Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00721

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00720 and CCNA_00721 are separated by 165 nucleotidesCCNA_00721 and CCNA_00722 are separated by 57 nucleotidesCCNA_00722 and CCNA_00723 are separated by 174 nucleotidesCCNA_00723 and CCNA_00724 are separated by 18 nucleotides CCNA_00720: CCNA_00720 - type I protein secretion ATP-binding protein/type I protein secretion transmembrane subunit/type I secretion processing peptidase, at 775,596 to 777,776 _00720 CCNA_00721: CCNA_00721 - chaperonin GroEL, at 777,942 to 779,585 _00721 CCNA_00722: CCNA_00722 - chaperonin GroES, at 779,643 to 779,933 _00722 CCNA_00723: CCNA_00723 - glyoxalase family protein, at 780,108 to 780,302 _00723 CCNA_00724: CCNA_00724 - hypothetical protein, at 780,321 to 780,749 _00724 Position (kb) 777 778 779 780Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 776.947 kb on - strand, within CCNA_00720at 776.987 kb on - strand, within CCNA_00720at 777.067 kb on + strand, within CCNA_00720at 777.067 kb on + strand, within CCNA_00720at 777.075 kb on - strand, within CCNA_00720at 777.076 kb on - strand, within CCNA_00720at 777.078 kb on + strand, within CCNA_00720at 777.120 kb on + strand, within CCNA_00720at 777.128 kb on - strand, within CCNA_00720at 777.140 kb on + strand, within CCNA_00720at 777.145 kb on + strand, within CCNA_00720at 777.145 kb on + strand, within CCNA_00720at 777.152 kb on - strand, within CCNA_00720at 777.153 kb on - strand, within CCNA_00720at 777.187 kb on - strand, within CCNA_00720at 777.229 kb on + strand, within CCNA_00720at 777.258 kb on - strand, within CCNA_00720at 777.293 kb on + strand, within CCNA_00720at 777.301 kb on - strand, within CCNA_00720at 777.317 kb on + strand, within CCNA_00720at 777.363 kb on - strand, within CCNA_00720at 777.408 kb on + strand, within CCNA_00720at 777.429 kb on + strand, within CCNA_00720at 777.434 kb on + strand, within CCNA_00720at 777.437 kb on - strand, within CCNA_00720at 777.470 kb on - strand, within CCNA_00720at 777.487 kb on - strand, within CCNA_00720at 777.493 kb on + strand, within CCNA_00720at 777.536 kb on - strand, within CCNA_00720at 777.619 kb on - strandat 777.690 kb on + strandat 777.713 kb on - strandat 777.713 kb on - strandat 777.730 kb on - strandat 777.768 kb on + strandat 777.823 kb on + strandat 777.831 kb on - strandat 777.837 kb on - strandat 777.866 kb on - strandat 777.886 kb on + strandat 777.901 kb on + strandat 777.909 kb on - strandat 777.917 kb on - strandat 777.935 kb on - strandat 777.948 kb on - strandat 779.665 kb on - strandat 779.990 kb on - strandat 780.040 kb on - strandat 780.075 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.090 kb on + strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.098 kb on - strandat 780.114 kb on + strandat 780.116 kb on + strandat 780.122 kb on - strandat 780.124 kb on - strandat 780.132 kb on - strand, within CCNA_00723at 780.141 kb on + strand, within CCNA_00723at 780.141 kb on + strand, within CCNA_00723at 780.202 kb on + strand, within CCNA_00723at 780.233 kb on + strand, within CCNA_00723at 780.233 kb on + strand, within CCNA_00723at 780.235 kb on + strand, within CCNA_00723at 780.241 kb on - strand, within CCNA_00723at 780.241 kb on - strand, within CCNA_00723at 780.241 kb on - strand, within CCNA_00723at 780.286 kb on + strandat 780.316 kb on - strandat 780.344 kb on + strandat 780.391 kb on - strand, within CCNA_00724at 780.416 kb on + strand, within CCNA_00724at 780.416 kb on + strand, within CCNA_00724at 780.416 kb on + strand, within CCNA_00724at 780.422 kb on - strand, within CCNA_00724at 780.424 kb on + strand, within CCNA_00724at 780.424 kb on - strand, within CCNA_00724at 780.424 kb on - strand, within CCNA_00724at 780.434 kb on + strand, within CCNA_00724at 780.434 kb on + strand, within CCNA_00724at 780.448 kb on + strand, within CCNA_00724at 780.456 kb on - strand, within CCNA_00724at 780.456 kb on - strand, within CCNA_00724at 780.456 kb on - strand, within CCNA_00724at 780.456 kb on - strand, within CCNA_00724at 780.485 kb on + strand, within CCNA_00724at 780.485 kb on + strand, within CCNA_00724at 780.519 kb on - strand, within CCNA_00724at 780.521 kb on + strand, within CCNA_00724at 780.530 kb on - strand, within CCNA_00724at 780.534 kb on - strand, within CCNA_00724at 780.555 kb on + strand, within CCNA_00724at 780.561 kb on + strand, within CCNA_00724at 780.561 kb on + strand, within CCNA_00724at 780.561 kb on + strand, within CCNA_00724at 780.561 kb on + strand, within CCNA_00724at 780.561 kb on + strand, within CCNA_00724at 780.562 kb on + strand, within CCNA_00724at 780.563 kb on - strand, within CCNA_00724at 780.569 kb on - strand, within CCNA_00724at 780.570 kb on - strand, within CCNA_00724at 780.570 kb on - strand, within CCNA_00724at 780.575 kb on - strand, within CCNA_00724at 780.583 kb on + strand, within CCNA_00724

