Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03524 and CCNA_03525 are separated by 9 nucleotides CCNA_03525 and CCNA_03526 overlap by 54 nucleotides CCNA_03526 and CCNA_03527 are separated by 18 nucleotides CCNA_03527 and CCNA_03528 are separated by 142 nucleotides CCNA_03528 and CCNA_03529 are separated by 46 nucleotides
CCNA_03524: CCNA_03524 - di-/tripeptide transporter, at 3,681,121 to 3,683,001
_03524
CCNA_03525: CCNA_03525 - hypothetical protein, at 3,683,011 to 3,683,352
_03525
CCNA_03526: CCNA_03526 - hypothetical protein, at 3,683,299 to 3,683,442
_03526
CCNA_03527: CCNA_03527 - glutamate-cysteine ligase family 2, at 3,683,461 to 3,684,822
_03527
CCNA_03528: CCNA_03528 - RNA methyltransferase, at 3,684,965 to 3,685,681
_03528
CCNA_03529: CCNA_03529 - polyphosphate kinase 2, at 3,685,728 to 3,686,489
_03529
Position (kb)
3683
3684
3685 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3682.465 kb on + strand, within CCNA_03524 at 3682.465 kb on + strand, within CCNA_03524 at 3682.468 kb on - strand, within CCNA_03524 at 3682.547 kb on - strand, within CCNA_03524 at 3682.548 kb on - strand, within CCNA_03524 at 3682.579 kb on + strand, within CCNA_03524 at 3682.579 kb on + strand, within CCNA_03524 at 3682.627 kb on + strand, within CCNA_03524 at 3682.636 kb on - strand, within CCNA_03524 at 3682.733 kb on - strand, within CCNA_03524 at 3682.771 kb on - strand, within CCNA_03524 at 3682.794 kb on + strand, within CCNA_03524 at 3682.851 kb on - strand at 3682.915 kb on + strand at 3682.969 kb on + strand at 3683.098 kb on + strand, within CCNA_03525 at 3683.106 kb on - strand, within CCNA_03525 at 3683.166 kb on - strand, within CCNA_03525 at 3683.194 kb on - strand, within CCNA_03525 at 3683.209 kb on + strand, within CCNA_03525 at 3683.214 kb on + strand, within CCNA_03525 at 3683.214 kb on + strand, within CCNA_03525 at 3683.222 kb on - strand, within CCNA_03525 at 3683.237 kb on + strand, within CCNA_03525 at 3683.245 kb on - strand, within CCNA_03525 at 3683.245 kb on - strand, within CCNA_03525 at 3683.258 kb on + strand, within CCNA_03525 at 3683.302 kb on + strand at 3683.405 kb on + strand, within CCNA_03526 at 3683.410 kb on + strand, within CCNA_03526 at 3683.413 kb on - strand, within CCNA_03526 at 3683.413 kb on - strand, within CCNA_03526 at 3683.415 kb on + strand, within CCNA_03526 at 3683.458 kb on + strand at 3683.477 kb on + strand at 3683.477 kb on + strand at 3684.831 kb on + strand at 3684.836 kb on + strand at 3684.843 kb on - strand at 3684.851 kb on - strand at 3684.851 kb on - strand at 3684.870 kb on + strand at 3684.870 kb on + strand at 3684.871 kb on - strand at 3684.876 kb on - strand at 3684.910 kb on - strand at 3684.933 kb on + strand at 3684.933 kb on + strand at 3684.933 kb on + strand at 3684.941 kb on - strand at 3684.945 kb on + strand at 3684.945 kb on + strand at 3684.945 kb on + strand at 3684.945 kb on + strand at 3684.946 kb on + strand at 3684.953 kb on - strand at 3684.953 kb on - strand at 3684.953 kb on - strand at 3684.953 kb on - strand at 3684.953 kb on - strand at 3684.968 kb on + strand at 3684.985 kb on - strand at 3685.033 kb on + strand at 3685.037 kb on - strand, within CCNA_03528 at 3685.059 kb on - strand, within CCNA_03528 at 3685.066 kb on + strand, within CCNA_03528 at 3685.074 kb on - strand, within CCNA_03528 at 3685.121 kb on + strand, within CCNA_03528 at 3685.134 kb on - strand, within CCNA_03528 at 3685.144 kb on - strand, within CCNA_03528 at 3685.154 kb on - strand, within CCNA_03528 at 3685.216 kb on + strand, within CCNA_03528 at 3685.224 kb on - strand, within CCNA_03528 at 3685.296 kb on - strand, within CCNA_03528 at 3685.296 kb on - strand, within