Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03876

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03875 and CCNA_03876 are separated by 81 nucleotidesCCNA_03876 and CCNA_03877 are separated by 258 nucleotidesCCNA_03877 and CCNA_03878 overlap by 52 nucleotides CCNA_03875: CCNA_03875 - quinone oxidoreductase, at 4,037,386 to 4,038,351 _03875 CCNA_03876: CCNA_03876 - transcription termination factor rho, at 4,038,433 to 4,039,866 _03876 CCNA_03877: CCNA_03877 - conserved hypothetical membrane spanning protein, at 4,040,125 to 4,040,640 _03877 CCNA_03878: CCNA_03878 - ferrochelatase, at 4,040,589 to 4,041,632 _03878 Position (kb) 4038 4039 4040Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4037.433 kb on - strandat 4037.433 kb on - strandat 4037.449 kb on - strandat 4037.451 kb on + strandat 4037.459 kb on - strandat 4037.470 kb on - strandat 4037.475 kb on - strandat 4037.497 kb on + strand, within CCNA_03875at 4037.497 kb on + strand, within CCNA_03875at 4037.505 kb on - strand, within CCNA_03875at 4037.509 kb on + strand, within CCNA_03875at 4037.516 kb on + strand, within CCNA_03875at 4037.524 kb on - strand, within CCNA_03875at 4037.564 kb on + strand, within CCNA_03875at 4037.584 kb on + strand, within CCNA_03875at 4037.592 kb on - strand, within CCNA_03875at 4037.613 kb on + strand, within CCNA_03875at 4037.613 kb on + strandat 4037.613 kb on + strand, within CCNA_03875at 4037.621 kb on - strand, within CCNA_03875at 4037.621 kb on - strand, within CCNA_03875at 4037.630 kb on + strand, within CCNA_03875at 4037.643 kb on - strand, within CCNA_03875at 4037.717 kb on + strand, within CCNA_03875at 4037.719 kb on - strand, within CCNA_03875at 4037.726 kb on - strand, within CCNA_03875at 4037.742 kb on + strand, within CCNA_03875at 4037.742 kb on + strand, within CCNA_03875at 4037.742 kb on + strand, within CCNA_03875at 4037.742 kb on + strand, within CCNA_03875at 4037.742 kb on + strand, within CCNA_03875at 4037.748 kb on + strand, within CCNA_03875at 4037.750 kb on - strand, within CCNA_03875at 4037.750 kb on - strand, within CCNA_03875at 4037.750 kb on - strand, within CCNA_03875at 4037.806 kb on + strand, within CCNA_03875at 4037.806 kb on + strand, within CCNA_03875at 4037.814 kb on - strand, within CCNA_03875at 4037.814 kb on - strand, within CCNA_03875at 4037.844 kb on - strand, within CCNA_03875at 4037.863 kb on + strand, within CCNA_03875at 4037.864 kb on - strand, within CCNA_03875at 4037.873 kb on + strand, within CCNA_03875at 4037.886 kb on - strand, within CCNA_03875at 4037.897 kb on - strand, within CCNA_03875at 4037.907 kb on + strand, within CCNA_03875at 4038.077 kb on - strand, within CCNA_03875at 4038.103 kb on + strand, within CCNA_03875at 4038.111 kb on - strand, within CCNA_03875at 4038.116 kb on + strand, within CCNA_03875at 4038.161 kb on + strand, within CCNA_03875at 4038.161 kb on + strand, within CCNA_03875at 4038.236 kb on + strand, within CCNA_03875at 4038.263 kb on + strandat 4038.270 kb on - strandat 4038.270 kb on - strandat 4038.288 kb on - strandat 4038.293 kb on - strandat 4038.304 kb on + strandat 4038.329 kb on + strandat 4038.337 kb on - strandat 4038.337 kb on - strandat 4038.342 kb on - strandat 4038.347 kb on + strandat 4038.361 kb on + strandat 4038.361 kb on + strandat 4038.387 kb on + strandat 4038.387 kb on + strandat 4038.429 kb on + strandat 4038.429 kb on + strandat 4039.609 kb on - strand, within CCNA_03876at 4039.874 kb on - strandat 4039.881 kb on - strandat 4039.900 kb on - strandat 4039.961 kb on - strandat 4039.967 kb on + strandat 4040.017 kb on + strandat 4040.045 kb on + strandat 4040.116 kb on + strandat 4040.138 kb on - strandat 4040.147 kb on - strandat 4040.606 kb on - strandat 4040.625 kb on - strandat 4040.625 kb on - strandat 4040.640 kb on - strandat 4040.640 kb on - strandat 4040.664 kb on - strandat 4040.706 kb on - strand, within CCNA_03878

