H11_4036 0.81 -1.3
278,677 - Ac3H11_4036 0.81 +0.1
278,790 + Ac3H11_4036 0.88 -0.0
278,790 + Ac3H11_4036 0.88 -0.3
278,790 + Ac3H11_4036 0.88 +0.2
278,799 + Ac3H11_4036 0.89 -0.9
278,800 - Ac3H11_4036 0.89 -0.4
278,800 - Ac3H11_4036 0.89 +0.5
278,800 - Ac3H11_4036 0.89 +0.3
278,973 + -0.2
279,134 + Ac3H11_4037 0.27 -1.1
279,134 + Ac3H11_4037 0.27 -0.8
279,134 + Ac3H11_4037 0.27 +0.5
279,134 + Ac3H11_4037 0.27 +0.0
279,134 + Ac3H11_4037 0.27 +0.3
279,134 + Ac3H11_4037 0.27 -0.7
279,134 + Ac3H11_4037 0.27 +0.8
279,135 - Ac3H11_4037 0.27 +0.1
279,135 - Ac3H11_4037 0.27 -0.8
279,135 - Ac3H11_4037 0.27 +0.2
279,185 + Ac3H11_4037 0.42 +0.6
279,185 + Ac3H11_4037 0.42 -0.5
279,185 + Ac3H11_4037 0.42 +0.5
279,185 + Ac3H11_4037 0.42 +0.2
279,186 - Ac3H11_4037 0.42 +1.1
279,287 + Ac3H11_4037 0.71 -0.2
279,287 + Ac3H11_4037 0.71 +0.4
279,287 + Ac3H11_4037 0.71 -0.7
279,287 + Ac3H11_4037 0.71 -0.2
279,287 + Ac3H11_4037 0.71 +0.4
279,287 + Ac3H11_4037 0.71 -0.3
279,287 + Ac3H11_4037 0.71 -2.5
279,287 + Ac3H11_4037 0.71 -0.3
279,287 + Ac3H11_4037 0.71 -0.2
279,287 + Ac3H11_4037 0.71 -1.3
279,288 - Ac3H11_4037 0.72 +1.0
279,288 - Ac3H11_4037 0.72 +0.2
279,288 - Ac3H11_4037 0.72 -0.3
279,288 - Ac3H11_4037 0.72 -0.7
279,288 - Ac3H11_4037 0.72 +0.6
279,288 - Ac3H11_4037 0.72 -0.4
279,288 - Ac3H11_4037 0.72 +0.3
279,390 + -0.3
279,390 + +1.3
279,390 + -0.4
279,390 + -0.1
279,390 + +0.1
279,391 - +0.2
279,391 - +0.2
279,431 + -0.1
279,487 + +0.2
279,487 + -0.9
279,487 + -0.3
279,487 + +0.5
279,487 + +0.0
279,487 + -0.6
279,487 + -1.5
279,487 + -0.0
279,487 + +0.1
279,487 + -0.2
279,487 + +1.7
279,488 - +0.9
279,488 - -1.2
279,488 - +0.4
279,488 - -0.4
279,488 - +0.6
279,488 - +0.4
279,488 - +0.6
279,488 - -0.1
279,488 - +0.9
279,488 - -0.6
279,490 - -0.1
279,490 - -0.3

Or see this region's nucleotide sequence