Experiment: L-Glutamine (N); ShewMM media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11065 and EX31_RS26000 are separated by 14 nucleotides EX31_RS26000 and EX31_RS11070 are separated by 36 nucleotides EX31_RS11070 and EX31_RS11075 are separated by 223 nucleotides EX31_RS11075 and EX31_RS11080 are separated by 58 nucleotides
EX31_RS11065: EX31_RS11065 - TetR/AcrR family transcriptional regulator, at 143,965 to 144,528
_RS11065
EX31_RS26000: EX31_RS26000 - GntR family transcriptional regulator, at 144,543 to 144,644
_RS26000
EX31_RS11070: EX31_RS11070 - DUF2058 domain-containing protein, at 144,681 to 145,220
_RS11070
EX31_RS11075: EX31_RS11075 - putative motility protein, at 145,444 to 145,632
_RS11075
EX31_RS11080: EX31_RS11080 - isopenicillin N synthase family oxygenase, at 145,691 to 146,695
_RS11080
Position (kb) 145
146 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.544 kb on + strand at 144.544 kb on + strand at 144.545 kb on - strand at 144.545 kb on - strand at 144.545 kb on - strand at 144.545 kb on - strand at 144.549 kb on - strand at 144.549 kb on - strand at 144.597 kb on + strand, within EX31_RS26000 at 144.598 kb on - strand, within EX31_RS26000 at 144.598 kb on - strand, within EX31_RS26000 at 144.601 kb on + strand, within EX31_RS26000 at 144.601 kb on + strand, within EX31_RS26000 at 144.602 kb on - strand, within EX31_RS26000 at 144.649 kb on + strand at 144.682 kb on + strand at 144.719 kb on - strand at 144.763 kb on - strand, within EX31_RS11070 at 144.763 kb on - strand, within EX31_RS11070 at 144.765 kb on + strand, within EX31_RS11070 at 144.765 kb on + strand, within EX31_RS11070 at 144.765 kb on + strand, within EX31_RS11070 at 144.766 kb on - strand, within EX31_RS11070 at 144.766 kb on - strand, within EX31_RS11070 at 144.766 kb on - strand, within EX31_RS11070 at 144.770 kb on + strand, within EX31_RS11070 at 144.770 kb on + strand, within EX31_RS11070 at 144.771 kb on - strand, within EX31_RS11070 at 144.771 kb on - strand, within EX31_RS11070 at 144.771 kb on - strand, within EX31_RS11070 at 144.771 kb on - strand, within EX31_RS11070 at 144.771 kb on - strand, within EX31_RS11070 at 144.819 kb on - strand, within EX31_RS11070 at 144.826 kb on + strand, within EX31_RS11070 at 144.827 kb on - strand, within EX31_RS11070 at 144.827 kb on - strand, within EX31_RS11070 at 144.882 kb on - strand, within EX31_RS11070 at 144.906 kb on - strand, within EX31_RS11070 at 144.906 kb on - strand, within EX31_RS11070 at 144.932 kb on + strand, within EX31_RS11070 at 144.933 kb on - strand, within EX31_RS11070 at 144.933 kb on - strand, within EX31_RS11070 at 145.014 kb on - strand, within EX31_RS11070 at 145.014 kb on - strand, within EX31_RS11070 at 145.014 kb on - strand, within EX31_RS11070 at 145.016 kb on - strand, within EX31_RS11070 at 145.016 kb on - strand, within EX31_RS11070 at 145.023 kb on - strand, within EX31_RS11070 at 145.023 kb on - strand, within EX31_RS11070 at 145.086 kb on - strand, within EX31_RS11070 at 145.177 kb on - strand at 145.177 kb on - strand at 145.203 kb on + strand at 145.204 kb on - strand at 145.231 kb on - strand at 145.243 kb on + strand at 145.244 kb on - strand at 145.244 kb on - strand at 145.258 kb on + strand at 145.264 kb on + strand at 145.265 kb on - strand at 145.265 kb on - strand at 145.265 kb on - strand at 145.286 kb on + strand at 145.349 kb on + strand at 145.349 kb on + strand at 145.365 kb on + strand at 145.365 kb on + strand at 145.366 kb on - strand at 145.418 kb on + strand at 145.418 kb on + strand at 145.419 kb on - strand at 145.419 kb on - strand at 145.419 kb on - strand at 145.419 kb on - strand at 145.426 kb on - strand at 145.426 kb on - strand at 145.483 kb on - strand, within EX31_RS11075 at 145.485 kb on + strand, within EX31_RS11075 at 145.485 kb on + strand, within EX31_RS11075 at 145.486 kb on - strand, within EX31_RS11075 at 145.486 kb on - strand, within EX31_RS11075 