Strain Fitness in Rahnella sp. WP5 around EX31_RS09915

Experiment: L-Glutamine (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09910 and EX31_RS09915 are separated by 18 nucleotidesEX31_RS09915 and EX31_RS09920 are separated by 16 nucleotides EX31_RS09910: EX31_RS09910 - YciK family oxidoreductase, at 191,847 to 192,608 _RS09910 EX31_RS09915: EX31_RS09915 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 192,627 to 193,217 _RS09915 EX31_RS09920: EX31_RS09920 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 193,234 to 194,277 _RS09920 Position (kb) 192 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 191.686 kb on + strandat 191.686 kb on + strandat 191.686 kb on + strandat 191.688 kb on + strandat 191.688 kb on + strandat 191.688 kb on + strandat 191.689 kb on - strandat 191.754 kb on + strandat 191.754 kb on + strandat 191.754 kb on + strandat 191.780 kb on - strandat 191.834 kb on - strandat 191.861 kb on + strandat 191.940 kb on + strand, within EX31_RS09910at 191.940 kb on + strand, within EX31_RS09910at 191.940 kb on + strand, within EX31_RS09910at 191.940 kb on + strand, within EX31_RS09910at 191.940 kb on + strand, within EX31_RS09910at 191.940 kb on + strand, within EX31_RS09910at 191.988 kb on - strand, within EX31_RS09910at 192.023 kb on + strand, within EX31_RS09910at 192.023 kb on + strand, within EX31_RS09910at 192.023 kb on + strand, within EX31_RS09910at 192.045 kb on + strand, within EX31_RS09910at 192.046 kb on - strand, within EX31_RS09910at 192.182 kb on + strand, within EX31_RS09910at 192.182 kb on + strand, within EX31_RS09910at 192.233 kb on + strand, within EX31_RS09910at 192.369 kb on - strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.485 kb on + strand, within EX31_RS09910at 192.485 kb on + strand, within EX31_RS09910at 192.506 kb on + strand, within EX31_RS09910at 192.507 kb on - strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.510 kb on - strand, within EX31_RS09910at 192.510 kb on - strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.525 kb on + strand, within EX31_RS09910at 192.525 kb on + strand, within EX31_RS09910at 192.606 kb on + strandat 192.607 kb on - strandat 192.644 kb on + strandat 192.715 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.821 kb on + strand, within EX31_RS09915at 192.917 kb on + strand, within EX31_RS09915at 192.917 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.989 kb on - strand, within EX31_RS09915at 192.989 kb on - strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.019 kb on + strand, within EX31_RS09915at 193.019 kb on + strand, within EX31_RS09915at 193.019 kb on + strand, within EX31_RS09915at 193.020 kb on - strand, within EX31_RS09915at 193.191 kb on - strandat 193.236 kb on - strandat 193.358 kb on + strand, within EX31_RS09920at 193.414 kb on - strand, within EX31_RS09920at 193.414 kb on - strand, within EX31_RS09920at 193.425 kb on + strand, within EX31_RS09920at 193.430 kb on + strand, within EX31_RS09920at 193.431 kb on - strand, within EX31_RS09920at 193.431 kb on - strand, within EX31_RS09920at 193.612 kb on + strand, within EX31_RS09920at 193.644 kb on + strand, within EX31_RS09920at 193.740 kb on + strand, within EX31_RS09920at 193.740 kb on + strand, within EX31_RS09920at 193.872 kb on + strand, within EX31_RS09920at 193.873 kb on - strand, within EX31_RS09920

