Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20070

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20060 and AO353_20065 are separated by 104 nucleotidesAO353_20065 and AO353_20070 are separated by 248 nucleotidesAO353_20070 and AO353_20075 are separated by 79 nucleotides AO353_20060: AO353_20060 - hypothetical protein, at 4,413,628 to 4,413,882 _20060 AO353_20065: AO353_20065 - hypothetical protein, at 4,413,987 to 4,414,379 _20065 AO353_20070: AO353_20070 - hypothetical protein, at 4,414,628 to 4,415,329 _20070 AO353_20075: AO353_20075 - thiamine biosynthesis protein ApbE, at 4,415,409 to 4,416,374 _20075 Position (kb) 4414 4415 4416Strain fitness (log2 ratio) -2 -1 0 1 2at 4413.741 kb on - strand, within AO353_20060at 4413.785 kb on + strand, within AO353_20060at 4413.785 kb on + strand, within AO353_20060at 4413.785 kb on + strand, within AO353_20060at 4413.786 kb on - strand, within AO353_20060at 4413.786 kb on - strand, within AO353_20060at 4413.786 kb on - strand, within AO353_20060at 4413.786 kb on - strand, within AO353_20060at 4413.786 kb on - strand, within AO353_20060at 4413.786 kb on - strand, within AO353_20060at 4413.786 kb on - strand, within AO353_20060at 4413.814 kb on + strand, within AO353_20060at 4413.916 kb on + strandat 4413.916 kb on + strandat 4413.917 kb on - strandat 4414.034 kb on + strand, within AO353_20065at 4414.034 kb on + strand, within AO353_20065at 4414.034 kb on + strand, within AO353_20065at 4414.034 kb on + strandat 4414.035 kb on - strand, within AO353_20065at 4414.035 kb on - strand, within AO353_20065at 4414.035 kb on - strand, within AO353_20065at 4414.035 kb on - strand, within AO353_20065at 4414.035 kb on - strand, within AO353_20065at 4414.082 kb on + strand, within AO353_20065at 4414.083 kb on - strand, within AO353_20065at 4414.083 kb on - strand, within AO353_20065at 4414.094 kb on + strand, within AO353_20065at 4414.094 kb on + strandat 4414.094 kb on + strand, within AO353_20065at 4414.095 kb on - strand, within AO353_20065at 4414.095 kb on - strand, within AO353_20065at 4414.095 kb on - strand, within AO353_20065at 4414.410 kb on + strandat 4414.410 kb on + strandat 4414.410 kb on + strandat 4414.410 kb on + strandat 4414.411 kb on - strandat 4414.411 kb on - strandat 4414.411 kb on - strandat 4414.413 kb on + strandat 4414.492 kb on + strandat 4414.493 kb on - strandat 4414.493 kb on - strandat 4414.493 kb on - strandat 4414.537 kb on + strandat 4414.537 kb on + strandat 4414.572 kb on + strandat 4414.572 kb on + strandat 4414.572 kb on + strandat 4414.572 kb on + strandat 4414.573 kb on - strandat 4414.573 kb on - strandat 4414.573 kb on - strandat 4414.573 kb on - strandat 4414.573 kb on - strandat 4414.573 kb on - strandat 4414.620 kb on + strandat 4414.621 kb on - strandat 4414.621 kb on - strandat 4414.652 kb on - strandat 4414.666 kb on + strandat 4414.666 kb on + strandat 4414.666 kb on + strandat 4414.667 kb on - strandat 4414.667 kb on - strandat 4414.667 kb on - strandat 4414.667 kb on - strandat 4414.669 kb on + strandat 4414.669 kb on + strandat 4414.670 kb on - strandat 4414.769 kb on + strand, within AO353_20070at 4414.770 kb on - strand, within AO353_20070at 4414.853 kb on + strand, within AO353_20070at 4414.853 kb on + strand, within AO353_20070at 4414.853 kb on + strand, within AO353_20070at 4414.854 kb on - strand, within AO353_20070at 4414.979 kb on - strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.013 kb on + strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.014 