Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2921

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2920 and Ac3H11_2921 are separated by 254 nucleotidesAc3H11_2921 and Ac3H11_2922 are separated by 72 nucleotidesAc3H11_2922 and Ac3H11_2923 are separated by 307 nucleotides Ac3H11_2920 - FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,236,342 to 1,237,181 _2920 Ac3H11_2921 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 1,237,436 to 1,238,680 _2921 Ac3H11_2922 - Ribonucleotide reductase transcriptional regulator NrdR, at 1,238,753 to 1,239,151 _2922 Ac3H11_2923 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,239,459 to 1,240,349 _2923 Position (kb) 1237 1238 1239Strain fitness (log2 ratio) -2 -1 0 1at 1236.610 kb on + strand, within Ac3H11_2920at 1236.610 kb on + strand, within Ac3H11_2920at 1236.654 kb on + strand, within Ac3H11_2920at 1236.655 kb on - strand, within Ac3H11_2920at 1236.843 kb on + strand, within Ac3H11_2920at 1236.843 kb on + strand, within Ac3H11_2920at 1236.843 kb on + strand, within Ac3H11_2920at 1236.843 kb on + strand, within Ac3H11_2920at 1236.843 kb on + strand, within Ac3H11_2920at 1236.843 kb on + strand, within Ac3H11_2920at 1236.844 kb on - strand, within Ac3H11_2920at 1236.844 kb on - strand, within Ac3H11_2920at 1236.844 kb on - strand, within Ac3H11_2920at 1236.844 kb on - strand, within Ac3H11_2920at 1236.923 kb on + strand, within Ac3H11_2920at 1236.923 kb on + strand, within Ac3H11_2920at 1236.923 kb on + strand, within Ac3H11_2920at 1236.923 kb on + strand, within Ac3H11_2920at 1236.924 kb on - strand, within Ac3H11_2920at 1236.924 kb on - strand, within Ac3H11_2920at 1236.924 kb on - strand, within Ac3H11_2920at 1236.924 kb on - strand, within Ac3H11_2920at 1236.924 kb on - strand, within Ac3H11_2920at 1236.924 kb on - strand, within Ac3H11_2920at 1236.960 kb on + strand, within Ac3H11_2920at 1236.963 kb on + strand, within Ac3H11_2920at 1236.963 kb on + strand, within Ac3H11_2920at 1237.220 kb on + strandat 1237.220 kb on + strandat 1237.220 kb on + strandat 1237.221 kb on - strandat 1237.221 kb on - strandat 1237.221 kb on - strandat 1237.244 kb on - strandat 1237.244 kb on - strandat 1237.244 kb on - strandat 1237.244 kb on - strandat 1237.244 kb on - strandat 1237.244 kb on - strandat 1239.149 kb on + strandat 1239.150 kb on - strandat 1239.150 kb on - strandat 1239.150 kb on - strandat 1239.153 kb on + strandat 1239.153 kb on + strandat 1239.153 kb on + strandat 1239.153 kb on + strandat 1239.153 kb on + strandat 1239.153 kb on + strandat 1239.153 kb on + strandat 1239.154 kb on - strandat 1239.154 kb on - strandat 1239.154 kb on - strandat 1239.154 kb on - strandat 1239.154 kb on - strandat 1239.265 kb on - strandat 1239.330 kb on + strandat 1239.330 kb on + strandat 1239.330 kb on + strandat 1239.331 kb on - strandat 1239.331 kb on - strandat 1239.331 kb on - strandat 1239.331 kb on - strandat 1239.371 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,236,610 + Ac3H11_2920 0.32 -0.4
1,236,610 + Ac3H11_2920 0.32 -0.3
1,236,654 + Ac3H11_2920 0.37 -0.0
1,236,655 - Ac3H11_2920 0.37 +1.5
1,236,843 + Ac3H11_2920 0.60 -0.1
1,236,843 + Ac3H11_2920 0.60 +0.3
1,236,843 + Ac3H11_2920 0.60 +0.1
1,236,843 + Ac3H11_2920 0.60 -0.1
1,236,843 + Ac3H11_2920 0.60 -0.2
1,236,843 + Ac3H11_2920 0.60 -2.3
1,236,844 - Ac3H11_2920 0.60 +0.5
1,236,844 - Ac3H11_2920 0.60 +0.8
1,236,844 - Ac3H11_2920 0.60 -1.0
1,236,844 - Ac3H11_2920 0.60 +1.7
1,236,923 + Ac3H11_2920 0.69 -0.1
1,236,923 + Ac3H11_2920 0.69 -0.8
1,236,923 + Ac3H11_2920 0.69 -0.2
1,236,923 + Ac3H11_2920 0.69 +0.5
1,236,924 - Ac3H11_2920 0.69 -0.6
1,236,924 - Ac3H11_2920 0.69 +0.2
1,236,924 - Ac3H11_2920 0.69 -0.1
1,236,924 - Ac3H11_2920 0.69 +0.6
1,236,924 - Ac3H11_2920 0.69 +0.3
1,236,924 - Ac3H11_2920 0.69 +0.4
1,236,960 + Ac3H11_2920 0.74 -0.4
1,236,963 + Ac3H11_2920 0.74 -1.0
1,236,963 + Ac3H11_2920 0.74 +0.7
1,237,220 + -0.2
1,237,220 + +1.0
1,237,220 + +0.4
1,237,221 - +1.0
1,237,221 - +1.3
1,237,221 - +1.0
1,237,244 - +0.9
1,237,244 - -0.3
1,237,244 - -0.8
1,237,244 - +0.7
1,237,244 - -0.7
1,237,244 - -0.2
1,239,149 + -0.6
1,239,150 - -0.0
1,239,150 - -0.2
1,239,150 - +0.8
1,239,153 + +0.0
1,239,153 + +0.8
1,239,153 + -0.1
1,239,153 + -0.8
1,239,153 + -0.1
1,239,153 + +0.5
1,239,153 + +0.3
1,239,154 - -1.6
1,239,154 - +1.2
1,239,154 - +0.4
1,239,154 - -0.8
1,239,154 - -0.4
1,239,265 - +0.5
1,239,330 + -0.0
1,239,330 + +1.2
1,239,330 + +0.7
1,239,331 - -1.2
1,239,331 - +0.7
1,239,331 - -0.4
1,239,331 - +0.1
1,239,371 - -0.5

Or see this region's nucleotide sequence