Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2295

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2294 and Ac3H11_2295 are separated by 253 nucleotidesAc3H11_2295 and Ac3H11_2296 are separated by 45 nucleotidesAc3H11_2296 and Ac3H11_2297 are separated by 68 nucleotides Ac3H11_2294 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 533,923 to 535,326 _2294 Ac3H11_2295 - N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17), at 535,580 to 536,785 _2295 Ac3H11_2296 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 536,831 to 537,664 _2296 Ac3H11_2297 - Twitching motility protein PilT, at 537,733 to 538,896 _2297 Position (kb) 535 536 537Strain fitness (log2 ratio) -2 -1 0 1 2at 534.679 kb on + strand, within Ac3H11_2294at 535.142 kb on + strand, within Ac3H11_2294at 535.142 kb on + strand, within Ac3H11_2294at 535.143 kb on - strand, within Ac3H11_2294at 535.143 kb on - strand, within Ac3H11_2294at 535.143 kb on - strand, within Ac3H11_2294at 535.159 kb on - strand, within Ac3H11_2294at 535.229 kb on + strandat 535.229 kb on + strandat 535.230 kb on - strandat 535.230 kb on - strandat 535.230 kb on - strandat 535.230 kb on - strandat 535.230 kb on - strandat 535.230 kb on - strandat 535.247 kb on + strandat 535.247 kb on + strandat 535.247 kb on + strandat 535.247 kb on + strandat 535.248 kb on - strandat 535.248 kb on - strandat 535.248 kb on - strandat 535.248 kb on - strandat 535.248 kb on - strandat 535.248 kb on - strandat 535.393 kb on + strandat 535.393 kb on + strandat 535.394 kb on - strandat 535.394 kb on - strandat 535.420 kb on + strandat 535.420 kb on + strandat 535.421 kb on - strandat 535.421 kb on - strandat 535.421 kb on - strandat 535.421 kb on - strandat 535.421 kb on - strandat 535.421 kb on - strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.445 kb on + strandat 535.446 kb on - strandat 535.446 kb on - strandat 535.446 kb on - strandat 535.446 kb on - strandat 535.446 kb on - strandat 535.446 kb on - strandat 535.446 kb on - strandat 535.446 kb on - strandat 535.446 kb on - strandat 535.446 kb on - strandat 535.446 kb on - strandat 535.459 kb on + strandat 535.459 kb on + strandat 535.459 kb on + strandat 535.460 kb on - strandat 535.460 kb on - strandat 535.460 kb on - strandat 535.460 kb on - strandat 535.460 kb on - strandat 535.569 kb on - strandat 535.569 kb on - strandat 535.705 kb on + strand, within Ac3H11_2295at 535.705 kb on + strand, within Ac3H11_2295at 535.705 kb on + strand, within Ac3H11_2295at 535.705 kb on + strand, within Ac3H11_2295at 535.705 kb on + strand, within Ac3H11_2295at 535.705 kb on + strand, within Ac3H11_2295at 535.706 kb on - strand, within Ac3H11_2295at 535.706 kb on - strand, within Ac3H11_2295at 535.706 kb on - strand, within Ac3H11_2295at 535.706 kb on - strand, within Ac3H11_2295at 535.706 kb on - strand, within Ac3H11_2295at 535.706 kb on - strand, within Ac3H11_2295at 535.706 kb on - strand, within Ac3H11_2295at 535.732 kb on + strand, within Ac3H11_2295at 535.732 kb on + strand, within Ac3H11_2295at 535.733 kb on - strand, within Ac3H11_2295at 535.735 kb