Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4280

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4279 and Ac3H11_4280 overlap by 41 nucleotidesAc3H11_4280 and Ac3H11_4281 are separated by 75 nucleotidesAc3H11_4281 and Ac3H11_4282 are separated by 168 nucleotides Ac3H11_4279 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 55,764 to 56,918 _4279 Ac3H11_4280 - NAD(P)H dehydrogenase, quinone family, at 56,878 to 57,546 _4280 Ac3H11_4281 - Transcriptional regulator, MerR family, at 57,622 to 58,071 _4281 Ac3H11_4282 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 58,240 to 59,118 _4282 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 56.118 kb on - strand, within Ac3H11_4279at 56.211 kb on + strand, within Ac3H11_4279at 56.211 kb on + strand, within Ac3H11_4279at 56.211 kb on + strand, within Ac3H11_4279at 56.211 kb on + strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.212 kb on - strand, within Ac3H11_4279at 56.301 kb on + strand, within Ac3H11_4279at 56.301 kb on + strand, within Ac3H11_4279at 56.301 kb on + strand, within Ac3H11_4279at 56.302 kb on - strand, within Ac3H11_4279at 56.302 kb on - strand, within Ac3H11_4279at 56.325 kb on + strand, within Ac3H11_4279at 56.325 kb on + strand, within Ac3H11_4279at 56.325 kb on + strand, within Ac3H11_4279at 56.325 kb on + strand, within Ac3H11_4279at 56.326 kb on - strand, within Ac3H11_4279at 56.326 kb on - strand, within Ac3H11_4279at 56.326 kb on - strand, within Ac3H11_4279at 56.326 kb on - strand, within Ac3H11_4279at 56.326 kb on - strand, within Ac3H11_4279at 56.505 kb on + strand, within Ac3H11_4279at 56.544 kb on + strand, within Ac3H11_4279at 56.544 kb on + strand, within Ac3H11_4279at 56.544 kb on + strand, within Ac3H11_4279at 56.545 kb on - strand, within Ac3H11_4279at 56.586 kb on - strand, within Ac3H11_4279at 56.586 kb on - strand, within Ac3H11_4279at 56.586 kb on - strand, within Ac3H11_4279at 56.589 kb on + strand, within Ac3H11_4279at 56.589 kb on + strand, within Ac3H11_4279at 56.589 kb on + strand, within Ac3H11_4279at 56.590 kb on - strand, within Ac3H11_4279at 56.590 kb on - strand, within Ac3H11_4279at 56.808 kb on + strandat 56.808 kb on + strandat 56.808 kb on + strandat 56.809 kb on - strandat 56.809 kb on - strandat 56.809 kb on - strandat 56.809 kb on - strandat 56.809 kb on - strandat 56.809 kb on - strandat 57.140 kb on + strand, within Ac3H11_4280at 57.141 kb on - strand, within Ac3H11_4280at 57.224 kb on + strand, within Ac3H11_4280at 57.224 kb on + strand, within Ac3H11_4280at 57.224 kb on + strand, within Ac3H11_4280at 57.225 kb on - strand, within Ac3H11_4280at 57.305 kb on + strand, within Ac3H11_4280at 57.306 kb on - strand, within Ac3H11_4280at 57.386 kb on + strand, within Ac3H11_4280at 57.471 kb on - strand, within Ac3H11_4280at 57.959 kb