Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00199

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00197 and CCNA_00198 overlap by 4 nucleotidesCCNA_00198 and CCNA_00199 are separated by 130 nucleotidesCCNA_00199 and CCNA_00200 are separated by 52 nucleotides CCNA_00197: CCNA_00197 - LSU ribosomal protein L19P, at 211,121 to 211,522 _00197 CCNA_00198: CCNA_00198 - tRNA (guanine-N1) -methyltransferase, at 211,519 to 212,256 _00198 CCNA_00199: CCNA_00199 - TadG/vWA-family protein, at 212,387 to 214,267 _00199 CCNA_00200: CCNA_00200 - 2OG-Fe(II) oxygenase superfamily protein, at 214,320 to 215,255 _00200 Position (kb) 212 213 214 215Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 211.549 kb on - strandat 211.561 kb on - strandat 211.561 kb on - strandat 211.561 kb on - strandat 211.561 kb on - strandat 211.561 kb on - strandat 212.251 kb on - strandat 212.259 kb on - strandat 212.280 kb on + strandat 212.287 kb on + strandat 212.287 kb on + strandat 212.287 kb on + strandat 212.288 kb on - strandat 212.288 kb on - strandat 212.301 kb on - strandat 212.311 kb on - strandat 212.318 kb on - strandat 212.330 kb on - strandat 212.380 kb on - strandat 212.382 kb on + strandat 212.393 kb on + strandat 212.447 kb on + strandat 212.457 kb on - strandat 212.492 kb on - strandat 212.507 kb on - strandat 212.513 kb on + strandat 212.529 kb on + strandat 212.542 kb on - strandat 212.558 kb on - strandat 212.566 kb on + strandat 212.608 kb on + strand, within CCNA_00199at 212.620 kb on + strand, within CCNA_00199at 212.623 kb on - strand, within CCNA_00199at 212.633 kb on - strand, within CCNA_00199at 212.638 kb on - strand, within CCNA_00199at 212.675 kb on + strand, within CCNA_00199at 212.675 kb on + strand, within CCNA_00199at 212.682 kb on + strand, within CCNA_00199at 212.695 kb on + strand, within CCNA_00199at 212.766 kb on - strand, within CCNA_00199at 212.778 kb on + strand, within CCNA_00199at 212.832 kb on + strand, within CCNA_00199at 212.881 kb on + strand, within CCNA_00199at 212.881 kb on + strand, within CCNA_00199at 212.889 kb on - strand, within CCNA_00199at 212.913 kb on - strand, within CCNA_00199at 212.949 kb on - strand, within CCNA_00199at 212.954 kb on - strand, within CCNA_00199at 212.954 kb on - strand, within CCNA_00199at 212.984 kb on + strand, within CCNA_00199at 212.986 kb on + strand, within CCNA_00199at 212.994 kb on - strand, within CCNA_00199at 212.999 kb on - strand, within CCNA_00199at 213.016 kb on + strand, within CCNA_00199at 213.025 kb on - strand, within CCNA_00199at 213.034 kb on + strand, within CCNA_00199at 213.049 kb on + strand, within CCNA_00199at 213.049 kb on + strand, within CCNA_00199at 213.057 kb on - strand, within CCNA_00199at 213.057 kb on - strand, within CCNA_00199at 213.077 kb on + strand, within CCNA_00199at 213.086 kb on - strand, within CCNA_00199at 213.104 kb on + strand, within CCNA_00199at 213.109 kb on + strand, within CCNA_00199at 213.136 kb on - strand, within CCNA_00199at 213.144 kb on + strand, within CCNA_00199at 213.144 kb on + strand, within CCNA_00199at 213.152 kb on - strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.162 kb on - strand, within