on + strand, within Ac3H11_2295at 535.735 kb on + strand, within Ac3H11_2295at 535.736 kb on - strand, within Ac3H11_2295at 535.760 kb on + strand, within Ac3H11_2295at 535.761 kb on - strand, within Ac3H11_2295at 535.761 kb on - strand, within Ac3H11_2295at 535.761 kb on - strand, within Ac3H11_2295at 535.823 kb on + strand, within Ac3H11_2295at 535.824 kb on - strand, within Ac3H11_2295at 535.824 kb on - strand, within Ac3H11_2295at 535.824 kb on - strand, within Ac3H11_2295at 535.955 kb on + strand, within Ac3H11_2295at 535.955 kb on + strand, within Ac3H11_2295at 535.956 kb on - strand, within Ac3H11_2295at 535.956 kb on - strand, within Ac3H11_2295at 535.956 kb on - strand, within Ac3H11_2295at 535.964 kb on + strand, within Ac3H11_2295at 535.964 kb on + strand, within Ac3H11_2295at 535.964 kb on + strand, within Ac3H11_2295at 535.964 kb on + strand, within Ac3H11_2295at 535.965 kb on - strand, within Ac3H11_2295at 535.965 kb on - strand, within Ac3H11_2295at 535.965 kb on - strand, within Ac3H11_2295at 535.965 kb on - strand, within Ac3H11_2295at 535.965 kb on - strand, within Ac3H11_2295at 535.965 kb on - strand, within Ac3H11_2295at 535.965 kb on - strand, within Ac3H11_2295at 536.000 kb on + strand, within Ac3H11_2295at 536.000 kb on + strand, within Ac3H11_2295at 536.000 kb on + strand, within Ac3H11_2295at 536.000 kb on + strand, within Ac3H11_2295at 536.000 kb on + strand, within Ac3H11_2295at 536.000 kb on + strand, within Ac3H11_2295at 536.001 kb on - strand, within Ac3H11_2295at 536.001 kb on - strand, within Ac3H11_2295at 536.001 kb on - strand, within Ac3H11_2295at 536.001 kb on - strand, within Ac3H11_2295at 536.001 kb on - strand, within Ac3H11_2295at 536.001 kb on - strand, within Ac3H11_2295at 536.003 kb on + strand, within Ac3H11_2295at 536.003 kb on + strand, within Ac3H11_2295at 536.003 kb on + strand, within Ac3H11_2295at 536.003 kb on + strand, within Ac3H11_2295at 536.003 kb on + strand, within Ac3H11_2295at 536.003 kb on + strand, within Ac3H11_2295at 536.003 kb on + strand, within Ac3H11_2295at 536.004 kb on - strand, within Ac3H11_2295at 536.004 kb on - strand, within Ac3H11_2295at 536.004 kb on - strand, within Ac3H11_2295at 536.168 kb on + strand, within Ac3H11_2295at 536.198 kb on + strand, within Ac3H11_2295at 536.198 kb on + strand, within Ac3H11_2295at 536.198 kb on + strand, within Ac3H11_2295at 536.198 kb on + strand, within Ac3H11_2295at 536.198 kb on + strand, within Ac3H11_2295at 536.198 kb on + strand, within Ac3H11_2295at 536.199 kb on - strand, within Ac3H11_2295at 536.199 kb on - strand, within Ac3H11_2295at 536.199 kb on - strand, within Ac3H11_2295at 536.199 kb on - strand, within Ac3H11_2295at 536.199 kb on - strand, within Ac3H11_2295at 536.199 kb on - strand, within Ac3H11_2295at 536.199 kb on - strand, within Ac3H11_2295at 536.199 kb on - strand, within Ac3H11_2295at 536.210 kb on + strand, within Ac3H11_2295at 536.210 kb on + strand, within Ac3H11_2295at 536.211 kb on - strand, within Ac3H11_2295at 536.211 kb on - strand, within Ac3H11_2295at 536.211 kb on - strand, within Ac3H11_2295at 536.211 