Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03102

Experiment: L-Alanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (N)
3,251,450	+				+1.0
3,251,450	+				+1.0
3,251,450	+				-2.9
3,251,458	-				+1.1
3,251,458	-				+0.0
3,251,486	-				-1.2
3,251,488	+				+2.2
3,251,488	+				+0.8
3,251,491	-				-2.1
3,251,528	+				-1.4
3,251,531	-				+2.1
3,251,536	-				+0.9
3,251,572	-		CCNA_03101	0.13	-0.7
3,251,582	-		CCNA_03101	0.14	-0.7
3,251,589	-		CCNA_03101	0.15	-1.6
3,251,671	-		CCNA_03101	0.24	+0.3
3,251,692	-		CCNA_03101	0.26	-0.6
3,251,722	-		CCNA_03101	0.29	+0.6
3,251,722	-		CCNA_03101	0.29	+0.5
3,251,740	+		CCNA_03101	0.31	-1.6
3,251,740	+		CCNA_03101	0.31	-0.8
3,251,748	-		CCNA_03101	0.32	+1.1
3,251,804	-		CCNA_03101	0.38	+0.3
3,251,830	-		CCNA_03101	0.41	-1.3
3,251,867	+		CCNA_03101	0.45	-0.9
3,251,907	-		CCNA_03101	0.49	-1.4
3,251,929	+		CCNA_03101	0.52	-1.6
3,251,929	-		CCNA_03101	0.52	-3.3
3,251,937	+		CCNA_03101	0.53	-0.2
3,251,942	+		CCNA_03101	0.53	+2.3
3,251,945	-		CCNA_03101	0.54	+0.2
3,251,945	-		CCNA_03101	0.54	-1.7
3,251,960	+		CCNA_03101	0.55	+0.0
3,251,960	+		CCNA_03101	0.55	+1.7
3,251,960	+		CCNA_03101	0.55	-1.7
3,251,960	+		CCNA_03101	0.55	-1.0
3,251,968	-		CCNA_03101	0.56	+0.3
3,251,968	-		CCNA_03101	0.56	-1.6
3,251,984	+		CCNA_03101	0.58	+0.6
3,251,987	-		CCNA_03101	0.58	+0.4
3,251,987	-				+2.3
3,251,992	-		CCNA_03101	0.59	+0.3
3,252,029	+		CCNA_03101	0.63	+0.5
3,252,029	+		CCNA_03101	0.63	-1.7
3,252,044	-		CCNA_03101	0.64	+0.4
3,252,112	+		CCNA_03101	0.72	+0.3
3,252,112	+		CCNA_03101	0.72	+0.8
3,252,149	-		CCNA_03101	0.76	+0.0
3,252,227	+		CCNA_03101	0.84	+0.6
3,252,230	-		CCNA_03101	0.85	-1.9
3,252,232	+		CCNA_03101	0.85	-1.1
3,252,232	+		CCNA_03101	0.85	-1.1
3,252,269	+		CCNA_03101	0.89	-0.6
3,252,281	+				-0.0
3,252,291	+				-2.5
3,252,298	-				-2.8
3,252,361	-				-2.0
3,252,374	+				-1.8
3,252,387	-				-3.1
3,252,387	-				-1.6
3,252,432	-				+0.7
3,252,442	-				+0.4
3,252,463	-				+0.5
3,252,482	-				-1.4
3,252,482	-				+1.4
3,252,503	+				-0.5
3,252,533	+		CCNA_03102	0.11	-0.2
3,252,611	+		CCNA_03102	0.16	+0.8
3,252,611	+		CCNA_03102	0.16	+1.5
3,252,619	-		CCNA_03102	0.17	+0.8
3,252,619	-		CCNA_03102	0.17	+1.9
3,252,619	-		CCNA_03102	0.17	-1.0
3,252,619	-		CCNA_03102	0.17	-0.2
3,252,619	-		CCNA_03102	0.17	+0.3
3,252,619	-		CCNA_03102	0.17	-2.0
3,252,717	+		CCNA_03102	0.24	-0.3
3,252,725	-		CCNA_03102	0.24	-0.8
3,252,725	-		CCNA_03102	0.24	-0.8
3,252,727	+		CCNA_03102	0.24	-2.6
3,252,774	-		CCNA_03102	0.27	-0.6
3,252,783	-		CCNA_03102	0.28	-2.1
3,252,784	+		CCNA_03102	0.28	-1.6
3,252,792	-		CCNA_03102	0.29	-0.3
3,252,792	-		CCNA_03102	0.29	+1.6
3,252,792	-		CCNA_03102	0.29	+0.1
3,252,817	+		CCNA_03102	0.30	+0.3
3,252,817	+		CCNA_03102	0.30	-0.5
3,252,825	-		CCNA_03102	0.31	-1.5
3,252,825	-		CCNA_03102	0.31	-1.7
3,252,825	-		CCNA_03102	0.31	-1.8
3,252,842	+		CCNA_03102	0.32	-3.6
3,252,851	-		CCNA_03102	0.33	+1.0
3,252,861	-		CCNA_03102	0.33	-1.5
3,252,899	-		CCNA_03102	0.36	-2.2
3,252,944	+		CCNA_03102	0.39	+1.9
3,252,944	+		CCNA_03102	0.39	-1.3
3,252,949	+		CCNA_03102	0.39	+0.0
3,252,949	+		CCNA_03102	0.39	-2.0
3,252,952	-		CCNA_03102	0.39	-0.9
3,252,957	-		CCNA_03102	0.40	-0.1
3,252,980	+		CCNA_03102	0.41	-1.1