kb on - strand, within AO353_20070at 4415.121 kb on + strand, within AO353_20070at 4415.121 kb on + strand, within AO353_20070at 4415.121 kb on + strand, within AO353_20070at 4415.122 kb on - strand, within AO353_20070at 4415.122 kb on - strand, within AO353_20070at 4415.237 kb on + strand, within AO353_20070at 4415.237 kb on + strand, within AO353_20070at 4415.237 kb on + strand, within AO353_20070at 4415.237 kb on + strand, within AO353_20070at 4415.238 kb on - strand, within AO353_20070at 4415.296 kb on + strandat 4415.296 kb on + strandat 4415.361 kb on + strandat 4415.384 kb on + strandat 4415.385 kb on - strandat 4415.454 kb on + strandat 4415.481 kb on + strandat 4415.481 kb on + strandat 4415.481 kb on + strandat 4415.481 kb on + strandat 4415.481 kb on + strandat 4415.481 kb on + strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.482 kb on - strandat 4415.651 kb on + strand, within AO353_20075at 4415.651 kb on + strand, within AO353_20075at 4415.651 kb on + strand, within AO353_20075at 4415.652 kb on - strand, within AO353_20075at 4415.652 kb on - strand, within AO353_20075at 4415.652 kb on - strand, within AO353_20075at 4415.838 kb on + strand, within AO353_20075at 4415.845 kb on + strand, within AO353_20075at 4415.845 kb on + strand, within AO353_20075at 4415.845 kb on + strand, within AO353_20075at 4415.845 kb on + strand, within AO353_20075at 4415.845 kb on + strand, within AO353_20075at 4415.846 kb on - strand, within AO353_20075at 4415.846 kb on - strand, within AO353_20075at 4415.846 kb on - strand, within AO353_20075at 4415.846 kb on - strand, within AO353_20075at 4415.846 kb on - strand, within AO353_20075at 4415.916 kb on + strand, within AO353_20075at 4415.916 kb on + strand, within AO353_20075at 4415.917 kb on - strand, within AO353_20075at 4415.917 kb on - strand, within AO353_20075at 4415.917 kb on - strand, within AO353_20075at 4415.917 kb on - strand, within AO353_20075at 4415.917 kb on - strand, within AO353_20075at 4415.917 kb on - strand, within AO353_20075at 4415.917 kb on - strand, within AO353_20075at 4415.928 kb on - strand, within AO353_20075at 4416.020 kb on + strand, within AO353_20075at 4416.021 kb on - strand, within AO353_20075at 4416.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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4,413,741 - AO353_20060 0.44 +0.3
4,413,785 + AO353_20060 0.62 -1.0
4,413,785 + AO353_20060 0.62 -0.6
4,413,785 + AO353_20060 0.62 -1.2
4,413,786 - AO353_20060 0.62 +0.4
4,413,786 - AO353_20060 0.62 -0.3
4,413,786 - AO353_20060 0.62 -0.1
4,413,786 - AO353_20060 0.62 -0.4
4,413,786 - AO353_20060 0.62 -0.9
4,413,786 - AO353_20060 0.62 -0.6
4,413,786 - AO353_20060 0.62 -2.3
4,413,814 + AO353_20060 0.73 -0.0
4,413,916 + +0.0
4,413,916 + -0.4
4,413,917 - +0.4
4,414,034 + AO353_20065 0.12 +0.0
4,414,034 + AO353_20065 0.12 -1.4
4,414,034 + AO353_20065 0.12 -0.3
4,414,034 + +2.0
4,414,035 - AO353_20065 0.12 +1.0
4,414,035 - AO353_20065 0.12 +0.2
4,414,035 - AO353_20065 0.12 -0.0
4,414,035 - AO353_20065 0.12 -0.7
4,414,035 - AO353_20065 0.12 +1.0
4,414,082 + AO353_20065 0.24 -0.3
4,414,083 - AO353_20065 0.24 -0.5
4,414,083 - AO353_20065 0.24 -0.4
4,414,094 + AO353_20065 0.27 +0.5
4,414,094 + +1.4
4,414,094 + AO353_20065 0.27 +0.4
4,414,095 - AO353_20065 0.27 -1.2
4,414,095 - AO353_20065 0.27 +1.4
4,414,095 - AO353_20065 0.27 +0.4
4,414,410 + -0.1
4,414,410 + -0.7
4,414,410 + -1.2
4,414,410 + -0.9
4,414,411 - -0.6
4,414,411 - -1.3
4,414,411 - -1.0