CCNA_00199at 213.162 kb on - strand, within CCNA_00199at 213.162 kb on - strand, within CCNA_00199at 213.162 kb on - strand, within CCNA_00199at 213.164 kb on - strand, within CCNA_00199at 213.169 kb on - strand, within CCNA_00199at 213.183 kb on - strand, within CCNA_00199at 213.191 kb on + strand, within CCNA_00199at 213.214 kb on + strand, within CCNA_00199at 213.214 kb on + strand, within CCNA_00199at 213.226 kb on + strand, within CCNA_00199at 213.231 kb on + strand, within CCNA_00199at 213.261 kb on + strand, within CCNA_00199at 213.264 kb on - strand, within CCNA_00199at 213.268 kb on + strand, within CCNA_00199at 213.278 kb on + strand, within CCNA_00199at 213.305 kb on + strand, within CCNA_00199at 213.377 kb on + strand, within CCNA_00199at 213.399 kb on + strand, within CCNA_00199at 213.404 kb on + strand, within CCNA_00199at 213.404 kb on + strand, within CCNA_00199at 213.404 kb on + strand, within CCNA_00199at 213.407 kb on - strand, within CCNA_00199at 213.407 kb on - strand, within CCNA_00199at 213.435 kb on - strand, within CCNA_00199at 213.438 kb on + strand, within CCNA_00199at 213.441 kb on - strand, within CCNA_00199at 213.441 kb on - strand, within CCNA_00199at 213.474 kb on + strand, within CCNA_00199at 213.479 kb on + strand, within CCNA_00199at 213.489 kb on + strand, within CCNA_00199at 213.494 kb on + strand, within CCNA_00199at 213.494 kb on + strand, within CCNA_00199at 213.494 kb on + strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.527 kb on + strand, within CCNA_00199at 213.527 kb on - strand, within CCNA_00199at 213.536 kb on + strand, within CCNA_00199at 213.544 kb on - strand, within CCNA_00199at 213.556 kb on + strand, within CCNA_00199at 213.559 kb on + strand, within CCNA_00199at 213.565 kb on - strand, within CCNA_00199at 213.569 kb on - strand, within CCNA_00199at 213.586 kb on + strand, within CCNA_00199at 213.611 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.632 kb on + strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.663 kb on + strand, within CCNA_00199at 213.684 kb on - strand, within CCNA_00199at 213.689 kb on + strand, within CCNA_00199at 213.697 kb on - strand, within CCNA_00199at 213.699 kb on + strand, within CCNA_00199at 213.711 kb on + strand, within CCNA_00199at 213.733 kb on + strand, within CCNA_00199at 213.733 kb on + strand, within CCNA_00199at 213.741 kb on - strand, within CCNA_00199at 213.741 kb on - strand, within CCNA_00199at 213.741 kb on - strand, within CCNA_00199at 213.742 kb on + strand, within CCNA_00199at 213.761 kb on + strand, within CCNA_00199at 213.766 kb on + strand, within CCNA_00199at 213.774 kb on - strand, within CCNA_00199at 213.808 kb on - strand, within CCNA_00199at 213.815 kb on + strand, within CCNA_00199at 213.823 kb on - strand, within CCNA_00199at 213.826 kb on + strand, within CCNA_00199at 213.826 kb on + strand, within CCNA_00199at 213.867 kb on - strand, within CCNA_00199at 213.894 kb on + strand, within CCNA_00199at 213.919 kb on - strand, within CCNA_00199at 213.940 kb on + strand, within CCNA_00199at 213.968 kb on + strand, within CCNA_00199at 213.994 kb on + strand, within CCNA_00199at 214.020 kb on - strandat 