Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03469 and CCNA_03909 overlap by 4 nucleotides CCNA_03909 and CCNA_03471 are separated by 141 nucleotides
CCNA_03469: CCNA_03469 - arginyl-tRNA synthetase, at 3,635,003 to 3,636,805
_03469
CCNA_03909: CCNA_03909 - hypothetical protein, at 3,636,802 to 3,637,524
_03909
CCNA_03471: CCNA_03471 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,637,666 to 3,638,625
_03471
Position (kb)
3636
3637
3638 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3636.829 kb on + strand at 3636.837 kb on - strand at 3636.837 kb on - strand at 3636.844 kb on + strand at 3636.847 kb on - strand at 3636.849 kb on + strand at 3636.852 kb on - strand at 3636.853 kb on - strand at 3636.857 kb on - strand at 3636.873 kb on + strand at 3636.881 kb on - strand, within CCNA_03909 at 3636.886 kb on - strand, within CCNA_03909 at 3636.941 kb on - strand, within CCNA_03909 at 3636.941 kb on - strand, within CCNA_03909 at 3636.973 kb on - strand, within CCNA_03909 at 3637.104 kb on + strand, within CCNA_03909 at 3637.168 kb on - strand, within CCNA_03909 at 3637.168 kb on - strand, within CCNA_03909 at 3637.168 kb on - strand, within CCNA_03909 at 3637.224 kb on - strand, within CCNA_03909 at 3637.236 kb on - strand, within CCNA_03909 at 3637.322 kb on - strand, within CCNA_03909 at 3637.322 kb on - strand, within CCNA_03909 at 3637.337 kb on + strand, within CCNA_03909 at 3637.361 kb on + strand, within CCNA_03909 at 3637.369 kb on - strand, within CCNA_03909 at 3637.369 kb on - strand, within CCNA_03909 at 3637.584 kb on - strand at 3637.604 kb on - strand at 3637.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 3,636,829 + -0.3 3,636,837 - +0.1 3,636,837 - -2.3 3,636,844 + -2.7 3,636,847 - -3.1 3,636,849 + -1.4 3,636,852 - -1.6 3,636,853 - -1.6 3,636,857 - -1.3 3,636,873 + +2.2 3,636,881 - CCNA_03909 0.11 -2.8 3,636,886 - CCNA_03909 0.12 +0.9 3,636,941 - CCNA_03909 0.19 -3.2 3,636,941 - CCNA_03909 0.19 -2.1 3,636,973 - CCNA_03909 0.24 -1.3 3,637,104 + CCNA_03909 0.42 -0.4 3,637,168 - CCNA_03909 0.51 -2.1 3,637,168 - CCNA_03909 0.51 -2.2 3,637,168 - CCNA_03909 0.51 -2.0 3,637,224 - CCNA_03909 0.58 -1.8 3,637,236 - CCNA_03909 0.60 -1.2 3,637,322 - CCNA_03909 0.72 -2.6 3,637,322 - CCNA_03909 0.72 -3.0 3,637,337 + CCNA_03909 0.74 -0.0 3,637,361 + CCNA_03909 0.77 -1.2 3,637,369 - CCNA_03909 0.78 -2.8 3,637,369 - CCNA_03909 0.78 -1.7 3,637,584 - -2.6 3,637,604 - -1.1 3,637,634 - -1.5
Or see this region's nucleotide sequence