kb on - strand, within Ac3H11_2295at 536.390 kb on + strand, within Ac3H11_2295at 536.391 kb on - strand, within Ac3H11_2295at 536.391 kb on - strand, within Ac3H11_2295at 536.391 kb on - strand, within Ac3H11_2295at 536.555 kb on + strand, within Ac3H11_2295at 536.555 kb on + strand, within Ac3H11_2295at 536.556 kb on - strand, within Ac3H11_2295at 536.556 kb on - strand, within Ac3H11_2295at 536.556 kb on - strand, within Ac3H11_2295at 536.556 kb on - strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on + strand, within Ac3H11_2295at 536.627 kb on - strand, within Ac3H11_2295at 536.628 kb on - strand, within Ac3H11_2295at 536.628 kb on - strand, within Ac3H11_2295at 536.628 kb on - strand, within Ac3H11_2295at 536.628 kb on - strand, within Ac3H11_2295at 536.628 kb on - strand, within Ac3H11_2295at 536.628 kb on - strand, within Ac3H11_2295at 536.654 kb on + strand, within Ac3H11_2295at 536.654 kb on + strand, within Ac3H11_2295

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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534,679 + Ac3H11_2294 0.54 -0.4
535,142 + Ac3H11_2294 0.87 +1.5
535,142 + Ac3H11_2294 0.87 -0.5
535,143 - Ac3H11_2294 0.87 +1.3
535,143 - Ac3H11_2294 0.87 +0.3
535,143 - Ac3H11_2294 0.87 -1.2
535,159 - Ac3H11_2294 0.88 -0.1
535,229 + +0.9
535,229 + -0.1
535,230 - +0.4
535,230 - -2.6
535,230 - -0.8
535,230 - +0.3
535,230 - -1.0
535,230 - +0.6
535,247 + +0.4
535,247 + +0.1
535,247 + +0.9
535,247 + +1.1
535,248 - -0.3
535,248 - -0.6
535,248 - -0.2
535,248 - +0.5
535,248 - -0.6
535,248 - +1.8
535,393 + -0.6
535,393 + -0.3
535,394 - -0.1
535,394 - +0.6
535,420 + +0.1
535,420 + +1.6
535,421 - -0.8
535,421 - -1.4
535,421 - -0.4
535,421 - +0.1
535,421 - -0.1
535,421 - +0.1
535,445 + -2.2
535,445 + +1.3
535,445 + +0.5
535,445 + -0.2
535,445 + -0.2
535,445 + -0.2
535,445 + +0.0
535,445 + -0.4
535,445 + +0.7
535,445 + +0.7
535,445 + +1.0
535,445 + -0.6
535,445 + -1.2
535,445 + -0.2
535,445 + -1.2
535,445 + -0.5
535,445 + -0.2
535,445 + +0.6
535,446 - -0.8
535,446 - +0.6
535,446 - -0.3
535,446 - -1.3
535,446 - -1.7
535,446 - +1.1
535,446 - +0.1
535,446 - -0.1
535,446 - -0.2
535,446 - -0.5
535,446 - +0.8
535,459 + -0.2
535,459 + +0.1
535,459 + -1.7
535,460 - +0.4
535,460 - +0.2
535,460 - +0.9
535,460 - +1.1
535,460 - -0.8
535,569 - +1.8
535,569 - -0.0
535,705 + Ac3H11_2295 0.10 -1.5
535,705 + Ac3H11_2295 0.10 +0.5
535,705 + Ac3H11_2295 0.10 +0.7
535,705 + Ac3H11_2295 0.10 -0.9
535,705 + Ac3H11_2295 0.10 -0.5
535,705 + Ac3H11_2295 0.10 -0.5
535,706 - Ac3H11_2295 0.10 +0.5
535,706 - Ac3H11_2295 0.10 +0.0
535,706 - Ac3H11_2295 0.10 -2.3
535,706 - Ac3H11_2295 0.10 +0.5
535,706 - Ac3H11_2295 0.10 +0.1
535,706 - Ac3H11_2295 0.10 +0.2
535,706 - Ac3H11_2295 0.10 +0.4
535,732 + Ac3H11_2295 0.13 +0.0
535,732 + Ac3H11_2295 0.13 +0.1
535,733 - Ac3H11_2295 0.13 +1.3
535,735 + Ac3H11_2295 0.13 -1.1
535,735 + Ac3H11_2295 0.13 +0.0
535,736 - Ac3H11_2295 0.13 -1.1
535,760 + Ac3H11_2295 0.15 +1.1
535,761 - Ac3H11_2295 0.15 -0.7
535,761 - Ac3H11_2295 0.15 +0.1
535,761 - Ac3H11_2295 0.15 -0.1
535,823 + Ac3H11_2295 0.20 +0.3