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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4,037,433 - +0.2
4,037,433 - +0.5
4,037,449 - +0.1
4,037,451 + -1.5
4,037,459 - +0.2
4,037,470 - -2.7
4,037,475 - -0.7
4,037,497 + CCNA_03875 0.11 -0.5
4,037,497 + CCNA_03875 0.11 -1.2
4,037,505 - CCNA_03875 0.12 -0.4
4,037,509 + CCNA_03875 0.13 +1.5
4,037,516 + CCNA_03875 0.13 +0.8
4,037,524 - CCNA_03875 0.14 -2.3
4,037,564 + CCNA_03875 0.18 +0.5
4,037,584 + CCNA_03875 0.20 +0.6
4,037,592 - CCNA_03875 0.21 +0.8
4,037,613 + CCNA_03875 0.23 -3.2
4,037,613 + +2.2
4,037,613 + CCNA_03875 0.23 -0.0
4,037,621 - CCNA_03875 0.24 +1.2
4,037,621 - CCNA_03875 0.24 +1.6
4,037,630 + CCNA_03875 0.25 +0.6
4,037,643 - CCNA_03875 0.27 +0.3
4,037,717 + CCNA_03875 0.34 -0.6
4,037,719 - CCNA_03875 0.34 +2.4
4,037,726 - CCNA_03875 0.35 -0.5
4,037,742 + CCNA_03875 0.37 -0.1
4,037,742 + CCNA_03875 0.37 +1.3
4,037,742 + CCNA_03875 0.37 +0.1
4,037,742 + CCNA_03875 0.37 -0.4
4,037,742 + CCNA_03875 0.37 -0.5
4,037,748 + CCNA_03875 0.37 -0.9
4,037,750 - CCNA_03875 0.38 +0.4
4,037,750 - CCNA_03875 0.38 +1.8
4,037,750 - CCNA_03875 0.38 -1.1
4,037,806 + CCNA_03875 0.43 +0.4
4,037,806 + CCNA_03875 0.43 -0.4
4,037,814 - CCNA_03875 0.44 +2.3
4,037,814 - CCNA_03875 0.44 +0.3
4,037,844 - CCNA_03875 0.47 +0.2
4,037,863 + CCNA_03875 0.49 +2.5
4,037,864 - CCNA_03875 0.49 -0.4
4,037,873 + CCNA_03875 0.50 -0.6
4,037,886 - CCNA_03875 0.52 +0.2
4,037,897 - CCNA_03875 0.53 -1.6
4,037,907 + CCNA_03875 0.54 -0.3
4,038,077 - CCNA_03875 0.72 +1.5
4,038,103 + CCNA_03875 0.74 -1.0
4,038,111 - CCNA_03875 0.75 +0.0
4,038,116 + CCNA_03875 0.76 -0.9
4,038,161 + CCNA_03875 0.80 -0.8
4,038,161 + CCNA_03875 0.80 -0.2
4,038,236 + CCNA_03875 0.88 -0.9
4,038,263 + -0.4
4,038,270 - -2.5
4,038,270 - +0.3
4,038,288 - +0.5
4,038,293 - +0.2
4,038,304 + -0.6
4,038,329 + -2.5
4,038,337 - +0.4
4,038,337 - -2.0
4,038,342 - +0.5
4,038,347 + -0.5
4,038,361 + +1.0
4,038,361 + +1.8
4,038,387 + +0.7
4,038,387 + +0.2
4,038,429 + -0.4
4,038,429 + +0.8
4,039,609 - CCNA_03876 0.82 -2.7
4,039,874 - -2.7
4,039,881 - -3.2
4,039,900 - -1.5
4,039,961 - -1.0
4,039,967 + -0.8
4,040,017 + -1.5
4,040,045 + -0.3
4,040,116 + -2.4
4,040,138 - -0.3
4,040,147 - -1.0
4,040,606 - -0.3
4,040,625 - -2.1
4,040,625 - -1.1
4,040,640 - +2.5
4,040,640 - -0.4
4,040,664 - -0.8
4,040,706 - CCNA_03878 0.11 +1.1

Or see this region's nucleotide sequence