at 145.486 kb on - strand, within EX31_RS11075 at 145.516 kb on - strand, within EX31_RS11075 at 145.586 kb on + strand, within EX31_RS11075 at 145.594 kb on - strand, within EX31_RS11075 at 145.614 kb on + strand at 145.620 kb on + strand at 145.682 kb on + strand at 145.682 kb on + strand at 145.731 kb on + strand at 145.792 kb on + strand, within EX31_RS11080 at 145.793 kb on - strand, within EX31_RS11080 at 145.833 kb on + strand, within EX31_RS11080 at 146.094 kb on + strand, within EX31_RS11080 at 146.094 kb on + strand, within EX31_RS11080 at 146.095 kb on - strand, within EX31_RS11080 at 146.095 kb on - strand, within EX31_RS11080 at 146.095 kb on - strand, within EX31_RS11080 at 146.095 kb on - strand, within EX31_RS11080 at 146.097 kb on + strand, within EX31_RS11080 at 146.097 kb on + strand, within EX31_RS11080 at 146.117 kb on - strand, within EX31_RS11080 at 146.117 kb on - strand, within EX31_RS11080 at 146.354 kb on + strand, within EX31_RS11080 at 146.355 kb on - strand, within EX31_RS11080 at 146.366 kb on - strand, within EX31_RS11080
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; shaking remove 144,544 + +0.6 144,544 + +0.9 144,545 - +0.6 144,545 - -1.2 144,545 - +1.0 144,545 - +0.3 144,549 - +0.5 144,549 - -0.6 144,597 + EX31_RS26000 0.53 +0.6 144,598 - EX31_RS26000 0.54 +1.2 144,598 - EX31_RS26000 0.54 +0.3 144,601 + EX31_RS26000 0.57 +0.6 144,601 + EX31_RS26000 0.57 +0.5 144,602 - EX31_RS26000 0.58 +0.6 144,649 + -0.2 144,682 + -0.2 144,719 - +0.2 144,763 - EX31_RS11070 0.15 -1.2 144,763 - EX31_RS11070 0.15 +1.4 144,765 + EX31_RS11070 0.16 +1.6 144,765 + EX31_RS11070 0.16 +0.4 144,765 + EX31_RS11070 0.16 -0.2 144,766 - EX31_RS11070 0.16 +0.1 144,766 - EX31_RS11070 0.16 +0.8 144,766 - EX31_RS11070 0.16 -1.9 144,770 + EX31_RS11070 0.16 +0.1 144,770 + EX31_RS11070 0.16 -1.3 144,771 - EX31_RS11070 0.17 -1.0 144,771 - EX31_RS11070 0.17 -0.5 144,771 - EX31_RS11070 0.17 +0.1 144,771 - EX31_RS11070 0.17 -0.6 144,771 - EX31_RS11070 0.17 -0.1 144,819 - EX31_RS11070 0.26 +0.2 144,826 + EX31_RS11070 0.27 -0.7 144,827 - EX31_RS11070 0.27 +1.6 144,827 - EX31_RS11070 0.27 +1.2 144,882 - EX31_RS11070 0.37 +0.4 144,906 - EX31_RS11070 0.42 -1.1 144,906 - EX31_RS11070 0.42 -0.3 144,932 + EX31_RS11070 0.46 +1.4 144,933 - EX31_RS11070 0.47 +0.6 144,933 - EX31_RS11070 0.47 +1.6 145,014 - EX31_RS11070 0.62 -2.2 145,014 - EX31_RS11070 0.62 +1.8 145,014 - EX31_RS11070 0.62 +0.3 145,016 - EX31_RS11070 0.62 +1.5 145,016 - EX31_RS11070 0.62 +0.4 145,023 - EX31_RS11070 0.63 +2.1 145,023 - EX31_RS11070 0.63 -0.2 145,086 - EX31_RS11070 0.75 -0.0 145,177 - +0.6 145,177 - +0.1 145,203 + -1.0 145,204 - +0.6 145,231 - -0.3 145,243 + -0.8 145,244 - +0.9 145,244 - +0.2 145,258 + +0.2 145,264 + -0.5 145,265 - -0.2 145,265 - +0.6 145,265 - +0.8 145,286 + +0.4 145,349 + -1.1 145,349 + -0.0 145,365 + -0.5 145,365 + +0.3 145,366 - -0.5 145,418 + -0.7 145,418 + +0.0 145,419 - +1.0 145,419 - +0.5 145,419 - +1.0 145,419 - -1.1 145,426 - -0.5 145,426 - +0.4 145,483 - EX31_RS11075 0.21 -1.2 145,485 + EX31_RS11075 0.22 -0.9 145,485 + EX31_RS11075 0.22 -1.2 145,486 - EX31_RS11075 0.22 -1.1 145,486 - EX31_RS11075 0.22 -1.4 145,486 - EX31_RS11075 0.22 -1.5 145,516 - EX31_RS11075 0.38 +0.5 145,586 + EX31_RS11075 0.75 +0.3 145,594 - EX31_RS11075 0.79 +0.1 145,614 + +0.8 145,620 + -0.4 145,682 + +1.2 145,682 + +0.3 145,731 + +0.2 145,792 + EX31_RS11080 0.10 +1.6 145,793 - EX31_RS11080 0.10 +1.0 145,833 + EX31_RS11080 0.14 +1.9 146,094 + EX31_RS11080 0.40 +1.8 146,094 + EX31_RS11080 0.40 +0.6 146,095 - EX31_RS11080 0.40 -0.3 146,095 - EX31_RS11080 0.40 +1.3 146,095 - EX31_RS11080 0.40 +1.0 146,095 - EX31_RS11080 0.40 -0.4 146,097 + EX31_RS11080 0.40 +0.6 146,097 + EX31_RS11080 0.40 +0.6 146,117 - EX31_RS11080 0.42 +1.4 146,117 - EX31_RS11080 0.42 -1.5 146,354 + EX31_RS11080 0.66 +0.9 146,355 - EX31_RS11080 0.66 +0.3 146,366 - EX31_RS11080 0.67 +0.8
Or see this region's nucleotide sequence