Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06310

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 10 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06300 and MMP_RS06305 are separated by 115 nucleotidesMMP_RS06305 and MMP_RS06310 are separated by 19 nucleotidesMMP_RS06310 and MMP_RS06315 are separated by 112 nucleotidesMMP_RS06315 and MMP_RS06320 are separated by 22 nucleotides MMP_RS06300: MMP_RS06300 - ABC transporter substrate-binding protein, at 1,213,682 to 1,214,446 _RS06300 MMP_RS06305: MMP_RS06305 - transporter substrate-binding domain-containing protein, at 1,214,562 to 1,215,326 _RS06305 MMP_RS06310: MMP_RS06310 - NAD(P)/FAD-dependent oxidoreductase, at 1,215,346 to 1,216,503 _RS06310 MMP_RS06315: MMP_RS06315 - cobalt-precorrin-7 (C(5))-methyltransferase, at 1,216,616 to 1,217,242 _RS06315 MMP_RS06320: MMP_RS06320 - hypothetical protein, at 1,217,265 to 1,217,903 _RS06320 Position (kb) 1215 1216 1217Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1214.539 kb on + strandat 1214.539 kb on + strandat 1214.546 kb on + strandat 1214.678 kb on + strand, within MMP_RS06305at 1214.703 kb on - strand, within MMP_RS06305at 1214.704 kb on + strand, within MMP_RS06305at 1214.847 kb on + strand, within MMP_RS06305at 1215.060 kb on - strand, within MMP_RS06305at 1215.159 kb on + strand, within MMP_RS06305at 1215.175 kb on + strand, within MMP_RS06305at 1215.218 kb on - strand, within MMP_RS06305at 1215.258 kb on + strandat 1215.259 kb on - strandat 1215.484 kb on - strand, within MMP_RS06310at 1215.648 kb on + strand, within MMP_RS06310at 1215.664 kb on - strand, within MMP_RS06310at 1215.895 kb on + strand, within MMP_RS06310at 1215.928 kb on - strand, within MMP_RS06310at 1216.012 kb on + strand, within MMP_RS06310at 1216.100 kb on + strand, within MMP_RS06310at 1216.128 kb on - strand, within MMP_RS06310at 1216.129 kb on + strand, within MMP_RS06310at 1216.192 kb on + strand, within MMP_RS06310at 1216.506 kb on - strandat 1216.550 kb on - strandat 1216.550 kb on - strandat 1216.553 kb on + strandat 1216.555 kb on - strandat 1216.572 kb on - strandat 1216.573 kb on + strandat 1216.573 kb on + strandat 1216.998 kb on - strand, within MMP_RS06315at 1216.999 kb on + strand, within MMP_RS06315at 1217.233 kb on - strandat 1217.236 kb on + strandat 1217.386 kb on - strand, within MMP_RS06320at 1217.391 kb on + strand, within MMP_RS06320at 1217.396 kb on - strand, within MMP_RS06320at 1217.396 kb on - strand, within MMP_RS06320at 1217.397 kb on + strand, within MMP_RS06320at 1217.401 kb on - strand, within MMP_RS06320at 1217.472 kb on - strand, within MMP_RS06320

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 10 generations
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1,214,539 + +0.1
1,214,539 + -0.3
1,214,546 + +0.1
1,214,678 + MMP_RS06305 0.15 +0.6
1,214,703 - MMP_RS06305 0.18 -0.3
1,214,704 + MMP_RS06305 0.19 +0.2
1,214,847 + MMP_RS06305 0.37 +0.0
1,215,060 - MMP_RS06305 0.65 +0.4
1,215,159 + MMP_RS06305 0.78 +0.3
1,215,175 + MMP_RS06305 0.80 +0.1
1,215,218 - MMP_RS06305 0.86 +0.2
1,215,258 + -0.4
1,215,259 - -0.0
1,215,484 - MMP_RS06310 0.12 -2.4
1,215,648 + MMP_RS06310 0.26 -0.7
1,215,664 - MMP_RS06310 0.27 -1.8
1,215,895 + MMP_RS06310 0.47 -2.5
1,215,928 - MMP_RS06310 0.50 -2.2
1,216,012 + MMP_RS06310 0.58 -1.3
1,216,100 + MMP_RS06310 0.65 -3.6
1,216,128 - MMP_RS06310 0.68 -2.4
1,216,129 + MMP_RS06310 0.68 -0.6
1,216,192 + MMP_RS06310 0.73 +0.6
1,216,506 - -2.7
1,216,550 - -1.6
1,216,550 - -1.7
1,216,553 + -3.7
1,216,555 - -3.2
1,216,572 - -1.6
1,216,573 + -4.0
1,216,573 + -1.7
1,216,998 - MMP_RS06315 0.61 -3.5
1,216,999 + MMP_RS06315 0.61 -4.0
1,217,233 - -1.3
1,217,236 + -3.0
1,217,386 - MMP_RS06320 0.19 -0.0
1,217,391 + MMP_RS06320 0.20 +1.2
1,217,396 - MMP_RS06320 0.21 -0.6
1,217,396 - MMP_RS06320 0.21 +0.2
1,217,397 + MMP_RS06320 0.21 -0.2
1,217,401 - MMP_RS06320 0.21 +0.1
1,217,472 - MMP_RS06320 0.32 -0.1

Or see this region's nucleotide sequence