Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01375 and MMP_RS01380 are separated by 20 nucleotides MMP_RS01380 and MMP_RS01385 are separated by 35 nucleotides MMP_RS01385 and MMP_RS01390 are separated by 11 nucleotides MMP_RS01390 and MMP_RS01395 are separated by 131 nucleotides
MMP_RS01375: MMP_RS01375 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 255,837 to 257,360
_RS01375
MMP_RS01380: MMP_RS01380 - PHP domain-containing protein, at 257,381 to 258,280
_RS01380
MMP_RS01385: MMP_RS01385 - imidazole glycerol phosphate synthase subunit HisH, at 258,316 to 258,927
_RS01385
MMP_RS01390: MMP_RS01390 - TATA-box-binding protein, at 258,939 to 259,484
_RS01390
MMP_RS01395: MMP_RS01395 - 50S ribosomal protein P1, at 259,616 to 259,915
_RS01395
Position (kb) 258
259 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 257.354 kb on + strand at 257.354 kb on + strand at 257.358 kb on - strand at 257.395 kb on + strand at 257.415 kb on - strand at 257.444 kb on - strand at 257.619 kb on - strand, within MMP_RS01380 at 257.620 kb on + strand, within MMP_RS01380 at 257.839 kb on + strand, within MMP_RS01380 at 257.842 kb on - strand, within MMP_RS01380 at 258.008 kb on - strand, within MMP_RS01380 at 258.066 kb on + strand, within MMP_RS01380 at 258.121 kb on + strand, within MMP_RS01380 at 258.126 kb on + strand, within MMP_RS01380 at 258.176 kb on - strand, within MMP_RS01380 at 258.220 kb on - strand at 258.223 kb on + strand at 258.309 kb on - strand at 258.314 kb on + strand at 258.314 kb on + strand at 258.865 kb on - strand, within MMP_RS01385 at 258.908 kb on - strand at 258.943 kb on - strand at 258.974 kb on - strand at 258.993 kb on - strand at 258.997 kb on - strand at 258.998 kb on + strand at 258.998 kb on + strand at 259.147 kb on + strand at 259.525 kb on + strand at 259.903 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 10 generations remove 257,354 + -0.2 257,354 + -0.0 257,358 - -0.8 257,395 + -5.6 257,415 - -5.6 257,444 - -3.3 257,619 - MMP_RS01380 0.26 -3.3 257,620 + MMP_RS01380 0.27 -3.4 257,839 + MMP_RS01380 0.51 -2.7 257,842 - MMP_RS01380 0.51 -3.9 258,008 - MMP_RS01380 0.70 -3.0 258,066 + MMP_RS01380 0.76 -4.4 258,121 + MMP_RS01380 0.82 -4.0 258,126 + MMP_RS01380 0.83 -1.4 258,176 - MMP_RS01380 0.88 -2.5 258,220 - -2.0 258,223 + -2.6 258,309 - +0.1 258,314 + -0.1 258,314 + -0.3 258,865 - MMP_RS01385 0.90 -2.6 258,908 - -3.3 258,943 - -2.8 258,974 - -4.5 258,993 - -4.2 258,997 - -3.4 258,998 + -3.0 258,998 + -3.8 259,147 + -4.2 259,525 + -2.4 259,903 + -2.8
Or see this region's nucleotide sequence