Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01763

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01762 and CCNA_01763 are separated by 227 nucleotidesCCNA_01763 and CCNA_01764 are separated by 120 nucleotidesCCNA_01764 and CCNA_01765 overlap by 4 nucleotidesCCNA_01765 and CCNA_01766 are separated by 42 nucleotides CCNA_01762: CCNA_01762 - YjgP/YjgQ family membrane permease, at 1,890,632 to 1,891,771 _01762 CCNA_01763: CCNA_01763 - multifunctional aminopeptidase, at 1,891,999 to 1,893,480 _01763 CCNA_01764: CCNA_01764 - DNA polymerase III, chi subunit, at 1,893,601 to 1,894,062 _01764 CCNA_01765: CCNA_01765 - peptidase inhibitor, I78 family, at 1,894,059 to 1,894,400 _01765 CCNA_01766: CCNA_01766 - CsgG-related curli protein, at 1,894,443 to 1,895,228 _01766 Position (kb) 1891 1892 1893 1894Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1891.868 kb on - strandat 1891.874 kb on - strandat 1891.887 kb on + strandat 1891.909 kb on - strandat 1891.914 kb on + strandat 1891.919 kb on + strandat 1891.927 kb on - strandat 1891.937 kb on - strandat 1891.967 kb on + strandat 1892.068 kb on - strandat 1892.122 kb on + strandat 1892.151 kb on + strand, within CCNA_01763at 1892.165 kb on + strand, within CCNA_01763at 1892.174 kb on - strand, within CCNA_01763at 1892.212 kb on + strand, within CCNA_01763at 1892.218 kb on + strand, within CCNA_01763at 1892.226 kb on - strand, within CCNA_01763at 1892.228 kb on + strand, within CCNA_01763at 1892.236 kb on - strand, within CCNA_01763at 1892.255 kb on - strand, within CCNA_01763at 1892.261 kb on - strand, within CCNA_01763at 1892.303 kb on + strand, within CCNA_01763at 1892.303 kb on + strandat 1892.366 kb on + strand, within CCNA_01763at 1892.472 kb on + strand, within CCNA_01763at 1892.480 kb on - strand, within CCNA_01763at 1892.506 kb on + strand, within CCNA_01763at 1892.531 kb on + strand, within CCNA_01763at 1892.551 kb on - strand, within CCNA_01763at 1892.596 kb on + strand, within CCNA_01763at 1892.597 kb on - strand, within CCNA_01763at 1892.645 kb on + strand, within CCNA_01763at 1892.655 kb on + strand, within CCNA_01763at 1892.655 kb on + strand, within CCNA_01763at 1892.661 kb on + strand, within CCNA_01763at 1892.680 kb on + strand, within CCNA_01763at 1892.680 kb on + strand, within CCNA_01763at 1892.713 kb on + strand, within CCNA_01763at 1892.749 kb on - strand, within CCNA_01763at 1892.781 kb on + strand, within CCNA_01763at 1892.781 kb on - strand, within CCNA_01763at 1892.819 kb on - strand, within CCNA_01763at 1892.827 kb on - strand, within CCNA_01763at 1892.894 kb on + strand, within CCNA_01763at 1892.901 kb on + strand, within CCNA_01763at 1892.903 kb on - strand, within CCNA_01763at 1892.904 kb on - strand, within CCNA_01763at 1892.909 kb on - strand, within CCNA_01763at 1892.959 kb on + strand, within CCNA_01763at 1892.978 kb on + strand, within CCNA_01763at 1893.029 kb on + strand, within CCNA_01763at 1893.086 kb on + strand, within CCNA_01763at 1893.089 kb on - strand, within CCNA_01763at 1893.089 kb on - strand, within CCNA_01763at 1893.108 kb on - strand, within CCNA_01763at 1893.117 kb on - strand, within CCNA_01763at 1893.211 kb on + strand, within CCNA_01763at 1893.325 kb on + strand, within CCNA_01763at 1893.366 kb on - strandat 1893.426 kb on + strandat 1893.426 kb on + strandat 1893.426 kb on + strandat 1893.434 kb on - strandat 1893.436 kb on - strandat 1893.479 kb on + strandat 1893.487 kb on - strandat 1893.530 kb on - strandat 1893.540 kb on - strandat 1893.556 kb on + strandat 1893.575 kb on - strandat 1893.575 kb on - strandat 1893.620 kb on - strandat 1894.056 kb on + strandat 1894.056 kb on + strandat 1894.103 kb on - strand, within CCNA_01765at 1894.112 kb on - strand, within CCNA_01765at 1894.199 kb on - strand, within CCNA_01765at 1894.241 kb on - strand, within CCNA_01765at 1894.250 kb on + strand, within CCNA_01765at 1894.255 kb on + strand, within CCNA_01765at 1894.282 kb on - strand, within CCNA_01765at 1894.321 kb on + strand, within CCNA_01765at 1894.343 kb on + strand, within CCNA_01765at 1894.363 kb on - strand, within CCNA_01765at 1894.374 kb on - strandat 1894.385 kb on + strandat 1894.393 kb on - strandat 1894.464 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,891,868 - -0.9
1,891,874 - -2.0
1,891,887 + -2.2
1,891,909 - -1.6
1,891,914 + -0.6
1,891,919 + +0.0
1,891,927 - -0.7
1,891,937 - -0.3
1,891,967 + -0.4
1,892,068 - -0.4
1,892,122 + -2.0
1,892,151 + CCNA_01763 0.10 -2.8
1,892,165 + CCNA_01763 0.11 +1.1
1,892,174 - CCNA_01763 0.12 -2.1
1,892,212 + CCNA_01763 0.14 -2.8
1,892,218 + CCNA_01763 0.15 -3.7
1,892,226 - CCNA_01763 0.15 -1.9
1,892,228 + CCNA_01763 0.15 -2.3
1,892,236 - CCNA_01763 0.16 -1.4
1,892,255 - CCNA_01763 0.17 -2.3
1,892,261 - CCNA_01763 0.18 -0.4
1,892,303 + CCNA_01763 0.21 -0.3
1,892,303 + +0.4
1,892,366 + CCNA_01763 0.25 -3.1
1,892,472 + CCNA_01763 0.32 -3.6
1,892,480 - CCNA_01763 0.32 -1.1
1,892,506 + CCNA_01763 0.34 -1.2
1,892,531 + CCNA_01763 0.36 -1.7
1,892,551 - CCNA_01763 0.37 -1.1
1,892,596 + CCNA_01763 0.40 -0.6
1,892,597 - CCNA_01763 0.40 -2.3
1,892,645 + CCNA_01763 0.44 -0.6
1,892,655 + CCNA_01763 0.44 -2.9
1,892,655 + CCNA_01763 0.44 -2.6
1,892,661 + CCNA_01763 0.45 -3.3
1,892,680 + CCNA_01763 0.46 -2.7
1,892,680 + CCNA_01763 0.46 -3.2
1,892,713 + CCNA_01763 0.48 -4.1
1,892,749 - CCNA_01763 0.51 -0.1
1,892,781 + CCNA_01763 0.53 -3.7
1,892,781 - CCNA_01763 0.53 -1.5
1,892,819 - CCNA_01763 0.55 -1.2
1,892,827 - CCNA_01763 0.56 -1.7
1,892,894 + CCNA_01763 0.60 -1.5
1,892,901 + CCNA_01763 0.61 -2.3
1,892,903 - CCNA_01763 0.61 -2.4
1,892,904 - CCNA_01763 0.61 -2.2
1,892,909 - CCNA_01763 0.61 -0.4
1,892,959 + CCNA_01763 0.65 +0.1
1,892,978 + CCNA_01763 0.66 -0.3
1,893,029 + CCNA_01763 0.70 -4.1
1,893,086 + CCNA_01763 0.73 -4.3
1,893,089 - CCNA_01763 0.74 +0.8
1,893,089 - CCNA_01763 0.74 -1.4
1,893,108 - CCNA_01763 0.75 -2.6
1,893,117 - CCNA_01763 0.75 -2.4
1,893,211 + CCNA_01763 0.82 -3.3
1,893,325 + CCNA_01763 0.89 -2.9
1,893,366 - -1.0
1,893,426 + -3.5
1,893,426 + -2.1
1,893,426 + -3.6
1,893,434 - -1.9
1,893,436 - -2.4
1,893,479 + -0.9
1,893,487 - -0.6
1,893,530 - +1.3
1,893,540 - +1.3
1,893,556 + -1.2
1,893,575 - +1.7
1,893,575 - -1.9
1,893,620 - +1.7
1,894,056 + +1.9
1,894,056 + -1.7
1,894,103 - CCNA_01765 0.13 -2.9
1,894,112 - CCNA_01765 0.15 +0.9
1,894,199 - CCNA_01765 0.41 -1.6
1,894,241 - CCNA_01765 0.53 -0.4
1,894,250 + CCNA_01765 0.56 +0.7
1,894,255 + CCNA_01765 0.57 -1.7
1,894,282 - CCNA_01765 0.65 +1.3
1,894,321 + CCNA_01765 0.77 +0.4
1,894,343 + CCNA_01765 0.83 +1.1
1,894,363 - CCNA_01765 0.89 +0.1
1,894,374 - +0.7
1,894,385 + +1.6
1,894,393 - +0.5
1,894,464 + -0.6

Or see this region's nucleotide sequence