535,824 - Ac3H11_2295 0.20 -0.4
535,824 - Ac3H11_2295 0.20 +0.1
535,824 - Ac3H11_2295 0.20 +1.7
535,955 + Ac3H11_2295 0.31 +1.1
535,955 + Ac3H11_2295 0.31 -0.5
535,956 - Ac3H11_2295 0.31 +0.4
535,956 - Ac3H11_2295 0.31 +0.2
535,956 - Ac3H11_2295 0.31 -1.0
535,964 + Ac3H11_2295 0.32 +0.3
535,964 + Ac3H11_2295 0.32 -0.5
535,964 + Ac3H11_2295 0.32 -0.8
535,964 + Ac3H11_2295 0.32 -2.0
535,965 - Ac3H11_2295 0.32 +0.4
535,965 - Ac3H11_2295 0.32 -1.2
535,965 - Ac3H11_2295 0.32 -0.3
535,965 - Ac3H11_2295 0.32 -0.7
535,965 - Ac3H11_2295 0.32 +0.1
535,965 - Ac3H11_2295 0.32 -1.4
535,965 - Ac3H11_2295 0.32 +1.0
536,000 + Ac3H11_2295 0.35 +0.2
536,000 + Ac3H11_2295 0.35 +0.6
536,000 + Ac3H11_2295 0.35 +0.7
536,000 + Ac3H11_2295 0.35 -0.2
536,000 + Ac3H11_2295 0.35 +0.7
536,000 + Ac3H11_2295 0.35 +0.3
536,001 - Ac3H11_2295 0.35 +1.2
536,001 - Ac3H11_2295 0.35 +0.3
536,001 - Ac3H11_2295 0.35 -1.6
536,001 - Ac3H11_2295 0.35 +0.2
536,001 - Ac3H11_2295 0.35 +0.0
536,001 - Ac3H11_2295 0.35 +0.2
536,003 + Ac3H11_2295 0.35 -1.6
536,003 + Ac3H11_2295 0.35 -0.1
536,003 + Ac3H11_2295 0.35 -0.5
536,003 + Ac3H11_2295 0.35 +0.5
536,003 + Ac3H11_2295 0.35 -0.7
536,003 + Ac3H11_2295 0.35 +0.2
536,003 + Ac3H11_2295 0.35 +0.3
536,004 - Ac3H11_2295 0.35 +0.1
536,004 - Ac3H11_2295 0.35 -0.8
536,004 - Ac3H11_2295 0.35 +0.2
536,168 + Ac3H11_2295 0.49 +0.6
536,198 + Ac3H11_2295 0.51 -0.7
536,198 + Ac3H11_2295 0.51 +0.4
536,198 + Ac3H11_2295 0.51 -1.1
536,198 + Ac3H11_2295 0.51 +0.0
536,198 + Ac3H11_2295 0.51 +0.4
536,198 + Ac3H11_2295 0.51 -0.3
536,199 - Ac3H11_2295 0.51 +0.7
536,199 - Ac3H11_2295 0.51 +0.3
536,199 - Ac3H11_2295 0.51 +0.3
536,199 - Ac3H11_2295 0.51 +1.3
536,199 - Ac3H11_2295 0.51 -0.3
536,199 - Ac3H11_2295 0.51 +0.3
536,199 - Ac3H11_2295 0.51 -0.3
536,199 - Ac3H11_2295 0.51 +0.5
536,210 + Ac3H11_2295 0.52 +0.1
536,210 + Ac3H11_2295 0.52 -2.2
536,211 - Ac3H11_2295 0.52 +1.0
536,211 - Ac3H11_2295 0.52 -0.3
536,211 - Ac3H11_2295 0.52 -0.2
536,211 - Ac3H11_2295 0.52 +0.1
536,390 + Ac3H11_2295 0.67 -1.3
536,391 - Ac3H11_2295 0.67 +1.0
536,391 - Ac3H11_2295 0.67 +0.0
536,391 - Ac3H11_2295 0.67 +0.2
536,555 + Ac3H11_2295 0.81 -0.5
536,555 + Ac3H11_2295 0.81 -1.8
536,556 - Ac3H11_2295 0.81 -0.7
536,556 - Ac3H11_2295 0.81 +0.1
536,556 - Ac3H11_2295 0.81 +1.4
536,556 - Ac3H11_2295 0.81 -0.2
536,627 + Ac3H11_2295 0.87 -0.3
536,627 + Ac3H11_2295 0.87 -1.2
536,627 + Ac3H11_2295 0.87 +0.8
536,627 + Ac3H11_2295 0.87 +1.3
536,627 + Ac3H11_2295 0.87 +0.8
536,627 + Ac3H11_2295 0.87 +0.4
536,627 + Ac3H11_2295 0.87 +0.4
536,627 + Ac3H11_2295 0.87 -1.3
536,627 + Ac3H11_2295 0.87 +0.4
536,627 + Ac3H11_2295 0.87 -2.3
536,627 + Ac3H11_2295 0.87 +0.2
536,627 + Ac3H11_2295 0.87 -1.1
536,627 + Ac3H11_2295 0.87 +0.6
536,627 + Ac3H11_2295 0.87 +0.4
536,627 + Ac3H11_2295 0.87 +0.7
536,627 - Ac3H11_2295 0.87 -0.3
536,628 - Ac3H11_2295 0.87 +0.2
536,628 - Ac3H11_2295 0.87 -1.5
536,628 - Ac3H11_2295 0.87 -1.2
536,628 - Ac3H11_2295 0.87 +0.0
536,628 - Ac3H11_2295 0.87 +0.5
536,628 - Ac3H11_2295 0.87 +0.5
536,654 + Ac3H11_2295 0.89 -0.9
536,654 + Ac3H11_2295 0.89 -1.1

Or see this region's nucleotide sequence