Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3885

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3884 and Ac3H11_3885 overlap by 4 nucleotidesAc3H11_3885 and Ac3H11_3886 are separated by 31 nucleotidesAc3H11_3886 and Ac3H11_3887 are separated by 30 nucleotides Ac3H11_3884 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 103,350 to 104,534 _3884 Ac3H11_3885 - Probable transmembrane protein, at 104,531 to 105,184 _3885 Ac3H11_3886 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 105,216 to 106,022 _3886 Ac3H11_3887 - Probable transmembrane protein, at 106,053 to 106,268 _3887 Position (kb) 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.631 kb on - strand, within Ac3H11_3884at 103.802 kb on - strand, within Ac3H11_3884at 103.802 kb on - strand, within Ac3H11_3884at 103.802 kb on - strand, within Ac3H11_3884at 103.923 kb on - strand, within Ac3H11_3884at 104.513 kb on - strandat 104.513 kb on - strandat 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.677 kb on - strand, within Ac3H11_3885at 104.875 kb on - strand, within Ac3H11_3885at 104.875 kb on - strand, within Ac3H11_3885at 104.875 kb on - strand, within Ac3H11_3885at 104.875 kb on - strand, within Ac3H11_3885at 105.027 kb on + strand, within Ac3H11_3885at 105.028 kb on - strand, within Ac3H11_3885at 105.057 kb on + strand, within Ac3H11_3885at 105.057 kb on + strand, within Ac3H11_3885at 105.058 kb on - strand, within Ac3H11_3885at 105.058 kb on - strand, within Ac3H11_3885at 105.058 kb on - strand, within Ac3H11_3885at 105.058 kb on - strand, within Ac3H11_3885at 105.061 kb on - strand, within Ac3H11_3885at 105.061 kb on - strand, within Ac3H11_3885at 105.061 kb on - strand, within Ac3H11_3885at 105.061 kb on - strand, within Ac3H11_3885at 105.275 kb on - strandat 105.275 kb on - strandat 105.275 kb on - strandat 105.275 kb on - strandat 105.275 kb on - strandat 105.275 kb on - strandat 105.325 kb on + strand, within Ac3H11_3886at 105.326 kb on - strand, within Ac3H11_3886at 105.535 kb on + strand, within Ac3H11_3886at 105.536 kb on - strand, within Ac3H11_3886at 105.745 kb on + strand, within Ac3H11_3886at 105.745 kb on + strand, within Ac3H11_3886at 105.745 kb on + strand, within Ac3H11_3886at 105.745 kb on + strand, within Ac3H11_3886at 106.013 kb on + strandat 106.013 kb on + strandat 106.013 kb on + strandat 106.014 kb on - strandat 106.027 kb on + strandat 106.027 kb on + strandat 106.028 kb on - strandat 106.028 kb on - strandat 106.044 kb on + strandat 106.044 kb on + strandat 106.044 kb on + strandat 106.044 kb on + strandat 106.045 kb on - strandat 106.045 kb on - strandat 106.045 kb on - strandat 106.051 kb on + strandat 106.051 kb on + strandat 106.051 kb on + strandat 106.051 kb on + strandat 106.051 kb on + strandat 106.051 kb on + strandat 106.051 kb on + strandat 106.051 kb on + strandat 106.052 kb on - strandat 106.052 kb on - strandat 106.052 kb on - strandat 106.052 kb on - strandat 106.052 kb on - strandat 106.052 kb on - strandat 106.052 kb on - strandat 106.052 kb on - strandat 106.072 kb on + strandat 106.073 kb on - strandat 106.073 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