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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776,947 - CCNA_00720 0.62 -0.3
776,987 - CCNA_00720 0.64 -0.9
777,067 + CCNA_00720 0.67 -2.5
777,067 + CCNA_00720 0.67 -2.3
777,075 - CCNA_00720 0.68 -0.7
777,076 - CCNA_00720 0.68 +0.0
777,078 + CCNA_00720 0.68 +0.9
777,120 + CCNA_00720 0.70 -2.3
777,128 - CCNA_00720 0.70 +2.2
777,140 + CCNA_00720 0.71 +0.7
777,145 + CCNA_00720 0.71 +1.9
777,145 + CCNA_00720 0.71 -1.0
777,152 - CCNA_00720 0.71 -2.5
777,153 - CCNA_00720 0.71 -2.1
777,187 - CCNA_00720 0.73 -1.3
777,229 + CCNA_00720 0.75 -0.9
777,258 - CCNA_00720 0.76 -0.9
777,293 + CCNA_00720 0.78 -0.3
777,301 - CCNA_00720 0.78 -1.1
777,317 + CCNA_00720 0.79 +0.8
777,363 - CCNA_00720 0.81 +0.3
777,408 + CCNA_00720 0.83 -1.4
777,429 + CCNA_00720 0.84 -0.1
777,434 + CCNA_00720 0.84 -0.8
777,437 - CCNA_00720 0.84 -1.4
777,470 - CCNA_00720 0.86 -0.3
777,487 - CCNA_00720 0.87 -0.9
777,493 + CCNA_00720 0.87 +1.4
777,536 - CCNA_00720 0.89 -1.2
777,619 - -1.4
777,690 + +0.5
777,713 - -0.3
777,713 - -2.8
777,730 - -1.5
777,768 + -0.3
777,823 + -1.0
777,831 - -1.9
777,837 - -0.1
777,866 - -2.4
777,886 + -2.3
777,901 + +0.3
777,909 - -0.9
777,917 - -0.8
777,935 - -0.9
777,948 - -1.0
779,665 - -1.0
779,990 - +0.7
780,040 - -0.6
780,075 + -2.0
780,090 + +1.5
780,090 + -1.4
780,090 + -2.5
780,090 + -0.5
780,090 + -4.0
780,090 + -1.0
780,090 + +0.4
780,098 - -0.6
780,098 - -0.2
780,098 - +0.9
780,098 - -2.1
780,098 - +0.8
780,098 - +1.6
780,098 - +2.8
780,098 - +0.4
780,098 - +2.0
780,098 - +1.9
780,098 - -2.2
780,098 - +1.2
780,114 + -2.5
780,116 + -1.2
780,122 - -2.3
780,124 - +0.2
780,132 - CCNA_00723 0.12 +0.9
780,141 + CCNA_00723 0.17 +1.1
780,141 + CCNA_00723 0.17 -2.1
780,202 + CCNA_00723 0.48 +1.1
780,233 + CCNA_00723 0.64 -0.1
780,233 + CCNA_00723 0.64 -1.9
780,235 + CCNA_00723 0.65 -1.0
780,241 - CCNA_00723 0.68 -1.6
780,241 - CCNA_00723 0.68 +0.0
780,241 - CCNA_00723 0.68 +2.7
780,286 + +0.4
780,316 - +0.2
780,344 + +0.1
780,391 - CCNA_00724 0.16 -2.5
780,416 + CCNA_00724 0.22 +2.0
780,416 + CCNA_00724 0.22 +1.3
780,416 + CCNA_00724 0.22 -1.0
780,422 - CCNA_00724 0.24 -1.3
780,424 + CCNA_00724 0.24 +0.8
780,424 - CCNA_00724 0.24 -1.3
780,424 - CCNA_00724 0.24 +3.1
780,434 + CCNA_00724 0.26 -2.5
780,434 + CCNA_00724 0.26 -2.7
780,448 + CCNA_00724 0.30 +2.5
780,456 - CCNA_00724 0.31 +1.1
780,456 - CCNA_00724 0.31 -1.0
780,456 - CCNA_00724 0.31 -1.1
780,456 - CCNA_00724 0.31 +0.0
780,485 + CCNA_00724 0.38 +0.4
780,485 + CCNA_00724 0.38 +1.1
780,519 - CCNA_00724 0.46 -0.9
780,521 + CCNA_00724 0.47 +1.6
780,530 - CCNA_00724 0.49 -1.7
780,534 - CCNA_00724 0.50 -0.4
780,555 + CCNA_00724 0.55 +0.9
780,561 + CCNA_00724 0.56 -0.5
780,561 + CCNA_00724 0.56 +0.9
780,561 + CCNA_00724 0.56 +0.4
780,561 + CCNA_00724 0.56 +0.1
780,561 + CCNA_00724 0.56 +0.6
780,562 + CCNA_00724 0.56 +0.6
780,563 - CCNA_00724 0.56 +0.4
780,569 - CCNA_00724 0.58 +0.0
780,570 - CCNA_00724 0.58 +1.9
780,570 - CCNA_00724 0.58 -2.4
780,575 - CCNA_00724 0.59 +0.1
780,583 + CCNA_00724 0.61 +0.4

Or see this region's nucleotide sequence