214.028 kb on + strand, within CCNA_00199at 214.036 kb on - strand, within CCNA_00199at 214.049 kb on - strand, within CCNA_00199at 214.058 kb on + strand, within CCNA_00199at 214.066 kb on - strand, within CCNA_00199at 214.071 kb on + strand, within CCNA_00199at 214.090 kb on + strandat 214.092 kb on + strandat 214.099 kb on + strandat 214.107 kb on - strandat 214.108 kb on - strandat 214.129 kb on - strandat 214.137 kb on - strandat 214.183 kb on - strandat 214.227 kb on + strandat 214.228 kb on - strandat 214.228 kb on - strandat 214.230 kb on + strandat 214.232 kb on + strandat 214.242 kb on + strandat 214.250 kb on - strandat 214.291 kb on + strandat 214.293 kb on - strandat 214.299 kb on - strandat 214.326 kb on - strandat 214.381 kb on + strandat 214.387 kb on - strandat 214.413 kb on + strandat 214.413 kb on + strandat 214.413 kb on + strandat 214.413 kb on + strandat 214.413 kb on + strandat 214.421 kb on - strand, within CCNA_00200at 214.421 kb on - strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.463 kb on + strand, within CCNA_00200at 214.468 kb on + strand, within CCNA_00200at 214.471 kb on - strand, within CCNA_00200at 214.512 kb on + strand, within CCNA_00200at 214.515 kb on + strand, within CCNA_00200at 214.515 kb on + strand, within CCNA_00200at 214.523 kb on - strand, within CCNA_00200at 214.523 kb on - strand, within CCNA_00200at 214.527 kb on + strand, within CCNA_00200at 214.528 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.530 kb on - strand, within CCNA_00200at 214.559 kb on - strand, within CCNA_00200at 214.616 kb on - strand, within CCNA_00200at 214.623 kb on + strand, within CCNA_00200at 214.626 kb on - strand, within CCNA_00200at 214.639 kb on - strand, within CCNA_00200at 214.641 kb on + strand, within CCNA_00200at 214.646 kb on + strand, within CCNA_00200at 214.672 kb on + strand, within CCNA_00200at 214.672 kb on + strand, within CCNA_00200at 214.680 kb on - strand, within CCNA_00200at 214.734 kb on + strand, within CCNA_00200at 214.748 kb on + strand, within CCNA_00200at 214.751 kb on - strand, within CCNA_00200at 214.796 kb on + strand, within CCNA_00200at 214.802 kb on + strand, within CCNA_00200at 214.804 kb on - strand, within CCNA_00200at 214.824 kb on - strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.859 kb on - strand, within CCNA_00200at 214.859 kb on - strand, within CCNA_00200at 214.869 kb on - strand, within CCNA_00200at 214.905 kb on - strand, within CCNA_00200at 214.963 kb on - strand, within CCNA_00200at 214.988 kb on - strand, within CCNA_00200at 215.018 kb on + strand, within CCNA_00200at 215.020 kb on + strand, within CCNA_00200at 215.037 kb on + strand, within CCNA_00200at 215.046 kb on - strand, within CCNA_00200at 215.055 kb on + strand, within CCNA_00200at 215.065 kb on + strand, within CCNA_00200at 215.100 kb on + strandat 215.100 kb on + strand, within CCNA_00200at 215.165 kb on - strandat 215.172 kb on - strandat 215.194 kb on - strandat 215.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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211,549 - -1.0
211,561 - -1.7
211,561 - +0.8
211,561 - -2.6
211,561 - -1.7
211,561 - -0.1