103,631 - Ac3H11_3884 0.24 -0.9
103,631 - Ac3H11_3884 0.24 -2.5
103,631 - Ac3H11_3884 0.24 +0.9
103,631 - Ac3H11_3884 0.24 -0.1
103,631 - Ac3H11_3884 0.24 -1.0
103,631 - Ac3H11_3884 0.24 -2.5
103,631 - Ac3H11_3884 0.24 +0.1
103,631 - Ac3H11_3884 0.24 +0.0
103,631 - Ac3H11_3884 0.24 -0.4
103,631 - Ac3H11_3884 0.24 +0.3
103,631 - Ac3H11_3884 0.24 -0.7
103,631 - Ac3H11_3884 0.24 +0.0
103,631 - Ac3H11_3884 0.24 +0.0
103,802 - Ac3H11_3884 0.38 -1.1
103,802 - Ac3H11_3884 0.38 +1.0
103,802 - Ac3H11_3884 0.38 -0.0
103,923 - Ac3H11_3884 0.48 -1.2
104,513 - -2.1
104,513 - +1.7
104,677 - Ac3H11_3885 0.22 +0.9
104,677 - Ac3H11_3885 0.22 -1.2
104,677 - Ac3H11_3885 0.22 +0.0
104,677 - Ac3H11_3885 0.22 -0.5
104,677 - Ac3H11_3885 0.22 -1.0
104,677 - Ac3H11_3885 0.22 -0.2
104,677 - Ac3H11_3885 0.22 -1.3
104,677 - Ac3H11_3885 0.22 -1.2
104,677 - Ac3H11_3885 0.22 +1.2
104,677 - Ac3H11_3885 0.22 -1.1
104,677 - Ac3H11_3885 0.22 -0.2
104,677 - Ac3H11_3885 0.22 +0.6
104,677 - Ac3H11_3885 0.22 -1.8
104,875 - Ac3H11_3885 0.53 -0.2
104,875 - Ac3H11_3885 0.53 +0.0
104,875 - Ac3H11_3885 0.53 -1.0
104,875 - Ac3H11_3885 0.53 +0.0
105,027 + Ac3H11_3885 0.76 -0.3
105,028 - Ac3H11_3885 0.76 -0.2
105,057 + Ac3H11_3885 0.80 +1.8
105,057 + Ac3H11_3885 0.80 -0.6
105,058 - Ac3H11_3885 0.81 +0.2
105,058 - Ac3H11_3885 0.81 +0.8
105,058 - Ac3H11_3885 0.81 -0.2
105,058 - Ac3H11_3885 0.81 -0.8
105,061 - Ac3H11_3885 0.81 +0.5
105,061 - Ac3H11_3885 0.81 +0.9
105,061 - Ac3H11_3885 0.81 +0.5
105,061 - Ac3H11_3885 0.81 -0.7
105,275 - +0.1
105,275 - -0.9
105,275 - -0.9
105,275 - -1.3
105,275 - -1.0
105,275 - +0.8
105,325 + Ac3H11_3886 0.14 +0.2
105,326 - Ac3H11_3886 0.14 -0.9
105,535 + Ac3H11_3886 0.40 +0.2
105,536 - Ac3H11_3886 0.40 +1.3
105,745 + Ac3H11_3886 0.66 -0.7
105,745 + Ac3H11_3886 0.66 -3.6
105,745 + Ac3H11_3886 0.66 -0.2
105,745 + Ac3H11_3886 0.66 -1.0
106,013 + -0.1
106,013 + -0.3
106,013 + -0.2
106,014 - -0.4
106,027 + -1.3
106,027 + +0.6
106,028 - -0.1
106,028 - +0.4
106,044 + +1.0
106,044 + -0.8
106,044 + -0.9
106,044 + -0.4
106,045 - -0.5
106,045 - +0.3
106,045 - +1.0
106,051 + -1.2
106,051 + +0.8
106,051 + +1.3
106,051 + +0.2
106,051 + +1.0
106,051 + -1.3
106,051 + -0.1
106,051 + +0.5
106,052 - +0.1
106,052 - -0.8
106,052 - -0.4
106,052 - +0.2
106,052 - +1.1
106,052 - -2.5
106,052 - -0.1
106,052 - -0.3
106,072 + +0.4
106,073 - +0.3
106,073 - +0.6

Or see this region's nucleotide sequence