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; shaking
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191,686 + -0.3
191,686 + -1.9
191,686 + -0.0
191,688 + -0.1
191,688 + +0.3
191,688 + -0.2
191,689 - -0.5
191,754 + -1.1
191,754 + +1.5
191,754 + -0.3
191,780 - -2.2
191,834 - -1.8
191,861 + -0.8
191,940 + EX31_RS09910 0.12 +1.3
191,940 + EX31_RS09910 0.12 -0.6
191,940 + EX31_RS09910 0.12 -0.8
191,940 + EX31_RS09910 0.12 +0.8
191,940 + EX31_RS09910 0.12 +1.5
191,940 + EX31_RS09910 0.12 -0.5
191,988 - EX31_RS09910 0.19 +1.3
192,023 + EX31_RS09910 0.23 -2.3
192,023 + EX31_RS09910 0.23 +0.8
192,023 + EX31_RS09910 0.23 +1.9
192,045 + EX31_RS09910 0.26 -1.3
192,046 - EX31_RS09910 0.26 +0.3
192,182 + EX31_RS09910 0.44 +1.2
192,182 + EX31_RS09910 0.44 -0.4
192,233 + EX31_RS09910 0.51 +1.7
192,369 - EX31_RS09910 0.69 +0.0
192,395 + EX31_RS09910 0.72 -1.3
192,395 + EX31_RS09910 0.72 -1.5
192,395 + EX31_RS09910 0.72 +0.5
192,395 + EX31_RS09910 0.72 +0.5
192,395 + EX31_RS09910 0.72 +0.6
192,395 + EX31_RS09910 0.72 -0.1
192,395 + EX31_RS09910 0.72 -0.5
192,395 + EX31_RS09910 0.72 +0.7
192,395 + EX31_RS09910 0.72 -0.1
192,395 + EX31_RS09910 0.72 +0.1
192,395 + EX31_RS09910 0.72 -0.1
192,395 + EX31_RS09910 0.72 -1.2
192,395 + EX31_RS09910 0.72 +0.6
192,396 - EX31_RS09910 0.72 +0.8
192,396 - EX31_RS09910 0.72 -0.1
192,396 - EX31_RS09910 0.72 -0.3
192,396 - EX31_RS09910 0.72 -1.2
192,396 - EX31_RS09910 0.72 -0.6
192,396 - EX31_RS09910 0.72 +0.5
192,485 + EX31_RS09910 0.84 +0.4
192,485 + EX31_RS09910 0.84 +0.2
192,506 + EX31_RS09910 0.86 -0.6
192,507 - EX31_RS09910 0.87 -0.8
192,509 + EX31_RS09910 0.87 -0.2
192,509 + EX31_RS09910 0.87 +1.9
192,509 + EX31_RS09910 0.87 +0.6
192,509 + EX31_RS09910 0.87 +1.0
192,509 + EX31_RS09910 0.87 -0.8
192,509 + EX31_RS09910 0.87 -1.4
192,509 + EX31_RS09910 0.87 -0.3
192,510 - EX31_RS09910 0.87 -0.5
192,510 - EX31_RS09910 0.87 -0.5
192,519 + EX31_RS09910 0.88 +0.8
192,519 + EX31_RS09910 0.88 -0.9
192,519 + EX31_RS09910 0.88 -0.7
192,519 + EX31_RS09910 0.88 +0.1
192,519 + EX31_RS09910 0.88 -0.1
192,519 + EX31_RS09910 0.88 +1.1
192,525 + EX31_RS09910 0.89 +0.8
192,525 + EX31_RS09910 0.89 +0.5
192,606 + +0.3
192,607 - +0.0
192,644 + +0.5
192,715 + EX31_RS09915 0.15 -2.1
192,724 + EX31_RS09915 0.16 -0.6
192,724 + EX31_RS09915 0.16 -0.5
192,724 + EX31_RS09915 0.16 -0.5
192,724 + EX31_RS09915 0.16 -2.1
192,724 + EX31_RS09915 0.16 -0.2
192,724 + EX31_RS09915 0.16 -0.5
192,821 + EX31_RS09915 0.33 -0.5
192,917 + EX31_RS09915 0.49 -0.6
192,917 + EX31_RS09915 0.49 -1.6
192,988 + EX31_RS09915 0.61 -1.2
192,988 + EX31_RS09915 0.61 -0.4
192,988 + EX31_RS09915 0.61 +0.4
192,988 + EX31_RS09915 0.61 -0.2
192,988 + EX31_RS09915 0.61 -1.1
192,988 + EX31_RS09915 0.61 -0.5
192,988 + EX31_RS09915 0.61 -0.3
192,989 - EX31_RS09915 0.61 -2.6
192,989 - EX31_RS09915 0.61 -1.9
193,017 + EX31_RS09915 0.66 +1.5
193,017 + EX31_RS09915 0.66 -0.6
193,017 + EX31_RS09915 0.66 +0.5
193,017 + EX31_RS09915 0.66 -0.8
193,017 + EX31_RS09915 0.66 -1.1
193,017 + EX31_RS09915 0.66 -1.1
193,017 + EX31_RS09915 0.66 -1.5
193,017 + EX31_RS09915 0.66 -1.5
193,017 + EX31_RS09915 0.66 +1.5
193,017 + EX31_RS09915 0.66 -0.3
193,017 + EX31_RS09915 0.66 -0.1
193,017 + EX31_RS09915 0.66 -0.6
193,017 + EX31_RS09915 0.66 +0.6
193,017 + EX31_RS09915 0.66 -3.1
193,017 + EX31_RS09915 0.66 -1.2
193,017 + EX31_RS09915 0.66 -0.8
193,017 + EX31_RS09915 0.66 -0.1
193,017 + EX31_RS09915 0.66 -0.8
193,018 - EX31_RS09915 0.66 +1.3
193,018 - EX31_RS09915 0.66 -1.3
193,018 - EX31_RS09915 0.66 -0.4
193,018 - EX31_RS09915 0.66 -0.5
193,018 - EX31_RS09915 0.66 -0.1
193,018 - EX31_RS09915 0.66 +0.7
193,018 - EX31_RS09915 0.66 -1.9
193,019 + EX31_RS09915 0.66 -1.3
193,019 + EX31_RS09915 0.66 -1.3
193,019 + EX31_RS09915 0.66 -2.6
193,020 - EX31_RS09915 0.66 -1.3
193,191 - +0.5
193,236 - +1.6
193,358 + EX31_RS09920 0.12 +1.5
193,414 - EX31_RS09920 0.17 +0.1
193,414 - EX31_RS09920 0.17 -0.6
193,425 + EX31_RS09920 0.18 +0.5
193,430 + EX31_RS09920 0.19 +2.1
193,431 - EX31_RS09920 0.19 +1.2
193,431 - EX31_RS09920 0.19 +0.4
193,612 + EX31_RS09920 0.36 -1.6
193,644 + EX31_RS09920 0.39 +2.1
193,740 + EX31_RS09920 0.48 +0.8
193,740 + EX31_RS09920 0.48 -0.1
193,872 + EX31_RS09920 0.61 -0.4
193,873 - EX31_RS09920 0.61 +0.5

Or see this region's nucleotide sequence