212,251 - -1.6
212,259 - -0.4
212,280 + +0.8
212,287 + -1.0
212,287 + -2.4
212,287 + +2.4
212,288 - +1.3
212,288 - -1.6
212,301 - -1.0
212,311 - -1.3
212,318 - +0.0
212,330 - +1.5
212,380 - -1.0
212,382 + -0.4
212,393 + -0.9
212,447 + -0.5
212,457 - -1.2
212,492 - -1.5
212,507 - -1.5
212,513 + -0.3
212,529 + -1.9
212,542 - -0.2
212,558 - -0.1
212,566 + +0.2
212,608 + CCNA_00199 0.12 +1.6
212,620 + CCNA_00199 0.12 -2.4
212,623 - CCNA_00199 0.13 +0.2
212,633 - CCNA_00199 0.13 -1.1
212,638 - CCNA_00199 0.13 +1.9
212,675 + CCNA_00199 0.15 -0.4
212,675 + CCNA_00199 0.15 -1.2
212,682 + CCNA_00199 0.16 +0.6
212,695 + CCNA_00199 0.16 -3.4
212,766 - CCNA_00199 0.20 +1.5
212,778 + CCNA_00199 0.21 -1.6
212,832 + CCNA_00199 0.24 +0.6
212,881 + CCNA_00199 0.26 +0.9
212,881 + CCNA_00199 0.26 +2.2
212,889 - CCNA_00199 0.27 -3.4
212,913 - CCNA_00199 0.28 +0.5
212,949 - CCNA_00199 0.30 +0.8
212,954 - CCNA_00199 0.30 -0.6
212,954 - CCNA_00199 0.30 +1.0
212,984 + CCNA_00199 0.32 +0.6
212,986 + CCNA_00199 0.32 +0.0
212,994 - CCNA_00199 0.32 -0.6
212,999 - CCNA_00199 0.33 +0.1
213,016 + CCNA_00199 0.33 -0.3
213,025 - CCNA_00199 0.34 -1.6
213,034 + CCNA_00199 0.34 +1.2
213,049 + CCNA_00199 0.35 -1.9
213,049 + CCNA_00199 0.35 +1.5
213,057 - CCNA_00199 0.36 +1.6
213,057 - CCNA_00199 0.36 +1.4
213,077 + CCNA_00199 0.37 +1.2
213,086 - CCNA_00199 0.37 +0.5
213,104 + CCNA_00199 0.38 +2.3
213,109 + CCNA_00199 0.38 -0.7
213,136 - CCNA_00199 0.40 -0.6
213,144 + CCNA_00199 0.40 +0.3
213,144 + CCNA_00199 0.40 +1.2
213,152 - CCNA_00199 0.41 -3.3
213,154 + CCNA_00199 0.41 +0.9
213,162 - CCNA_00199 0.41 +3.0
213,162 - CCNA_00199 0.41 +1.1
213,162 - CCNA_00199 0.41 +0.6
213,162 - CCNA_00199 0.41 +2.2
213,164 - CCNA_00199 0.41 +0.8
213,169 - CCNA_00199 0.42 -0.4
213,183 - CCNA_00199 0.42 +2.7
213,191 + CCNA_00199 0.43 +0.5
213,214 + CCNA_00199 0.44 +0.7
213,214 + CCNA_00199 0.44 -0.3
213,226 + CCNA_00199 0.45 +0.9
213,231 + CCNA_00199 0.45 +3.0
213,261 + CCNA_00199 0.46 -0.6
213,264 - CCNA_00199 0.47 -1.1
213,268 + CCNA_00199 0.47 -1.1
213,278 + CCNA_00199 0.47 -2.3
213,305 + CCNA_00199 0.49 +1.3
213,377 + CCNA_00199 0.53 -1.2
213,399 + CCNA_00199 0.54 +1.4
213,404 + CCNA_00199 0.54 -0.3
213,404 + CCNA_00199 0.54 +0.1
213,404 + CCNA_00199 0.54 +0.5
213,407 - CCNA_00199 0.54 -1.2
213,407 - CCNA_00199 0.54 +0.2
213,435 - CCNA_00199 0.56 +2.2
213,438 + CCNA_00199 0.56 -2.0
213,441 - CCNA_00199 0.56 -1.1
213,441 - CCNA_00199 0.56 -2.1
213,474 + CCNA_00199 0.58 +0.8
213,479 + CCNA_00199 0.58 +2.5
213,489 + CCNA_00199 0.59 +0.3
213,494 + CCNA_00199 0.59 -0.1
213,494 + CCNA_00199 0.59 -1.0
213,494 + CCNA_00199 0.59 +0.6
213,502 - CCNA_00199 0.59 -2.6
213,502 - CCNA_00199 0.59 -0.9
213,502 - CCNA_00199 0.59 +1.0
213,527 + CCNA_00199 0.61 +0.1
213,527 - CCNA_00199 0.61 +0.9
213,536 + CCNA_00199 0.61 +0.6
213,544 - CCNA_00199 0.62 -0.3
213,556 + CCNA_00199 0.62 +0.8
213,559 + CCNA_00199 0.62 -0.9
213,565 - CCNA_00199 0.63 +1.0
213,569 - CCNA_00199 0.63 -3.2
213,586 + CCNA_00199 0.64 +0.2
213,611 + CCNA_00199 0.65 +0.2
213,631 + CCNA_00199 0.66 +0.7
213,631 + CCNA_00199 0.66 +0.3
213,631 + CCNA_00199 0.66 +2.0
213,631 + CCNA_00199 0.66 -1.3
213,631 + CCNA_00199 0.66 +2.7