3,252,980	+		CCNA_03102	0.41	+1.3
3,252,980	+		CCNA_03102	0.41	+3.6
3,252,988	-		CCNA_03102	0.42	-1.1
3,253,000	+		CCNA_03102	0.43	+2.6
3,253,000	+		CCNA_03102	0.43	+0.3
3,253,008	-		CCNA_03102	0.43	+0.8
3,253,024	+		CCNA_03102	0.44	+1.5
3,253,105	+		CCNA_03102	0.50	+0.4
3,253,108	-		CCNA_03102	0.50	-0.0
3,253,113	-		CCNA_03102	0.50	+1.8
3,253,142	-		CCNA_03102	0.52	+0.9
3,253,144	+		CCNA_03102	0.52	+2.3
3,253,168	-		CCNA_03102	0.54	+0.1
3,253,187	-		CCNA_03102	0.55	+1.2
3,253,189	-		CCNA_03102	0.55	-0.7
3,253,196	+		CCNA_03102	0.56	-0.5
3,253,214	+		CCNA_03102	0.57	+1.7
3,253,225	+		CCNA_03102	0.58	-1.9
3,253,246	-		CCNA_03102	0.59	-2.3
3,253,260	+		CCNA_03102	0.60	-0.2
3,253,260	+		CCNA_03102	0.60	+0.6
3,253,275	-		CCNA_03102	0.61	+1.2
3,253,320	+				+1.6
3,253,370	+		CCNA_03102	0.68	+0.2
3,253,375	+		CCNA_03102	0.68	-0.4
3,253,378	-		CCNA_03102	0.68	+1.2
3,253,378	-		CCNA_03102	0.68	+0.6
3,253,383	-		CCNA_03102	0.68	-0.1
3,253,409	-		CCNA_03102	0.70	+0.5
3,253,418	+		CCNA_03102	0.71	-1.3
3,253,426	-		CCNA_03102	0.71	+1.0
3,253,428	+		CCNA_03102	0.71	+0.1
3,253,428	+		CCNA_03102	0.71	-1.4
3,253,436	-		CCNA_03102	0.72	-1.2
3,253,436	-		CCNA_03102	0.72	-1.6
3,253,462	-		CCNA_03102	0.74	-3.1
3,253,484	+		CCNA_03102	0.75	+3.2
3,253,507	-		CCNA_03102	0.77	-0.8
3,253,579	+		CCNA_03102	0.82	-1.7
3,253,609	-		CCNA_03102	0.84	-0.5
3,253,664	+		CCNA_03102	0.87	+2.7
3,253,735	+				-0.4
3,253,736	+				-2.1
3,253,742	+				-0.5
3,253,744	-				+1.2
3,253,775	+				-0.6
3,253,800	-				+1.2
3,253,829	+				+0.5
3,253,831	-				-0.5
3,253,851	+				-0.6
3,253,854	-				+1.6
3,253,885	-				+1.6
3,253,896	+				-0.1
3,253,897	+				-1.1
3,253,897	+				+1.0
3,253,904	-				+0.5
3,253,907	+				-1.6
3,253,910	-				-0.8
3,253,914	+				+0.2
3,253,915	-				+1.0
3,253,956	-				-1.6
3,253,958	+				-4.0
3,253,967	-				-2.9
3,253,979	-				-3.0
3,254,039	+		CCNA_03103	0.18	-4.4
3,254,047	-		CCNA_03103	0.20	-1.8
3,254,059	+		CCNA_03103	0.22	-4.3
3,254,062	-		CCNA_03103	0.22	-1.0
3,254,062	-		CCNA_03103	0.22	-1.4
3,254,087	+		CCNA_03103	0.26	-0.7
3,254,122	+		CCNA_03103	0.32	-2.8
3,254,122	+		CCNA_03103	0.32	-2.4
3,254,170	+		CCNA_03103	0.40	-3.0
3,254,263	+		CCNA_03103	0.56	-3.2
3,254,271	-		CCNA_03103	0.57	-2.1
3,254,278	-		CCNA_03103	0.58	+0.0
3,254,278	-		CCNA_03103	0.58	-2.0
3,254,314	+		CCNA_03103	0.64	-2.0
3,254,333	+		CCNA_03103	0.67	-1.3
3,254,359	+		CCNA_03103	0.71	-1.7
3,254,367	+		CCNA_03103	0.73	-3.6
3,254,372	+		CCNA_03103	0.74	-2.1
3,254,391	+		CCNA_03103	0.77	-3.1
3,254,407	-		CCNA_03103	0.79	-1.4
3,254,450	+		CCNA_03103	0.87	-4.2
3,254,457	-		CCNA_03103	0.88	-1.1
3,254,489	+				-5.1
3,254,513	+				-2.1
3,254,520	-				-1.6
3,254,524	+				+0.1
3,254,524	+				-0.7
3,254,524	+				-1.7
3,254,524	+				+0.6
3,254,524	+				-1.1
3,254,524	+				-0.7
3,254,532	-				-0.7
3,254,532	-				+0.4
3,254,532	-				-1.0
3,254,532	-				+1.7
3,254,532	-				-1.8
3,254,532	-				-0.1
3,254,534	-				-0.5
3,254,542	+				-0.7
3,254,542	+				-2.3
3,254,542	+				+2.3
3,254,542	+				-3.3
3,254,603	-				-1.8
3,254,608	-				-2.2
3,254,636	+				-1.1
3,254,639	-				-3.9
3,254,641	+				-1.7
3,254,688	-		CCNA_03104	0.13	-1.8
3,254,770	+		CCNA_03104	0.21	-3.7
3,254,778	-		CCNA_03104	0.21	-1.0
3,254,778	-		CCNA_03104	0.21	-0.2