4,414,413 + +0.9
4,414,492 + +1.0
4,414,493 - -1.8
4,414,493 - +1.4
4,414,493 - -0.3
4,414,537 + +0.3
4,414,537 + -0.7
4,414,572 + -0.2
4,414,572 + -0.6
4,414,572 + -0.2
4,414,572 + -0.2
4,414,573 - +2.0
4,414,573 - -0.2
4,414,573 - +0.4
4,414,573 - -1.6
4,414,573 - -0.5
4,414,573 - -0.7
4,414,620 + -1.4
4,414,621 - +0.6
4,414,621 - +2.6
4,414,652 - -0.3
4,414,666 + -1.0
4,414,666 + -1.0
4,414,666 + -1.4
4,414,667 - +0.3
4,414,667 - -0.3
4,414,667 - -0.9
4,414,667 - -1.3
4,414,669 + +0.3
4,414,669 + +1.0
4,414,670 - -1.7
4,414,769 + AO353_20070 0.20 -1.7
4,414,770 - AO353_20070 0.20 +1.7
4,414,853 + AO353_20070 0.32 -1.2
4,414,853 + AO353_20070 0.32 +0.3
4,414,853 + AO353_20070 0.32 -0.8
4,414,854 - AO353_20070 0.32 +1.3
4,414,979 - AO353_20070 0.50 -0.3
4,415,013 + AO353_20070 0.55 -1.1
4,415,013 + AO353_20070 0.55 +0.1
4,415,013 + AO353_20070 0.55 -1.0
4,415,013 + AO353_20070 0.55 +0.9
4,415,013 + AO353_20070 0.55 -1.6
4,415,013 + AO353_20070 0.55 +0.4
4,415,013 + AO353_20070 0.55 -0.6
4,415,013 + AO353_20070 0.55 -0.7
4,415,013 + AO353_20070 0.55 -0.2
4,415,013 + AO353_20070 0.55 +0.7
4,415,013 + AO353_20070 0.55 -0.7
4,415,013 + AO353_20070 0.55 +1.0
4,415,013 + AO353_20070 0.55 +1.0
4,415,014 - AO353_20070 0.55 +0.2
4,415,014 - AO353_20070 0.55 +0.1
4,415,014 - AO353_20070 0.55 -1.7
4,415,014 - AO353_20070 0.55 +0.4
4,415,014 - AO353_20070 0.55 +0.4
4,415,014 - AO353_20070 0.55 +0.1
4,415,014 - AO353_20070 0.55 +1.6
4,415,014 - AO353_20070 0.55 +0.6
4,415,014 - AO353_20070 0.55 +0.4
4,415,014 - AO353_20070 0.55 -0.1
4,415,014 - AO353_20070 0.55 +1.0
4,415,014 - AO353_20070 0.55 +2.0
4,415,014 - AO353_20070 0.55 -0.2
4,415,014 - AO353_20070 0.55 +1.2
4,415,014 - AO353_20070 0.55 +0.5
4,415,121 + AO353_20070 0.70 +0.8
4,415,121 + AO353_20070 0.70 -2.0
4,415,121 + AO353_20070 0.70 +0.7
4,415,122 - AO353_20070 0.70 -0.8
4,415,122 - AO353_20070 0.70 -0.6
4,415,237 + AO353_20070 0.87 +0.7
4,415,237 + AO353_20070 0.87 +0.5
4,415,237 + AO353_20070 0.87 +0.6
4,415,237 + AO353_20070 0.87 +1.0
4,415,238 - AO353_20070 0.87 +0.0
4,415,296 + -1.4
4,415,296 + +1.7
4,415,361 + +0.9
4,415,384 + +0.6
4,415,385 - -1.4
4,415,454 + +0.9
4,415,481 + +2.0
4,415,481 + -0.3
4,415,481 + +0.5
4,415,481 + +1.2
4,415,481 + +0.6
4,415,481 + +0.1
4,415,482 - +0.6
4,415,482 - -1.2
4,415,482 - +1.3
4,415,482 - +0.4
4,415,482 - -2.2
4,415,482 - -2.7
4,415,482 - +1.9
4,415,482 - +0.6
4,415,482 - -0.1
4,415,482 - +0.3
4,415,482 - +0.4
4,415,482 - -0.1
4,415,651 + AO353_20075 0.25 -0.3
4,415,651 + AO353_20075 0.25 +0.4
4,415,651 + AO353_20075 0.25 -0.8
4,415,652 - AO353_20075 0.25 -0.1
4,415,652 - AO353_20075 0.25 -0.2
4,415,652 - AO353_20075 0.25 +0.4
4,415,838 + AO353_20075 0.44 +0.3
4,415,845 + AO353_20075 0.45 +0.2
4,415,845 + AO353_20075 0.45 +0.0
4,415,845 + AO353_20075 0.45 -1.2
4,415,845 + AO353_20075 0.45 +0.3
4,415,845 + AO353_20075 0.45 +0.6
4,415,846 - AO353_20075 0.45 +0.6
4,415,846 - AO353_20075 0.45 +0.2
4,415,846 - AO353_20075 0.45 +0.4
4,415,846 - AO353_20075 0.45 -0.3
4,415,846 - AO353_20075 0.45 -1.0
4,415,916 + AO353_20075 0.52 -0.2
4,415,916 + AO353_20075 0.52 +0.4
4,415,917 - AO353_20075 0.53 -0.3
4,415,917 - AO353_20075 0.53 +0.0
4,415,917 - AO353_20075 0.53 -1.2
4,415,917 - AO353_20075 0.53 -0.4
4,415,917 - AO353_20075 0.53 +0.6
4,415,917 - AO353_20075 0.53 +1.0
4,415,917 - AO353_20075 0.53 -0.8
4,415,928 - AO353_20075 0.54 -0.4
4,416,020 + AO353_20075 0.63 +1.2
4,416,021 - AO353_20075 0.63 +0.7
4,416,319 + -0.9

Or see this region's nucleotide sequence