on + strand, within Ac3H11_4281at 57.960 kb on - strand, within Ac3H11_4281at 57.960 kb on - strand, within Ac3H11_4281at 57.968 kb on + strand, within Ac3H11_4281at 58.013 kb on + strand, within Ac3H11_4281at 58.014 kb on - strand, within Ac3H11_4281at 58.113 kb on + strandat 58.116 kb on - strandat 58.122 kb on - strandat 58.131 kb on + strandat 58.205 kb on + strandat 58.205 kb on + strandat 58.226 kb on + strandat 58.226 kb on + strandat 58.226 kb on + strandat 58.226 kb on + strandat 58.227 kb on - strandat 58.227 kb on - strandat 58.297 kb on + strandat 58.297 kb on + strandat 58.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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56,118 - Ac3H11_4279 0.31 -0.8
56,211 + Ac3H11_4279 0.39 -1.8
56,211 + Ac3H11_4279 0.39 +0.4
56,211 + Ac3H11_4279 0.39 -0.7
56,211 + Ac3H11_4279 0.39 -0.5
56,212 - Ac3H11_4279 0.39 +0.3
56,212 - Ac3H11_4279 0.39 -0.1
56,212 - Ac3H11_4279 0.39 +0.1
56,212 - Ac3H11_4279 0.39 +0.8
56,212 - Ac3H11_4279 0.39 +0.1
56,212 - Ac3H11_4279 0.39 +0.2
56,212 - Ac3H11_4279 0.39 -0.6
56,212 - Ac3H11_4279 0.39 +0.7
56,301 + Ac3H11_4279 0.46 +0.4
56,301 + Ac3H11_4279 0.46 +0.2
56,301 + Ac3H11_4279 0.46 +0.3
56,302 - Ac3H11_4279 0.47 +0.7
56,302 - Ac3H11_4279 0.47 +0.9
56,325 + Ac3H11_4279 0.49 +0.2
56,325 + Ac3H11_4279 0.49 -0.5
56,325 + Ac3H11_4279 0.49 +0.5
56,325 + Ac3H11_4279 0.49 -0.5
56,326 - Ac3H11_4279 0.49 -2.0
56,326 - Ac3H11_4279 0.49 -1.4
56,326 - Ac3H11_4279 0.49 +0.6
56,326 - Ac3H11_4279 0.49 -0.3
56,326 - Ac3H11_4279 0.49 +0.5
56,505 + Ac3H11_4279 0.64 +0.4
56,544 + Ac3H11_4279 0.68 -0.4
56,544 + Ac3H11_4279 0.68 +0.0
56,544 + Ac3H11_4279 0.68 -1.1
56,545 - Ac3H11_4279 0.68 +0.2
56,586 - Ac3H11_4279 0.71 +0.0
56,586 - Ac3H11_4279 0.71 +1.8
56,586 - Ac3H11_4279 0.71 -0.1
56,589 + Ac3H11_4279 0.71 -1.0
56,589 + Ac3H11_4279 0.71 -0.4
56,589 + Ac3H11_4279 0.71 -0.2
56,590 - Ac3H11_4279 0.72 +0.1
56,590 - Ac3H11_4279 0.72 +0.8
56,808 + -0.3
56,808 + +0.5
56,808 + +0.3
56,809 - -1.1
56,809 - -1.0
56,809 - +0.3
56,809 - +1.1
56,809 - +0.3
56,809 - -0.2
57,140 + Ac3H11_4280 0.39 +0.0
57,141 - Ac3H11_4280 0.39 -0.4
57,224 + Ac3H11_4280 0.52 -0.2
57,224 + Ac3H11_4280 0.52 +0.4
57,224 + Ac3H11_4280 0.52 -0.6
57,225 - Ac3H11_4280 0.52 -0.3
57,305 + Ac3H11_4280 0.64 -0.0
57,306 - Ac3H11_4280 0.64 -0.6
57,386 + Ac3H11_4280 0.76 -0.1
57,471 - Ac3H11_4280 0.89 -1.2
57,959 + Ac3H11_4281 0.75 -1.1
57,960 - Ac3H11_4281 0.75 -0.3
57,960 - Ac3H11_4281 0.75 -0.9
57,968 + Ac3H11_4281 0.77 +0.2
58,013 + Ac3H11_4281 0.87 +0.4
58,014 - Ac3H11_4281 0.87 +0.2
58,113 + +0.7
58,116 - +0.0
58,122 - -0.1
58,131 + +0.4
58,205 + +1.4
58,205 + -0.3
58,226 + -0.9
58,226 + +1.2
58,226 + -0.2
58,226 + +0.5
58,227 - -0.4
58,227 - -0.9
58,297 + -0.6
58,297 + +0.6
58,298 - -0.0

Or see this region's nucleotide sequence