CCNA_03528 at 3685.350 kb on - strand, within CCNA_03528 at 3685.361 kb on + strand, within CCNA_03528 at 3685.370 kb on - strand, within CCNA_03528 at 3685.374 kb on - strand, within CCNA_03528 at 3685.410 kb on + strand, within CCNA_03528 at 3685.417 kb on - strand at 3685.425 kb on + strand, within CCNA_03528 at 3685.433 kb on - strand, within CCNA_03528 at 3685.433 kb on - strand, within CCNA_03528 at 3685.433 kb on - strand, within CCNA_03528 at 3685.437 kb on + strand, within CCNA_03528 at 3685.455 kb on - strand, within CCNA_03528 at 3685.467 kb on + strand, within CCNA_03528 at 3685.485 kb on + strand, within CCNA_03528 at 3685.486 kb on - strand, within CCNA_03528 at 3685.600 kb on + strand, within CCNA_03528 at 3685.604 kb on - strand, within CCNA_03528 at 3685.608 kb on - strand, within CCNA_03528 at 3685.662 kb on - strand at 3685.688 kb on + strand at 3685.696 kb on - strand at 3685.701 kb on - strand at 3685.712 kb on + strand at 3685.721 kb on - strand at 3685.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 3,682,465 + CCNA_03524 0.71 -0.4 3,682,465 + CCNA_03524 0.71 +0.2 3,682,468 - CCNA_03524 0.72 -2.7 3,682,547 - CCNA_03524 0.76 +0.7 3,682,548 - CCNA_03524 0.76 +1.0 3,682,579 + CCNA_03524 0.78 +0.6 3,682,579 + CCNA_03524 0.78 +1.8 3,682,627 + CCNA_03524 0.80 +2.2 3,682,636 - CCNA_03524 0.81 -1.2 3,682,733 - CCNA_03524 0.86 -0.6 3,682,771 - CCNA_03524 0.88 +2.4 3,682,794 + CCNA_03524 0.89 -0.6 3,682,851 - +0.2 3,682,915 + -0.9 3,682,969 + -1.8 3,683,098 + CCNA_03525 0.25 +2.6 3,683,106 - CCNA_03525 0.28 +1.7 3,683,166 - CCNA_03525 0.45 -0.4 3,683,194 - CCNA_03525 0.54 +1.4 3,683,209 + CCNA_03525 0.58 +0.1 3,683,214 + CCNA_03525 0.59 -1.0 3,683,214 + CCNA_03525 0.59 -0.4 3,683,222 - CCNA_03525 0.62 +0.6 3,683,237 + CCNA_03525 0.66 -1.5 3,683,245 - CCNA_03525 0.68 +0.4 3,683,245 - CCNA_03525 0.68 -1.0 3,683,258 + CCNA_03525 0.72 +1.8 3,683,302 + -2.7 3,683,405 + CCNA_03526 0.74 -2.1 3,683,410 + CCNA_03526 0.77 +3.2 3,683,413 - CCNA_03526 0.79 -3.0 3,683,413 - CCNA_03526 0.79 +2.1 3,683,415 + CCNA_03526 0.81 -2.6 3,683,458 + -1.9 3,683,477 + +1.1 3,683,477 + -2.5 3,684,831 + -0.8 3,684,836 + +1.9 3,684,843 - +0.7 3,684,851 - -1.2 3,684,851 - -1.4 3,684,870 + +0.1 3,684,870 + +1.1 3,684,871 - -0.0 3,684,876 - -2.6 3,684,910 - +0.4 3,684,933 + -0.8 3,684,933 + -3.1 3,684,933 + -0.1 3,684,941 - -0.0 3,684,945 + -2.2 3,684,945 + -1.2 3,684,945 + -0.5 3,684,945 + -2.1 3,684,946 + -2.5 3,684,953 - +0.6 3,684,953 - +1.3 3,684,953 - -0.6 3,684,953 - +0.0 3,684,953 - +2.0 3,684,968 + -0.8 3,684,985 - -0.5 3,685,033 + -2.3 3,685,037 - CCNA_03528 0.10 +0.1 3,685,059 - CCNA_03528 0.13 -2.8 3,685,066 + CCNA_03528 0.14 -1.2 3,685,074 - CCNA_03528 0.15 -2.3 3,685,121 + CCNA_03528 0.22 -2.0 3,685,134 - CCNA_03528 0.24 +0.8 3,685,144 - CCNA_03528 0.25 -3.7 3,685,154 - CCNA_03528 0.26 -2.5 3,685,216 + CCNA_03528 0.35 -1.8 3,685,224 - CCNA_03528 0.36 -0.3 3,685,296 - CCNA_03528 0.46 -2.9 3,685,296 - CCNA_03528 0.46 -2.3 3,685,350 - CCNA_03528 0.54 -1.3 3,685,361 + CCNA_03528 0.55 -2.0 3,685,370 - CCNA_03528 0.56 -1.1 3,685,374 - CCNA_03528 0.57 -2.1 3,685,410 + CCNA_03528 0.62 -0.2 3,685,417 - +1.0 3,685,425 + CCNA_03528 0.64 -0.6 3,685,433 - CCNA_03528 0.65 -2.8 3,685,433 - CCNA_03528 0.65 -0.4 3,685,433 - CCNA_03528 0.65 -1.7 3,685,437 + CCNA_03528 0.66 -0.7 3,685,455 - CCNA_03528 0.68 -0.7 3,685,467 + CCNA_03528 0.70 +2.6 3,685,485 + CCNA_03528 0.73 -1.3 3,685,486 - CCNA_03528 0.73 -3.6 3,685,600 + CCNA_03528 0.89 +0.6 3,685,604 - CCNA_03528 0.89 -1.6 3,685,608 - CCNA_03528 0.90 +1.4 3,685,662 - -0.7 3,685,688 + +0.2 3,685,696 - +0.6 3,685,701 - +0.7 3,685,712 + +0.3 3,685,721 - +0.2 3,685,759 - -0.8
Or see this region's nucleotide sequence