213,632 + CCNA_00199 0.66 +2.7
213,639 - CCNA_00199 0.67 +0.4
213,639 - CCNA_00199 0.67 -0.6
213,663 + CCNA_00199 0.68 -0.6
213,684 - CCNA_00199 0.69 +1.6
213,689 + CCNA_00199 0.69 +1.8
213,697 - CCNA_00199 0.70 -0.2
213,699 + CCNA_00199 0.70 -0.7
213,711 + CCNA_00199 0.70 +0.2
213,733 + CCNA_00199 0.72 -0.1
213,733 + CCNA_00199 0.72 +0.7
213,741 - CCNA_00199 0.72 -0.5
213,741 - CCNA_00199 0.72 +2.3
213,741 - CCNA_00199 0.72 +1.3
213,742 + CCNA_00199 0.72 -2.0
213,761 + CCNA_00199 0.73 +0.4
213,766 + CCNA_00199 0.73 -2.4
213,774 - CCNA_00199 0.74 -2.2
213,808 - CCNA_00199 0.76 -1.0
213,815 + CCNA_00199 0.76 -2.0
213,823 - CCNA_00199 0.76 +1.3
213,826 + CCNA_00199 0.77 +1.2
213,826 + CCNA_00199 0.77 +0.0
213,867 - CCNA_00199 0.79 -0.1
213,894 + CCNA_00199 0.80 +0.5
213,919 - CCNA_00199 0.81 +1.5
213,940 + CCNA_00199 0.83 -2.6
213,968 + CCNA_00199 0.84 -0.7
213,994 + CCNA_00199 0.85 +2.1
214,020 - +3.2
214,028 + CCNA_00199 0.87 +2.2
214,036 - CCNA_00199 0.88 -0.4
214,049 - CCNA_00199 0.88 +1.2
214,058 + CCNA_00199 0.89 +0.4
214,066 - CCNA_00199 0.89 +2.6
214,071 + CCNA_00199 0.90 +0.7
214,090 + +1.0
214,092 + -0.4
214,099 + +0.8
214,107 - -1.9
214,108 - -2.7
214,129 - -2.0
214,137 - +1.0
214,183 - +2.1
214,227 + +0.8
214,228 - -1.6
214,228 - +3.3
214,230 + -0.3
214,232 + +1.6
214,242 + -1.8
214,250 - +2.0
214,291 + -0.5
214,293 - +0.0
214,299 - +2.6
214,326 - +0.5
214,381 + -1.5
214,387 - -0.1
214,413 + -1.5
214,413 + +0.5
214,413 + +1.6
214,413 + -1.9
214,413 + -0.9
214,421 - CCNA_00200 0.11 +1.0
214,421 - CCNA_00200 0.11 -1.7
214,423 + CCNA_00200 0.11 -0.2
214,463 + CCNA_00200 0.15 +1.4
214,468 + CCNA_00200 0.16 +1.0
214,471 - CCNA_00200 0.16 -0.7
214,512 + CCNA_00200 0.21 -1.4
214,515 + CCNA_00200 0.21 +1.8
214,515 + CCNA_00200 0.21 +0.8
214,523 - CCNA_00200 0.22 +0.0
214,523 - CCNA_00200 0.22 -1.7
214,527 + CCNA_00200 0.22 +1.2
214,528 - CCNA_00200 0.22 -0.8
214,530 - CCNA_00200 0.22 -0.2
214,530 - CCNA_00200 0.22 -0.0
214,530 - CCNA_00200 0.22 +1.5
214,530 - CCNA_00200 0.22 +1.0
214,530 - CCNA_00200 0.22 +0.1
214,559 - CCNA_00200 0.26 -0.2
214,616 - CCNA_00200 0.32 -1.0
214,623 + CCNA_00200 0.32 +1.7
214,626 - CCNA_00200 0.33 +0.0
214,639 - CCNA_00200 0.34 -0.6
214,641 + CCNA_00200 0.34 -0.9
214,646 + CCNA_00200 0.35 +2.1
214,672 + CCNA_00200 0.38 -0.9
214,672 + CCNA_00200 0.38 -2.3
214,680 - CCNA_00200 0.38 +1.2
214,734 + CCNA_00200 0.44 +1.6
214,748 + CCNA_00200 0.46 -0.5
214,751 - CCNA_00200 0.46 -2.0
214,796 + CCNA_00200 0.51 -2.6
214,802 + CCNA_00200 0.51 +1.2
214,804 - CCNA_00200 0.52 -1.6
214,824 - CCNA_00200 0.54 -0.2
214,851 + CCNA_00200 0.57 -1.6
214,851 + CCNA_00200 0.57 +1.6
214,851 + CCNA_00200 0.57 -2.6
214,859 - CCNA_00200 0.58 +0.5
214,859 - CCNA_00200 0.58 +0.5
214,869 - CCNA_00200 0.59 -1.5
214,905 - CCNA_00200 0.62 +2.2
214,963 - CCNA_00200 0.69 -1.2
214,988 - CCNA_00200 0.71 +2.0
215,018 + CCNA_00200 0.75 -0.5
215,020 + CCNA_00200 0.75 +1.6
215,037 + CCNA_00200 0.77 -2.9
215,046 - CCNA_00200 0.78 -2.6
215,055 + CCNA_00200 0.79 +1.6
215,065 + CCNA_00200 0.80 +1.7
215,100 + +0.0
215,100 + CCNA_00200 0.83 +1.8
215,165 - +2.9
215,172 - -0.1
215,194 - -3.8
215,205 + -0.9

Or see this region's nucleotide sequence